mRNA_H-akashiwo_Contig98.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.11.1
Unique NamemRNA_H-akashiwo_Contig98.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: UPI001CBBD3D3 (EF-hand domain-containing protein n=1 Tax=Kangiella taiwanensis TaxID=1079179 RepID=UPI001CBBD3D3)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-8
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   82 QIQAIYNDLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWR 270
            +I+  +N  D + + ++ + EFGELL+ L  +   E++   F L+DTD S YIEF EFL WW+
Sbjct:   11 EIKEHFNFFDRDNNGRIDVDEFGELLQVLSPDAGDEQIHKGFSLVDTDGSGYIEFEEFLTWWK 73          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: A0A1B3BAD4_9GAMM (Putative signal transduction protein with EFhand domain n=2 Tax=Kangiella sediminilitoris TaxID=1144748 RepID=A0A1B3BAD4_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 6.210e-8
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   82 QIQAIYNDLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWR 270
            +I+  ++  D +G+ ++ + EF ELL  L  E  P++    F L+DTD S YIEF EFL+WW+
Sbjct:   11 EIKGHFDFFDSDGNGRIDLDEFTELLVVLSPESNPDQAQEGFALIDTDRSGYIEFDEFLSWWK 73          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: UPI001CBCC680 (EF-hand domain-containing protein n=1 Tax=Kangiella shandongensis TaxID=2763258 RepID=UPI001CBCC680)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-7
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   70 FSDEQIQAIYN-----DLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWR 270
             +D+Q++ I N     D D NG  ++ + EF ELL  L  +  PE+    F L+DT+ S YIEF EFL+WW+
Sbjct:    4 LTDKQLEEIQNHFKFFDRDNNG--RIDLEEFAELLAVLSPDSNPEQAKEGFSLIDTNGSGYIEFDEFLSWWK 73          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: D8UDD2_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UDD2_VOLCA)

HSP 1 Score: 58.2 bits (139), Expect = 4.180e-7
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   82 QIQAIYNDLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWRREK 279
            +I  +++  DVN D ++ + E  +L ++LGKELT +E+  A R+LDT  + ++E  EF AWW + K
Sbjct:  289 EIAYVFSTYDVNDDYRLELSEVKKLCQDLGKELTEDELKEAMRILDTSKNGFVELDEFCAWWTKAK 354          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: A0A8J4C5P0_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4C5P0_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-6
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   82 QIQAIYNDLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWRREK 279
            +I  +++  DVN D ++ + E   L ++LGK+LT +E+  A R+LDT  + ++E  EF AWW + K
Sbjct:  274 EIAYVFSTYDVNDDYRLELSEVKRLCQDLGKDLTDDELKEALRILDTSKNGFVELDEFCAWWTKTK 339          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: UPI000424B726 (EF-hand domain-containing protein n=1 Tax=Rheinheimera baltica TaxID=67576 RepID=UPI000424B726)

HSP 1 Score: 48.5 bits (114), Expect = 8.210e-5
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   70 FSDEQIQAIYNDLDV---NGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWR 270
             S++Q+ AI +D D    +G+ Q+ I EF ELL  L  +     V   F+L+DT+   +  F EFL WW+
Sbjct:    6 LSEQQLAAIKSDFDFFDRDGNGQIDIAEFIELLTALAPKTKVSHVDEGFKLIDTNNDGFXXFAEFLTWWQ 75          
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Match: A0A4R5HG83_9ALTE (EF-hand domain-containing protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5HG83_9ALTE)

HSP 1 Score: 48.5 bits (114), Expect = 8.400e-5
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   79 EQIQAIYNDLDVNGDNQVTIIEFGELLEELGKELTPEEVAHAFRLLDTDASDYIEFREFLAWWR 270
            EQI+  +   D +G+ Q+ + EF ELL  L  +   + V  AF L+DT+   +IEF EF AWW+
Sbjct:   13 EQIREEFAFFDQDGNGQIDMGEFIELLTVLSPKTKAKVVEEAFALIDTNQDGFIEFDEFAAWWQ 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI001CBBD3D32.220e-841.27EF-hand domain-containing protein n=1 Tax=Kangiell... [more]
A0A1B3BAD4_9GAMM6.210e-841.27Putative signal transduction protein with EFhand d... [more]
UPI001CBCC6801.730e-741.67EF-hand domain-containing protein n=1 Tax=Kangiell... [more]
D8UDD2_VOLCA4.180e-739.39Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4C5P0_9CHLO1.400e-637.88Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
UPI000424B7268.210e-537.14EF-hand domain-containing protein n=1 Tax=Rheinhei... [more]
A0A4R5HG83_9ALTE8.400e-540.63EF-hand domain-containing protein n=1 Tax=Alteromo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:709187..725687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002956688.1
PFAMsEF-hand_7
Model size444
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.35e-08
EggNOG OGs2E21W@1|root,2S9AT@2759|Eukaryota,3804N@33090|Viridiplantae,34M4S@3041|Chlorophyta
DescriptionEF-hand domain pair
Cds size336
COG categoryP
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.11.1prot_H-akashiwo_Contig98.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 709205..725597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.8705351-UTR-H-akashiwo_Contig98:709186..7092041681388065.8705351-UTR-H-akashiwo_Contig98:709186..709204Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig98 709187..709204 +
1681388065.9262924-UTR-H-akashiwo_Contig98:725597..7256871681388065.9262924-UTR-H-akashiwo_Contig98:725597..725687Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig98 725598..725687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.8810463-CDS-H-akashiwo_Contig98:709204..7092281681388065.8810463-CDS-H-akashiwo_Contig98:709204..709228Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 709205..709228 +
1681388065.894712-CDS-H-akashiwo_Contig98:717540..7176671681388065.894712-CDS-H-akashiwo_Contig98:717540..717667Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 717541..717667 +
1681388065.9074123-CDS-H-akashiwo_Contig98:719749..7198921681388065.9074123-CDS-H-akashiwo_Contig98:719749..719892Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 719750..719892 +
1681388065.9167242-CDS-H-akashiwo_Contig98:725555..7255971681388065.9167242-CDS-H-akashiwo_Contig98:725555..725597Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 725556..725597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.11.1

>prot_H-akashiwo_Contig98.11.1 ID=prot_H-akashiwo_Contig98.11.1|Name=mRNA_H-akashiwo_Contig98.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MVDQLMGKGGERAEQSDFSDEQIQAIYNDLDVNGDNQVTIIEFGELLEEL
GKELTPEEVAHAFRLLDTDASDYIEFREFLAWWRREKDSLPNSRRISMED
GILDESPSRRK*
back to top

mRNA from alignment at H-akashiwo_Contig98:709187..725687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.11.1 ID=mRNA_H-akashiwo_Contig98.11.1|Name=mRNA_H-akashiwo_Contig98.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=16501bp|location=Sequence derived from alignment at H-akashiwo_Contig98:709187..725687+ (Heterosigma akashiwo CCMP452)
AAGGAGCAGCTCAGCCACATGGTCGACCAGCTCATGGGCAAGGTGGGAGG CCGGGCGGGCGGGCGGGCGGGTGGGCGGGCGGGCAGTCCTCCTCCCCCCC CCGTACTATGCCAAACCCCGCCGGAAAAACGGCCGTGCGCTGCTCCGGAG GAGCCTCCGCTTTTCGGCCTAAGACCCACCCATCCCGGTCCCAGGCCGGA AGCGCGGGTGCTCCGGAGCACCGCTTCCTCCACTGCTTTTGGAGCTCTTC TTTGTGTGCGTATGCCTCCTCTTTGTTTGCGAGCTGGAGCACGCACGGCG TGGAATGGGTGTACTACTTGAGTAGTACCATGCAACGGCCAGGAGTGGTG GACTGGCGGTTGTTGGTCCCAGAGAATGCAGCTGAGAGGGAATTTGGGTT CATTTGGAGTAAGGAGAGTTGATATGATATGTTTGGCAGTGCTGGGCTGG TGGTGGTGGGGATCGGGTGATCCGGAGCACGAGGTCGATATAGAGTGAGA GGGTGATCCGGAAGAAGGGGTTGAGAGAGGGTGAGCGGGTGATCTGGAGC ACGAGGCCCAGAGAGAGTGAGCGGGTGATCCGAAACACGAGGTGGAGAAA AGGCTAGTGGGTGATCCGGAGCACGCAGTGGATGGGGGTTTAGTGGTGGG TGCTCCGGAGCACCCGCACTTCCGACTTGGGACCGGGATGGGTGGGTTTT AGGCTGAAAAGCGGATGCTCCAAAGCATACGGCTGTTTTTTTTCCGGTGG GGTTTTGCATGTTGCCCCTCCCCCCCCGGGGCCGACCGGGCAAGGGGATA TGTAGCGGAGCGTTTGTGTGGGTGGGTGTGGGTGCTGGGTGTGCGTGTCG AGCCCTCCTGAAAGCTCTCAGCAGCGCTAAGTCCGCGCGCACTTTTTGTT TTTCATCAGGTTTAGTAGGGAGGGAATAATTGTGGGCAGGAAAGCGGCAG GTGTGGGGGGGTGGGGGGTGTCCTCATCACCCAATCCTGCCACGGCCGCT GTAATGGTTGTTGTTGACGTGAGTGGGGTTGGCGCCAATCGCGCCAAACT ATTTTTTTTTTTAGGATCAGAGAGGTCTGATGATCCCACCAACGGTTGCT ACATACTTGACTCATTTCTGATAGACCTGTCAAAAGCATGGGTTGTGCAA AAAAGGAGGTGCAAAAAAGGAAGCAGATGTGCATTGCCACTATAAAGTGT GTAACACCATTTTTTTTTTATGTTTTTTGGCTTGTCTCTGATAAGACCAT CATTGGGTGTTGTGTTGTCTCTGATAAGTCTATCATCATCGAGTATTGTG TTGTTCTACTTGACTTAACCCTTTTAGACAAATTTTTTTTTGGGCAAGTC ATATTGGTATATACCAATATGACTTCGCAATTTTAATTGGTCAAAGTGTA ACCGTCGATATGCGTGTTGATTTGGATTGGTATTTCAATTTCCGTGAAGT CATTTCGGGGAAACTCCGGGGCCATATTGGTTTAAACCAATATGGCTCTC AATCGTGTGACTGAAGTGACCCTTTCAGTCCTATTTCCTGTGGTAGGAAG TAGTACCAGTCCTACTCTTCTCCTCGGATTCAATGTGGACCCATTACTTG CGAAAATGGAATTCAATTTCTCCTCCTCCTCTTCTTcCGGAAAAAACGtA CGTGTGATGATGTCGTTGAACCAATCAAAATCAAACGTTTGAAAAAAGAT CACGAACCGAACAAACACGGAGAACAGATTCACAACAACAAGAAGAAGTA CAATCTGCTACACCTAGTACCTGGCTATCATAGGCTGTATCTATCAGATA ACTCCCAGGAGGCTTGAACCAAAAACTATACAGAGCAAAACATTTTACCA TTCCTATCTGAAGCCAAGTAAAAACATGCATGGATTACTTCCCAAAGTCC CAAAAGTCAGAAATATTGTTCATTTTCACTAATATACACAGCCATTGAAA CAGTACACCGCTGCACTCAGAATATACAAGCAAGGGAGCAGAGCTATCAA GGCGGTGAAAGCATCCAAAACGATCAAACAATTATAGAAGTATGTCCGAT AAAATAATTATGTACCGGATGACGATTGGATTTTTCATTAGGTTCTCGAA TTCTATTCGCCTATTTATCCAGTTTTAAAAGTTTGAAATCATTGCGATTC TCCGTATTTTCATTGGAGAATCTAGTTTTGTAACGGTCGGTTGAGTCATA TTGGTATATACCAATATGACTTTTATTCTTGTCTAAAAGGGTTAATCCTT AACGGAAGGGACACATCCAGCCCTAGATCAAGCAAAATCATCTCACTACC ATCACTGAAACAGGAGGTTAGAAATTTAGAAAGCTTTTAAAAACATAGCC ACACCACAGTATAATAATTTAAAAAACATAGCCACACTACAACACTCCCA CACTTCTTTTTAGAATTATTAGAAGCAATTTTGAGTAAATATTAGTATGA TCATCTAGAGGCCCCGGTCAATGGACCGCAGGCCGGGGGGGGGGTGCACT TCTGCCCGCAACACGAGACAGGGGGAGAGGAGTTGGTTTTGCCGGTATGG CCTACGATGTGCACACATGCACAGGGTTCTAGGGTCGGCCAGGGTGCGAT GCTGGCACGACGCTGAGGGGAGGGAGTGTCCTAGTCTGCAGGTGTGCACA TTTGAGCATTGGCCACCGGTCAATACTTCACAGCTACCCTGGGTTTAAAT GTGGATATAAGTGCGATGGCTTGCAACAAAGGAGTGGGAGTTGGGGGAGG GGGGAGATACGGGATATATCAGCATGGACAGTTTTTGGGGGGCTTTGTTT GTGGCAGCAGAGATCAGGCGTGGTGGATATCAGGGCCAGTTGGGGGCCCA GGATGGAGGAAACTTGACGCTGTGGTAATGCAAAGAAGGTGAGGTCTCCC TGGGTTTACAGGTTTTGGGGCTGTCAGGACGACGCCAGGAACTGTCAGAG CTGGGGCACGGGCTGGGCGCAAGCTTAGGGGCAATAAAGCTCGTCAAAGG TTGCGCCGGAGGAGGGGGTCGGATCAAGGAAGGGCTCATTCTTCAGATCA AAAGCGAGCTGCTAGCGCCATGGAGCAACAACAGCATCCTTCTCGTGCTG CTGCTGCTGCTGAAGTTGACGCTGGTGCTGCTGCTGTTGCTGGGCAGTAG CAGCAGCACGAAGGCAGGGAGGCACAGCACGAAGGGCAACAGCATGAGGG GCAACAACATGAGGGGGAGGGGGGGGGGGAATAGAGCAGCCTCATGAATC TTCGGCATTTCTGGACCAAGGTCGGCGAATCATCTTCACCAACTTGGACT TCAACGGGGAAAAGGCGAAGTGGGAAGAATTGCAGCCACCGCCAATTGGT GGGAGTGGGGGCCAGGGAGAAAGTCAGGAGGAAATGTCCGGAGCTGGAGA AAGGCCGACACAACAGGAAGGGAAACTGATTGGGGAAAGCAACGGGCCAG AGGGGGGTGATTCGCCAATGAGAATGGCAGGTGGAGCTGGGAAGAATAGA GAGGGGGGGAAGAACACAAGCTGCTGCTGCGCGGGAAGAAACGAGCTACA ACTGCGCAGCAAGGGGAATTTTGAGGACACAGAGGAAGTAGGGGAAAATT CTTCTTCTTCTTTGTCGTCATCGGAATCGTCAAGTAGTGGGGAAAAAACG GAACTTGGATCTGAGGAAGAGTCAGGAGGGGAGTGCAGCGACACAGCCCA TGGAAAAAGAAGTGAATGGGCAATAAGTGGCGCTGGGGAAGTGAAAGGGG AAGAGAGGGATTTGAGAGGGATCTGAGCTGGTTTAAGGGCAAGCGAGCCG TCGGCTTGCAAAGATATAGAGCGCCAGAGGAAAATAGAACGGGAACAGGG TGAGCGAGAAGCTGAGGCAGAGAAGGAGGCAAGACAGGACCGTTTGCTTC AGCACCAGGCTATTGCTAGGGCAGCAAAGGAGCGCCGGGATGCAGAGGCC AGGAGGGCAGCCAAGGAAGGGGCGGTGGAGTTGTGCAAGGGGGCTAGATT GGCTGGGAGAAGAGGGGGACAGCGGGGACGTAGGAGATCGGCTCGTGGAA ATAGAGGAGCTTGGAGAGGGGGTGCTGCTGGATGGAATCTTCCCTTGGTG TTCATTCTCGGCCACCCATATGGTATGAGCTGAGGTGGCTTGTGGGAAAT GCGGCATCATCAAGCACACGCAGAGGTGCGCCAGGCAATGCCCGGTGGGA GTTTGCCATGTTTGCTGCCGCCGCCAGGGGCGGCGTGGGGTAGGGGGTTT CAGCGTGGAGGAGGAGTGGGCCTTCTTCGTGAAGATGTCGAAGCCTTGGC AGCTCTCGGAAGAGCAACTTGAGTTCGCGTGAGCAGATTGGAAGAGCCAG TTGGGGCTTTAAGCTGTTTGGCACCGCCTGAGCTTGGCGGTGTGTGTGCT GGGCGGCTGTCATTTCTGCAGTGGGTTATGTACATTGGGGGGAAACTGGC AAATGGGAAGGTGTGCAGTCGGAATCAATGCAGGCTGGCATCTTAAGTTT TGGTGATGAACCAGAGAATGAGTAGTGGGATTTAGAAGTGGAAGGGTCCG TGTATGGAGGCTGGGGCTTCGGTCCTTGTAGTTATCCAAAAGGCTGGACC TTAAATAAATTAAAAGCATCATCATCATCATCATCATCCCAGCCACACTA CAATATAATACCAGGCCATCAACACTGGCAAAGAACCATGGTTTCAGCTA ATAAAATAAAGATCAGGCACAAGCCTTGGCTGGTGCTTGCTTGGTATTAG CCACAGCAATGGCCTTTTGCAGTGATGGCCTGGCATTATACTGTAGTTTA CATATAGCTATTATATTTTTTGATAAAGCTTTTTCTAAATTATTCCCAAC CTCCTGTTTCTGTGATGGTAGTAAGGTGATTATTGCTTGATCTAGCTAGG GCTGGATGTGTGCCTTCTGTTAACCCTCTTACTGGATTTATTTTTTTGGA GGCTATGAACGGATCGCTTGTTCCGGAGCGTTCCGTACTCACATCTGTTT GGTGTAATCCGGCTTTTTGTTGAGACAATTCCCTTACTCTCCGCCAAACG GGTATAAACCCGTTTAGCTCTTTGGCCGACAGTGAAGTGTTTGTAAGATT CTCCTGTTGTACTTGTATTTATTGTTGTAGTAATAAGATGAAGCACAGAA CCCCTTTTTGATGAATTTAGCATAAGGAAATACAAAAAAAAATTCTGAGT CGAATCCATGTACGCGCTAACAAGTTTTTCCTCGAATCAAAATATTTTGG AGAGTTTTTCAAAACCAATCAAAATCAAATTCGAATTGACATTCAACACG ACAAAGAAAGAGCAGCAAGAGGTAACACAGAGCACAACGGAGCAAGCTTG TACCCTACACAACAAGAGCAAAATAATCAGCTTACTTTAACCTTTTTGTG AATCAAAAGGCCCTTACTGGACAAGCTTTTTAAAATACCAATGGTCCAAA ATACTGGTAAAAGAATATGTAATGTAAAGCTTGTGAATTGTTACACCGTT GCAACCAGTAGATGCAGAGAAGGAGTATAAGGGAGATCACAGGCTTTACA GCGCTCATTACAATGAGACGATTATAGAGGCAAGGGCCATAAAACAATGA CGTTTACGGTATACGAAAAGGTTGAATATCGAATAATTCTCAATTTTGAT TGGATCTTTCGTTAAAGGTTGAACAACACAATTTTGTAATCATTTTTCTT TCTTTTTCTACGCTTTGGCAGTTGACTGACACAATATATTGCCAATCGCG ATAACGTGTTTGTTTTCTCAAGAACTAGCCCCACAATAACAAAGTATACT CGGATGTGATGGCACCGAGAAATATGCAAGAAGTTCTCTTCTAGAACTGT CTGTAGTGGTCAAATTCTATTGCATGGTTGAGCTTTGATGTATTGGGCAA CTCATCTTCAGCCAGGTGTTGCAGAAGTTTCACTCTGGTCAATCAGTTTT GAATTTCTTGATGATTGCTGGAGGAGATGAGGGTTCTACAATGTTCTTGA TTGGAATATTTCCTTCTTTTCCTCTTGTTGGTAGTTTTTTTTATTTGGAC TTCAACAATATAGCAGCAGCAGCAGCAATAGCGACCAATGATTTTTTTTT TGTACTTTCACATATGGCCAATGCCCAAGTTAAAAGAAAAAAAAATGTGA TTTTTCCTCTGCTGAAGCAGCACGACAGCGCTTTGTACCAGTTTAATGTA CTCTTTCCCTGATCTGGACAGATGGCTTGGATTGCCCAACCAAAATGGGA ACCGCACACAACGTTGCCATCATGTACTTCTAGCCATCATGGCCCATGAG TGCACAGTTGTCTTGTTGGAGGGAGGTATCCTTCTATGAACTGCTGTTGG AGAACGGCATACCTAAGATCGCTCCATAATGATGAAATGTAGCAGGCAGG CAATGATGCCCAGTCTGGCACCATGACATATATATTTCTGAATCCTTCTT TTAGAATGTATATAGCCTTCAATAAACGCTGTACTCTGCAACGTGTGGGT GCTTTATGTTTAACCAACTTGGATTTCTTGGGTGGCATAAAAACTTTTTG TTCATCATGCGTGTTTATTCTCCTGTGCCGTAGAATTCCAATGGTTTCAA TATTAGATCTATATGATTTAGCACTTGCTGACTCAATGACGACTCATTGA TGAATAGACTCAAGCTCAGATCGCTTCTTGATATTACCAGTTAACTAAGT ATTCACTCAGGAAAGCTTGCTTTTGCTTGGGCAATCGACTTCACCCGCTC TAGTTTGATTTTGTTTACCCTTAACAAGTCTCTCTGTAATAGATGACGAA TCTTCAGCATTTTGATTAGCACCATTATGGAGTATATTTCTTTGTCTGGT GGTCAAAGTTCAACAAGGAGCTGATGGTTCATTCCTCGATCCTAGCTGGT TTTACTGAGCTTCAAAGAGTAGAGGATGATTGTTACTGCTCTTGCCCAGC CTCTCCTGTTTGCTTTTCTTTTTTTCTTCTATTTTTTTTTTCTTCCTTAT TCAGCAGTCGCATCATTTTGTGGCGCTGCGATAAGATTTAGCACATCAGC CATGCAACAGTGCAACAGTCATTTCCCCCTCTTCTCCTCCTTTGTCGTAT TTAATTATTATAATCGGAATATCCTTAATTGAGGATAAAATTGATTAAAA AGGCAGCATTGCACTTTGAACTATGGGAGTGTTCATCTAACTAGACTGTC TAATTTCTATAGCTGCAACAGGTGCGTGGGACCACCTACGCTATACTGAG AAGGCTTGCTTGATACACTTGCTATCTCCCTGGTTGCAACCTTACCTTGG CTATTCTCGCTCACTTCTGGCTATTTTTCCGACCCCAGCTATTTTTGCTG CTACATTTTGCATTTGACTTTGAACAGTGAGGTCATGTCTGCTGCCCTGG TTCCAAGCAACAAACACTGGCTATTTTGCTGAGCAATTTTTGCCGAAACA TTTTCCTTTTGAATTGGACTTTGAATTGAGATGCTTAATGTCCGACCATT CCTGCTTCCGAGCGAAGCTACAAGCAAGAACAATGTCCTGACAACAACAA AGATATGCCGTTGCCGCCTTGCTGCGCCTTGCTGCTCTGGTCTGGTAGCT CAGCATCTATAAAATTATGGAAGATCGCTATCCACTGCAGAAAAACATTG CAGTGACTCAGCAATCGTGGAGGTATGTTGCAGAATTTCAAAAATGATTT AAATATTATTGACTCTACAACTCAGCACCACTGGTTGTGACTCAATGGTG AATAGACACAAGCTCAGATTGCTTCTTGAAATTTCTTCTTTCGTCTATTT GTACTTCGCCAAAAAAGCGCACACATATTCTTTTTGTGCTTGATCACAAG GACAATCTGCTATACGAAGATCCCTAGGCACCTTTTTAAAGGGAAAGGCT TATAAGTATATGATGTAGTGGGAGTGAGTGGTAAATTTTGATTCTTGATC ATAGGGACAATCTGCCATACAAACGGCCCTACGCCACCATTTTTGAGGGG GGAAACAGGTGTATGATGTAATAGGAATGGTGTTGGTGCAGGTTTAGCTG CCTCAGGGGGGTTCTGCCCCCTCCACAAGTGAGTGCATTACCGACCTTTA TTAAAAGCTCAACTCATCATCATCATCACTATCATTACACTCCCCATGAA AATATACAAATCTCTTGCCCCCCTTTGCCTCTTACATTATTTTTGATTTT TGTTGACACTTTGTATCGTCCCAAATGCCACTTCTTCTTCTCGGTCGTGT TTCTGTCTCTAGGGCAATGGAACGCACTTCCCCCATCCTTCCTACCTATA CAAGCATCGACACAGCTTCCCCACCATGTGCTGCTGCTGCTACGGCCACA ACAGGGAGGGGAACGCGCGGAGCAGAGCGACTTCTCCGACGAGCAGATCC AGGCCATCTACAACGACCTGGACGTGAACGGCGACAATCAGGTCACCATC ATCGAGTTCGGCGAGCTGCTGGAAGAGCTGGGTGAGACCTCATCATCGTA CCGCGACGACTGCACACAGCAGCATCTGTATATATGGAGTGCAATTACTT CTATATTTTTGATCATGCAGTGTGCTCCTATCACATCCCGAGGTATTACA CGTGCCATGGCATGTGAACACTTTGTTATATGTGCTTCAACATGCCACCG GGAAATCCAAGCTGGAAAAGCCGGTCGAAGCCTCTTTGACGAAGGCAGGG ACCCGATTGAAACACCGACGGCAGATGGCCGCCGCCGCTCCCTTCATCGG GAGGAGCAAAAGGCGCCCCCCACCCCCGGGGGATTGTGTATGTCTACAGG TTAAGCATGTCTACAGTAAAGCCCCTCGCCGTCCTCACTGGCTGCCCTGC CACACTGAGGTCCTTGCCCGCGGACTGTTCAAAGAGGCGTGGGGCTTCTT CACGGAGGACTAGCTATCAAAGCGTGCCTTGCGCCTCTGTTGTTGAGAGG CACGCCAACCTACCAGCAGACAAGAGAAGAAGAACTTGCCCTGGGGCCTA TGAGGAGATGGGAGCAACCGCCCTCTTGGGTGGAGATATCTACCTGTTTG AAAGAAAGAAGCACAAATAATTAATCCTTGACAACAAGTCCTTCACATCC AACCACTCCTGCCAGAAGAACGACAACTGATTCCGTCTTTTGTTTTATTT ATCTTAAACGTAAAAACAAAACTATAGTAATACTATGATGTGCGGACCAA TAACATATATTATGTTGCAGGGTGTTGGGTTTAAACAGAAAAACCGCTTC CATCATCATTGAGTATAGCTCCATATTGCCTTGAAGGCGAAATGTCAAAG GTTTTAAAATCATTATGACTCCATGACAACTATGCTGCATTTCGACTAAT AAAAGCCACGGCCGGTGGCTCTGCTCCTTCTCCCACCGGCCTTCAGGCTG CCTCTGAGTGAATGATAAACCAAATGAAGATGGGCAGCGAATGTAAGAAG AAGATGGAGTGCTAAAAAAAATGAAAGCAGTGCCGGTAGACGGGCTACCA CCACCACTAATTCATCCTTGCTGCATGCGCCCCAGCTGTTAATTGAAAAC AACAACATACTTTTAAAGGAAACATTCTGCCCTCCTTCTTCTCCATGTTC ACAACTAACCTGAGCATCATCATCATAACCGGCACAAGTGCCGGCCATGA GCCACAGACGAAATCCATGATCTGAAGATGTGAACTAGTGTCCCAAAGCT AAGCTCAACCGTTCTTTGAGTAGATGTCTGGATCTGCAAGTAGAATTGGG ACCAATTGGGACTAGCTATTTCGCCTTCCTCCAGTGTACCGCCCGAGACT GGTGCCCCCCGCACGAGTGTGGGGTTATCTCGGTTGACAAAACCCCATGA TGAGCGGAAGAGTACTCATCACCGTCGGTGCTGTCCGTTGTTCTGTCCAG GGGTGATTCATGACCACCATCGTAAACGACAGTGGCTTCATCCAGGAAAG ACATAGCACGCGAGGACGCCACTCACTCCTTCTGGTCACTGTGCTCCACC GAGGTGTCAGCAGTGACAAAACTCGCCTCAAAGATCACCCAGTCCATCAC AAGCAGGGGCGGCCCACAAAACGGGAAGTTTTAATCGTTTGCACAGCAAG CAGGGACGAAAAATCTGGTTCTGAATGTGTACGATACCTCAGACCAGATC CTTTTGGGACAGACAAAAGAATTGCAGGGTGTTGGGTTTAAACAGAAAAA CCGATTCCATCATCAGGGAGCTAACTTCTTGTGAGAGACCCGTCTCCTCA CTCCCCCCCCCCACAGGATCATAATCATTCGGTGCCGTTACCAGTCCTGC ACCCCTGGATGCTGTTGTTGCGTTATTCCAACTCAGGGCGTGCCGTTCCG CTGTCTCGCTACCTACTCTCACTAGTCCTGTGCCCTTTGATGCAATAACG TTCTCCCTGCCAAGAGCTTCCTCCGTTCCGCCGTCTCGCTATGTACACAC CGTCGCCAGTCCTGTGCCCCTTGATGCGGTTGCATTCTTCCGACTCAGCA GGGCTGGCGTCGCCCCGCCCGCCTGCCTGCGTTGTCCGCCCCTGCTGTTC GCCGGCACAACAGGCAAGGAGCTGACCCCCGAGGAGGTGGCGCACGCCTT CCGGCTGCTGGACACGGACGCCTCGGACTACATTGAGTTCCGCGAGTTCC TCGCCTGGTGGCGCCGCGAGAAGGACTCGCTGCCCAACAGCCGACGCATC AGCATGGTGGGTGGGGCAGGCCGGTCTCCCCCCCTCCCTTCCCCCTCGCC TCACCCCCCATTGTTGTGCTCCTGCCCCTGCGGTCGTGCCACCACCATCA TCATCAACGACTACTGCGGACTGCGGCCAAAATGAAAACTAGGAAGAAGG AAGGCTGAGGAAGAAGGCGGCGAAGGAAGACGATACAGAACACGAAAACG ATCACTTTCCCTCAACAAGGTGTAGAATATAAAATATACATACATATTGA GATTGTGGCGCCAGAATTGGATTCTTGAGAATAATCAATGACAGATTGAT AAGGACACTTTGTTGGATGATAAAAGTGTCCTTATCACTCTGTCATTGAT TATAAATATACCCAGTCCGTTAAAAAGGTCCCAATATATCAGGAGCCACT CGCTCGACAACAGCAGCAGTGATGGAAACAACAAGGGTCCCTCCCTGTAT CAGGAGCCACTCACTCTACAACAGCAGATTTACATGTCCTTTCCGGAAAT ATACACACATCGATTGTCGAAGCACCATAAAATAAGAGCGAAGAACATGA GAACAATGACAAGGAAAAACAAGCAGAAACGAAAGAAAGAAACACAGAAG AAGTAAGAAGCAGTTGACCGTTGACCGTTTGTCGTTGCTAGGGTCCAAAA GTAGACGGCAACGACTTGCCATTTCCCCCGAAAAAATCAGAGAGTGGAAA AAGAGGCTGATTTCCTCATCGAGTATGGCCGGAACGAGGAAAACCCTCCT CCAAAGATCTTCAGATTCTCCGTCTGTTTTTTTTTGTAATTGGTTTCACT TTCTCCCGCAGAGCAAAGTGGGTCACTCTGCGTAAAAAATTTGGCAAAGT GGGATCCGTATCCAAAAAGACTACCTGGTGCGCTCTGACGGGTCAAAACG TGCATCCAAAAAGAAGCTTAACATTTCAAAATCGTTTATTTTTTACATCT GGTGAATTACTTTTCCCAAACTGCAAACGAGTGTATAGATTCAAGATGTG AAAGACGTTTTATTAAAAAAAAAAAAAAAAAACTGCTCTCTCATGCGACC TACCGCCTGCATGCCTGCATACATTTTTTTTTTTTTTTTTTTTTTTTTTT GTGTCTACGCAGTACCACCATGCTGTTGATGTTGCGGCCAGTCCCCATAT CCTTGACAGTCAGTGTTTCTTTCGCGGTCATTGACCGAGATCGCATCGAT CCGATACTTGCGGGATGATTCCCATCAGGCGTGGCGCATTTCCAGGTCTG AGGCCGCTCTGGTCCGTGTTCATTCTTGTCTCACGTTGATATTCCCCCAC CAATCTCTCAGTATTTCGTGTTTCGAATTTCGAAGCGTGATTCGCGATTT TGATCCATTTCGGCACACCTAACTGTCGCCAATTCGGCAAGCGCTGGGTA TCGATCCTGCACCTCTCGCTTCGAAGTCGACTTCCGAAGGGTTGAGCTAT TCCGGGTTAAATATACATTGGCAGTACACCTCCCAGTTACTTTGTGCTGC AGAGTGTGATATGTCCTTGTTTCTTAACATTACCTGCCAGACTTTAATTT AGCAATTGGAACATCCCTGCAACAACAAACTAATACGAGAAAAGGCACCT TGGAGAAGAGGTAGAATGTTGTGCATTTTGTCTCCTCTTGGGAGATATAC AGTATTATCCGAACGTCTTGTATTAAAATTTGGCCATGTTTTATGAAACT CTAAAAATTTCAGCACTTCTTCACACTACTTTTTTCTTTTTATGAAAAAA GATGAAAAAAAGATGGCAGAGAGGTGCAAAGAAGGAGCCTGTCACAAATA GGCTTTGTTTTTGTGGAAAATTTATCATTCTTTTGAGATTTTGCCTGGAA TCTGGAAATTACAAAATCCCCCAAAATCTCAGCATTTTCGAGAAATTCCC GCTGGCTGAAAGTTGTTTGCATGCTGTTTCATTCTTCGGGACATCCGGTG ACATGATGAGCTGGCGGAACCCCACCCCCTCCAAGGTCACAAGCTTGGTG CTTTACATTTGGATTACTTTGATTTGGTGCCTGGTTTGGCTCTCATTGTC ATTTGTTCAGTCTTTTTTACAGTGCGCGTTCTCGTTGGCCACCAGCACTC GTTGGCTCGTTGGCCAGGGTCTAATCTTTTTGATTTGCCGATCCTGGGCA AATCAAGTTCAGTGCTGCTTTTCTTGCTTGCCGTTGGGTCAGTGCCTCTG TTTTTTTTGCATGATTGTCAGTTTTGGCAACGGTTTTTGTGCTTGCTTCT AGCAGCAGAAGGAGGAGGGTCTCCTGTTTGGGCTGTTGTTTCTAAGAGTG CCGATGATGTTTGTTGATTGCTTTTAGTAGTAGCTGGCTGCTAGTAGTAG CTTCTATATACATTCCCACTGATATTTTGGACAACAGTTGTACTGACCAT GGCTTTTTTCAGCCGAAACCGGTCTGCAACAGTCCTTTTAAAAATATTGG AATCTCACATTATATATAGTTTCATGATGTTATATTTCATGCGCTATAGC AGTTATTTTGGCCTTGGCCTTACTTTGATGCTGTGTCCGTGAAGCATTAT ACTGTGCCAACATCTTCCTTTTGGAATATCCTATGCCCTGATCGATGGTC TTATTAATCAACTCCACAAAAAGACTTTAGAATTTCGGAGATCCCTACCA GCACTGCACAAAATTTGTCCGGCCTCATTTCATTTGAGGCCGAACAACGA GCATAGAGAATTTTCAATCAACTGCTGCCTCCTGCCTCTTGAATTCTTCT TCTTCTTCTTTGCAGCAATTTAGCCACGTGGGGCTATCCTCACTGATGGC GGAAGCGGCTTGGAAGCATCTTCTACTTCAAACCCAACACCTTCACAAAT ACACTTCTTCTATACTCATTTATTTATTTTTTTGTCAGCGTTTAAGCACA AAGTGAAGAAGAAGAACAGTTCAGATATAGGCTGTTGCTAACTCTGCTCA TGTCATTTGCATTTTCCCTCCCTGTCTTCATTCCTTCCTTCCTTCCTTCC TTCCTTCCTTCCTTTCTTTCCTTCCATTTTTCTTCTTTTTCTTCTGAACC TTATGCTGTGCCTGTAAACATATGTGATGTTGGAGCTGCTTTCTGAATGG GATGAATCCCTCTATTATGTGCTGCTGTGCTATTGGAGGAGAGCTTCAAC CATGGCTAAGGCTGTTCCAAATCTCTGGGATTCTTTTCTGCACAGCTCCT TCTGCTATATTACATGTGACTAGCGAGCGGCTGTCCATGAGCATAAATGG CTGTCCATGAGCATAAATCTGAAAAAACATATATGCCTCATTTGGCCGCT AGCGTAAGAGCGGCCCGAGGACGGTGTTGAGTCCATGAGCCAACCAGACA TTCAAAAGCTGGTGGAAAAAGTGGAAAGCCAATATCCTTCCCAGGGAAGA CTTTCCAGCTCCAGAGGACTGGTGAAGAGCGAAAGTGGGATCCCCAATTT TCAGTACTTATACAAAATATTCTGAATTCTTCAGTCCAGCGAATGTGTTC TGCTATATTCTGTGTTACAGCCGTCACCTCACAGCCAAAATCTCGCCCCA CAACAAGCCCTTTAATAGTGCCCCCCCCCCAATGCAAGTCTTCCTGAGCA CCAAAAACACCAAAAAAGACAAATCTGGTACTTTTACCATTCTTTGTAGA CCCTCCTTGAAAAAAAAAAAAAGAAGTGCCCCCAACTTCTTTTCAGCACC TCACGATTTTTTTGTCAAGGCAGCCCAGCTGGGAGACTGGGGGTCAGGCC AAGTGGTCAGCCCCCAAAGTAACGAGTAGATCTTTTATGAGTGGATTAAT GTAGAAATAGGGAATAGGTAGTTGGTAATTATGAGAAAGGGAAACATGGT TCACAGCACGTGGTCTATGAACAGCATCAGCATGGTAACATACAGGGATG GTTGTTGCCAGCATATAGCAGCAGAGCAGCTGTCAAATGGGTGACGGCCA GCATAGTTGTTGTTGTGTACGTCAGCCACACATCATCATCAAGTCATCAG GTTTTGTTCACTCTCTAAAAGTGTGCGGGTTGCTTACAACAAACCAACTG CTGTGTTGCTGTGTGAGCAGACGATGCCAACAAAACACCGCTCCACCACA GCGGACAGGTGAGCACAGCAGCACAGTAGTAGGAGAAAAGAAATCCCCAC CATTGGGCAAAGCTGAAGCTGTGTGAATAAGAGCTCCACCAGAAAGAAAG CTCCACCAGAAGTTGAACTCCACCAGAAATGGAATATCACCATAAAGAAA AAGCCCCACCAGAAGTGGAACTCCACCAATTCATTTACCGTTATTTAGAG GCAGGTAGTTGCCCCATCTATATGCCCCATCTATATATCTAAACTGCCCA AGAGGGTCAGGGTGCCCCAAATGCTAAGTTGAATCAAAGCACAGAGGGAA GAGAGTAACAGCCTTTATAGAAGGTTTTAGCAGCAGCATAAACTCAATCG AAAACCAGTGCATCAAGAGTCTCCAGGCCCTGGCAGCAGGGGGTAGTGTC TCTGCCCCCACCGTTGATTCCAGTGCTGAGTAAACGAACGTGGCAGAGAG AGTCAAGAGCTTACAGAACGCGGTTCAGAAAAATGTGCTAATCAATTTAT CCAGAAGGGAGGAATGAAAATCTGTTTGAGTCACCAAATGATGAAGGAGG AGGAGAAGAGCCGTCGCCGTCGTCATCGTCGTTATCATCATCATGTCCAA GAACAGTTCATAATCATGTTCAAAAACAGTTAGACAAGAGCAGAAGAGTC AGAGTCCCAAGAAGAACACGAGCCATCCAGGCAGTCGGTCGATTGAAACG ATGGTGACTCTAGCCCAGGGCCACCCACTCCAGAAGTTGACGCAGAGTCA GACCAGCAGGTGAGCAGCAGAATTGACCTTCGAGAGTCTCCACAAGTCCC AGTTTGATGTAGATCGACGGGCAGAGATCTTGATCGAAACTCCATCCAGC GGGTCGCCGAGCGTACGCAGAGGCGATACGATCAGTGGTTGCCCATAACC GATGTTTTTTGTCAACACAGCCCAGCAGGGAGACTGGGGGCCAGGCCAAG TGGCCAGCCCCCAAAGTAACGAGTAGATCTTTTATGAGTGGATTAATGTA GAAAAAGGGAACAGGCAATTGGTAATTATGAGAAAGGGAAACATAGTTCA CAGCATGTGGTCTATGAACAGCATCAGCATGGCAACATACAAGGATGGTT GTTGCCAGCATAGCAGCAGAGCAGCTGTCACAAATGGGTGGCTGTTGTGT ACGTCAGCCACACATCATCATCAAGTCATCAGGTTTTGTTCACTCTCTGA AAGTGTGCGGTTGCTTACAACAAACCAACTGCTGTGTTGCTGTGTGAGCG GACGATGCCAACAAAACAACGCATTATTTCTATGCCCCAAGATCCATTCC AATCCACTTGTGACCGTAAATTTGAGAAGGCTGTGTGTGTGCGTGTGTTT CTGATCCTAGTATATGTAAAAACAAAAAACAAGGTGTGTAGTATGGTGCA AAGATTTGAAATGAAAGCAGTGGTGAGGTGGAGTACAATATGCATGTATA ATTAAAAAATCAAAAGCAGTGTTTTTTCACAACCATTGCAACTACTAATG CTCATAAAATTCAATAAAAGTGTGTTGTTCTTCTTGTTGGTACTCGTTTG CTTCAATTTCGTTTTGCAGGAGGACGGGATCCTGGATGAGAGCCCTTCAA GAAGAAAGTAGCAGTTGTTCGAAGAGAAAATAATGCACACTCCTTCCTTA ATTAATACTTTTCTTACTCATCGTCATGTTGAACTATAAATAAACTAGTA A
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig98:709187..725687+

>mRNA_H-akashiwo_Contig98.11.1 ID=mRNA_H-akashiwo_Contig98.11.1|Name=mRNA_H-akashiwo_Contig98.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig98:709187..725687+ (Heterosigma akashiwo CCMP452)
ATGGTCGACCAGCTCATGGGCAAGGGAGGGGAACGCGCGGAGCAGAGCGA
CTTCTCCGACGAGCAGATCCAGGCCATCTACAACGACCTGGACGTGAACG
GCGACAATCAGGTCACCATCATCGAGTTCGGCGAGCTGCTGGAAGAGCTG
GGCAAGGAGCTGACCCCCGAGGAGGTGGCGCACGCCTTCCGGCTGCTGGA
CACGGACGCCTCGGACTACATTGAGTTCCGCGAGTTCCTCGCCTGGTGGC
GCCGCGAGAAGGACTCGCTGCCCAACAGCCGACGCATCAGCATGGAGGAC
GGGATCCTGGATGAGAGCCCTTCAAGAAGAAAGTAG
back to top