mRNA_H-akashiwo_Contig974.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig974.9.1
Unique NamemRNA_H-akashiwo_Contig974.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig974.9.1 vs. uniprot
Match: A0A140ECJ4_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECJ4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.490e-8
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  193 RKSVSKAEKVFQGRAISCSFSSVFHLRKAGMKEADFQLVTRIFKVGILIPL 345
            R ++S AE V   RA+SCSF+SVFHL+KAGMK A+F  VTR+FK  ++ P+
Sbjct:  240 RPAMSSAEGVMSRRALSCSFTSVFHLQKAGMKAAEFARVTRLFKHAVIAPM 290
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BLAST of mRNA_H-akashiwo_Contig974.9.1 vs. uniprot
Match: A0A140ECJ3_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECJ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.580e-8
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  193 RKSV-SKAEKVFQGRAISCSFSSVFHLRKAGMKEADFQLVTRIFKVGILIPLGAFGLLAGG 372
            R SV S AE V   RA+SCSF+SVFHL+KAGM+  D Q VT +FK  +++P+  F   AGG
Sbjct:  229 RSSVPSSAEAVMSRRALSCSFTSVFHLQKAGMRPKDLQKVTSVFKKAVVLPMAVF---AGG 286
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BLAST of mRNA_H-akashiwo_Contig974.9.1 vs. uniprot
Match: W7UBW7_9STRA (Nadh dehydrogenase subunit 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBW7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.290e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  190 PRKSVSKAEKVFQGRAISCSFSSVFHLRKAGMKEADFQLVTRIFKVGILIPLGA 351
            P  S   A  V   RA+SCSF+SVFHL+KAGM   DFQ VT +FK  +++P+ A
Sbjct:  254 PPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAA 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig974.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A140ECJ4_9STRA1.490e-856.86NADH dehydrogenase subunit 11 n=1 Tax=Monodopsis s... [more]
A0A140ECJ3_9STRA2.580e-854.10NADH dehydrogenase subunit 11 n=1 Tax=Vischeria sp... [more]
W7UBW7_9STRA6.290e-751.85Nadh dehydrogenase subunit 11 n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig974contigH-akashiwo_Contig974:340066..340868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size692
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.5163012-UTR-H-akashiwo_Contig974:340065..3403011681388064.5163012-UTR-H-akashiwo_Contig974:340065..340301Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig974 340066..340301 -
1681388064.5719416-UTR-H-akashiwo_Contig974:340685..3408681681388064.5719416-UTR-H-akashiwo_Contig974:340685..340868Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig974 340686..340868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.5359478-CDS-H-akashiwo_Contig974:340301..3404811681388064.5359478-CDS-H-akashiwo_Contig974:340301..340481Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig974 340302..340481 -
1681388064.5561385-CDS-H-akashiwo_Contig974:340592..3406851681388064.5561385-CDS-H-akashiwo_Contig974:340592..340685Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig974 340593..340685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig974.9.1prot_H-akashiwo_Contig974.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig974 340302..340685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig974.9.1

>prot_H-akashiwo_Contig974.9.1 ID=prot_H-akashiwo_Contig974.9.1|Name=mRNA_H-akashiwo_Contig974.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=91bp
MEPRKSVSKAEKVFQGRAISCSFSSVFHLRKAGMKEADFQLVTRIFKVGI
LIPLGAFGLLAGGKFCWDRLSRDNTQNVFKGVYASKVNDS*
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mRNA from alignment at H-akashiwo_Contig974:340066..340868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig974.9.1 ID=mRNA_H-akashiwo_Contig974.9.1|Name=mRNA_H-akashiwo_Contig974.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=803bp|location=Sequence derived from alignment at H-akashiwo_Contig974:340066..340868- (Heterosigma akashiwo CCMP452)
GTCTGACTCTGACTCTGACTCTTCTGGCTTCTTCGGGGGGCAGGGTGGTC
GGTGTCGATTTCAGGCTTCCTTTTCTTCGAAGTCGAAGGCGAAAGGGAGG
AGGAGTGTCTGTGTGGGCTGGGTACTACCTATACTATTGCTTGCTTCTAG
CATCATTGAAGTAACACACTCGAAGAAGTTGTAATGGAGCCAAGAAAAAG
TGTTTCCAAAGCAGAAAAGGTGTTCCAGGGACGGGCGATATCTTGCTCGT
TCTCGTCTGTGTTTCATCTCCGAAAGGTCAGTCAGTGTTGGTAGATTTTT
ATAATGCTTATTCCATGAGTCACAAAAAAGAGCTAAAACTGAAAGACACT
GTCATGATCCTACGATTTGCCCAACATATTACTCCAGGCTGGCATGAAGG
AAGCAGACTTCCAACTTGTCACAAGGATATTCAAGGTTGGCATCCTGATC
CCATTAGGGGCGTTTGGCTTGCTAGCTGGTGGTAAATTTTGCTGGGATAG
GCTTTCTAGAGACAACACCCAAAATGTTTTTAAGGGGGTGTATGCAAGTA
AAGTTAATGATAGCTGATGGAGGAAGAAAGGAGGTGTGTGTGGGGGGGGA
GAAAGGGGAAGACAGCGCAATTCTTCTTCTCCTTGTCATGGAGGAGTGAA
ATATTGTAGTGTGGCATTCTTCTGGTCAAATATTATATAGTTTCCTGTTG
TGACGGCGGTGGAATTACTTCTCGGACTAGCGCTGTGTTCTATTGTCCAG
ACGTTAATAATATATATAGTATCTACATAAGAAGCAGAAGAAAATATATT
ATC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig974:340066..340868-

>mRNA_H-akashiwo_Contig974.9.1 ID=mRNA_H-akashiwo_Contig974.9.1|Name=mRNA_H-akashiwo_Contig974.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=273bp|location=Sequence derived from alignment at H-akashiwo_Contig974:340066..340868- (Heterosigma akashiwo CCMP452)
ATGGAGCCAAGAAAAAGTGTTTCCAAAGCAGAAAAGGTGTTCCAGGGACG
GGCGATATCTTGCTCGTTCTCGTCTGTGTTTCATCTCCGAAAGGCTGGCA
TGAAGGAAGCAGACTTCCAACTTGTCACAAGGATATTCAAGGTTGGCATC
CTGATCCCATTAGGGGCGTTTGGCTTGCTAGCTGGTGGTAAATTTTGCTG
GGATAGGCTTTCTAGAGACAACACCCAAAATGTTTTTAAGGGGGTGTATG
CAAGTAAAGTTAATGATAGCTGA
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