mRNA_H-akashiwo_Contig98.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.1.1
Unique NamemRNA_H-akashiwo_Contig98.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A7S3Y488_HETAK (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y488_HETAK)

HSP 1 Score: 178 bits (452), Expect = 3.160e-56
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHG+
Sbjct:   14 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGS 110
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: F0YAB4_AURAN (40S ribosomal protein S25 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YAB4_AURAN)

HSP 1 Score: 151 bits (382), Expect = 9.550e-46
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARH 288
            PPK QQKSKE KMAAA+AGGKS+KKKWSKGKVREKMANKVL+DEDTY RLL EIPKMKLITPSALVERLKVNGALARA++ EL EKGLIK+V+ H
Sbjct:    2 PPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYARLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYH 96
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: D8LTW6_ECTSI (40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTW6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.820e-41
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PPKTQQKSKEQKMAAA+AGGK RKKKWSKGKVREK+AN+VL++EDTY R L E+PKMKLIT S LVERLKVNG+LARA++ EL EKGLI++V  H A
Sbjct:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYTRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHA 98
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: W7TVF9_9STRA (40S ribosomal protein S25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVF9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.110e-40
Identity = 75/96 (78.12%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTY-ERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARH 288
            PPK QQK+KEQK+AAA+AGGKS+KKKWSKGK+REK+ANKVL+DE+ Y  RLLTEIPK KLITPSALVERLK+NG+LARA+L EL EKGLIK V+ H
Sbjct:    2 PPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVH 97
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A7S2G994_9STRA (40S ribosomal protein S25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G994_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.010e-38
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PPKTQQKSKE KMAAA+AGGK +KKKWSKGKVREK+ANKVL++E+ YERL TE+PKMKLITPSALVERLK+ G+LARA++ EL  + +IK ++ H +
Sbjct:    2 PPKTQQKSKEAKMAAAMAGGKGKKKKWSKGKVREKVANKVLFEEELYERLKTEVPKMKLITPSALVERLKIGGSLARAAIKELESEEMIKRLSYHSS 98
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A835ZCY0_9STRA (40S ribosomal protein S25 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 5.800e-38
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PPK QQKSKEQK AAA+AGGKSRKKKWSK K R+K+ N+VL+ E TYER++ E+PKMKL+T SALVERLK+NG+LARA++ EL EKG+I+ V+ H A
Sbjct:    2 PPKVQQKSKEQKAAAAMAGGKSRKKKWSKNKARDKILNEVLFKEPTYERMMNEVPKMKLVTTSALVERLKINGSLARAAIRELEEKGVIRRVSHHSA 98
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A485LJ93_9STRA (40S ribosomal protein S25 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LJ93_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.170e-37
Identity = 71/96 (73.96%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSR-KKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARH 288
            PPKTQQK+KEQKMAAALAGG+ + KKKWSKGKVREK ANKVL+D++TYER+  E+PKMKLIT SA+VERLKVN  LARA++LEL +KG IK V +H
Sbjct:    2 PPKTQQKTKEQKMAAALAGGRGKGKKKWSKGKVREKTANKVLFDQETYERMCKEVPKMKLITASAVVERLKVNATLARAAILELEQKGEIKCVTKH 97
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A067CYE5_SAPPC (40S ribosomal protein S25 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYE5_SAPPC)

HSP 1 Score: 125 bits (313), Expect = 3.200e-35
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSR-KKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PPKTQQK+KEQKMAAALAG + + KKKWSKGK REK  NKVLYD++ YER+  E+PKMKLIT SA+VERLKVN ALARA++ EL  KG IK V++H A
Sbjct:    2 PPKTQQKTKEQKMAAALAGSRGKGKKKWSKGKAREKTQNKVLYDQEAYERMCKEVPKMKLITASAIVERLKVNAALARATIRELELKGDIKVVSKHSA 99
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: F0WED2_9STRA (40S ribosomal protein S25 n=2 Tax=Albugo TaxID=65356 RepID=F0WED2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.710e-35
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    4 PPKTQQKSKEQKMAAALAGGKSR-KKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARH 288
            PPKTQQK+KEQKMAAA+AGG+ + KKKWSK KVREK+ANKVLYD++TY+RLL+E+PKMKLIT SA+VERLKVN  LAR+S+ +L   G I  V  H
Sbjct:    2 PPKTQQKTKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETYDRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAH 97
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BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Match: A0A7S3HEM3_9STRA (40S ribosomal protein S25 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HEM3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.160e-34
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    7 PKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA 294
            PK QQK+KEQK+AAALAGGKS+KKKWSKGK+REKM  KVL+DED ++RL  E+PKMKLITPSALVERLK+NG+LARA+   L E+G I ++  H A
Sbjct:   13 PKVQQKTKEQKLAAALAGGKSKKKKWSKGKLREKMNAKVLFDEDGWKRLQEEVPKMKLITPSALVERLKINGSLARAACKYLLEEGKISKIETHHA 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y488_HETAK3.160e-5698.9740S ribosomal protein S25 n=2 Tax=Sar TaxID=269873... [more]
F0YAB4_AURAN9.550e-4685.2640S ribosomal protein S25 n=2 Tax=Pelagomonadales ... [more]
D8LTW6_ECTSI1.820e-4177.3240S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID... [more]
W7TVF9_9STRA3.110e-4078.1340S ribosomal protein S25 n=2 Tax=Monodopsidaceae ... [more]
A0A7S2G994_9STRA1.010e-3871.1340S ribosomal protein S25 n=1 Tax=Florenciella par... [more]
A0A835ZCY0_9STRA5.800e-3869.0740S ribosomal protein S25 n=2 Tax=Tribonema minus ... [more]
A0A485LJ93_9STRA1.170e-3773.9640S ribosomal protein S25 n=7 Tax=Aphanomyces TaxI... [more]
A0A067CYE5_SAPPC3.200e-3570.4140S ribosomal protein S25 n=4 Tax=Saprolegniaceae ... [more]
F0WED2_9STRA9.710e-3569.7940S ribosomal protein S25 n=2 Tax=Albugo TaxID=653... [more]
A0A7S3HEM3_9STRA1.160e-3469.7940S ribosomal protein S25 n=2 Tax=Eukaryota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:38927..40014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009037394.1
Preferred nameRPS25
PFAMsRibosomal_S25
Model size294
Max annot lvl2759|Eukaryota
KEGG rclassRC00109,RC00110,RC00158,RC00219,RC00332
KEGG koko:K02975,ko:K10886,ko:K13998,ko:K20365
KEGG ReactionR00936,R00937,R00939,R00940,R02101,R02235,R02236
KEGG Pathwayko00240,ko00670,ko00790,ko01100,ko03010,ko03450,map00240,map00670,map00790,map01100,map03010,map03450
KEGG ModuleM00053,M00126,M00177,M00179,M00841
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009506,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042274,GO:0042594,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990928
Exons2
Evalue1.57e-46
EggNOG OGsCOG4901@1|root,KOG1767@2759|Eukaryota
Ec32 ortholog description40S ribosomal protein S25
Ec32 orthologEc-12_004050.1
EC1.5.1.3,2.1.1.45
Descriptionstructural constituent of ribosome
Cds size294
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.3808198-CDS-H-akashiwo_Contig98:38926..390971681388065.3808198-CDS-H-akashiwo_Contig98:38926..39097Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 38927..39097 +
1681388065.400197-CDS-H-akashiwo_Contig98:39891..400141681388065.400197-CDS-H-akashiwo_Contig98:39891..40014Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 39892..40014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.1.1prot_H-akashiwo_Contig98.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 38927..40014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.1.1

>prot_H-akashiwo_Contig98.1.1 ID=prot_H-akashiwo_Contig98.1.1|Name=mRNA_H-akashiwo_Contig98.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
QPPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYER
LLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGA
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mRNA from alignment at H-akashiwo_Contig98:38927..40014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.1.1 ID=mRNA_H-akashiwo_Contig98.1.1|Name=mRNA_H-akashiwo_Contig98.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1088bp|location=Sequence derived from alignment at H-akashiwo_Contig98:38927..40014+ (Heterosigma akashiwo CCMP452)
CAGCCGCCCAAGACACAGCAGAAGTCGAAGGAGCAAAAGATGGCTGCCGC
CCTCGCGGGTGGTAAGTCCAGAAAGAAGAAGTGGTCTAAGGGAAAGGTCA
GGGAGAAGATGGCCAACAAGGTTCTCTACGATGAGGACACTTACGAGCGT
CTCCTGACCGAGATCCCCAAGGTATTACTATTTTTTTTTCATTTACTTTT
TTTCTATCGAAGAGTTCTCCCTTCATGAAAAAAATGCTCCGATCAAATTA
AAAAAATGCACACATTGTTTTGCATTTATAAACTGTTTGATAGCAAAGGG
CGTGGGTTACTAAACATGCTAAAAAATGAGCTCGAGCCTGATGTTAAACT
AGTTTAATACAGCAGCCAGTTATCCACAAATATGCAGCACCTCATTACAA
CTGAGCATGACTGGATGTGATGAAAGTCTGCCACCTTTGGTAGGCGGTAT
ATTTGTTCTGGGAATGGATCTCTGATCCTACGAACCCTTCCAGAATCATG
TACTTTGCCTTGACCAAACGGCCCAGCGCTTGCTGATGTCTGATCCATCA
TGTTCTTGATTTTAATTTGAGTTGGTAATGTGCTGCCTAAACCTGAGCCA
CCAATGGGTACCAATGGGTGGACATGATGAAATACGCCAAAATGGTAGCG
GTACATTTGTTCTGGGAATGGATCTCTGATCCAACGAACCCTCCCAGAAT
CATGTGCTTTGCTCTGACCTAATGGCCCAGCGTTTGCTGATGTCTGATCC
ATCCCTTTACCCAAAAAATTCCCGGGTGGGGTGCTGGAGTGCTGGAGATG
CACGTCCCAGGTTAACACCAGTTTGAAGAAACAAGGACCGCCACCCTACA
GATCAGCCCTCGCTGATGTTCAGAGCTGTCCTTGCGCTTGACACTTGCAG
CCTTCCGCTGCCCTTCAGCACCCCCAGCCCGACCCGCCCGCCCCCCGCCC
CGGCCCGCTCCTCAGATGAAGCTGATCACCCCCTCGGCGCTCGTGGAGCG
GCTGAAGGTGAACGGCGCCCTGGCCCGCGCCTCCCTGCTGGAGCTGCACG
AGAAGGGCCTCATCAAGGAGGTCGCCCGCCACGGTGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:38927..40014+

>mRNA_H-akashiwo_Contig98.1.1 ID=mRNA_H-akashiwo_Contig98.1.1|Name=mRNA_H-akashiwo_Contig98.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig98:38927..40014+ (Heterosigma akashiwo CCMP452)
CAGCCGCCCAAGACACAGCAGAAGTCGAAGGAGCAAAAGATGGCTGCCGC
CCTCGCGGGTGGTAAGTCCAGAAAGAAGAAGTGGTCTAAGGGAAAGGTCA
GGGAGAAGATGGCCAACAAGGTTCTCTACGATGAGGACACTTACGAGCGT
CTCCTGACCGAGATCCCCAAGATGAAGCTGATCACCCCCTCGGCGCTCGT
GGAGCGGCTGAAGGTGAACGGCGCCCTGGCCCGCGCCTCCCTGCTGGAGC
TGCACGAGAAGGGCCTCATCAAGGAGGTCGCCCGCCACGGTGCG
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