mRNA_H-akashiwo_Contig97.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig97.14.1
Unique NamemRNA_H-akashiwo_Contig97.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig97.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig97contigH-akashiwo_Contig97:1190920..1191857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size938
Hectar predicted targeting categorysignal peptide
Exons1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388062.9265165-UTR-H-akashiwo_Contig97:1190919..11909971681388062.9265165-UTR-H-akashiwo_Contig97:1190919..1190997Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig97 1190920..1190997 +
1681388062.9505305-UTR-H-akashiwo_Contig97:1191576..11918571681388062.9505305-UTR-H-akashiwo_Contig97:1191576..1191857Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig97 1191577..1191857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388062.9368992-CDS-H-akashiwo_Contig97:1190997..11915761681388062.9368992-CDS-H-akashiwo_Contig97:1190997..1191576Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 1190998..1191576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig97.14.1prot_H-akashiwo_Contig97.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig97 1190998..1191576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig97.14.1

>prot_H-akashiwo_Contig97.14.1 ID=prot_H-akashiwo_Contig97.14.1|Name=mRNA_H-akashiwo_Contig97.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=193bp
MKLFATLFFFSCLVASSLALGKVPGNHPMGLNLDRAHRAPAGPADVGVVA
AGEVAVVNAFSTRGGGGVDLKSVKFTTAMVPYFGFFALGLALAPEQLFGG
NSIIKMSYFSGPVGAVGTMFARIAGVGLGLLAGAPYLGVAENAYTKLSLG
FHVGTLPVIILNIMDGSPFNAQMWYLQLALNALLLFWGYKNL*
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mRNA from alignment at H-akashiwo_Contig97:1190920..1191857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig97.14.1 ID=mRNA_H-akashiwo_Contig97.14.1|Name=mRNA_H-akashiwo_Contig97.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=938bp|location=Sequence derived from alignment at H-akashiwo_Contig97:1190920..1191857+ (Heterosigma akashiwo CCMP452)
GCCCACTTTTTGGTTTGCTGGCACTCCTTGCCCTTGCGTTCTTGAATATA
TATTCTCCTGACCAAACGAGGCGTAAAAATGAAGCTTTTCGCTACTCTGT
TTTTCTTCTCCTGCCTGGTTGCCAGCTCCCTGGCTCTTGGCAAGGTACCC
GGCAACCACCCTATGGGTTTGAACTTAGACCGTGCCCACAGAGCACCTGC
CGGGCCTGCCGACGTCGGTGTGGTGGCGGCAGGTGAGGTCGCAGTAGTAA
ATGCTTTCAGTACCCGTGGTGGAGGAGGAGTAGATCTGAAGTCTGTCAAG
TTTACAACTGCGATGGTCCCATATTTCGGCTTTTTTGCTTTGGGGTTGGC
GTTAGCTCCAGAACAGCTTTTTGGAGGCAATTCAATCATCAAAATGTCCT
ACTTTTCTGGGCCAGTTGGCGCGGTAGGCACGATGTTTGCGAGAATAGCC
GGCGTTGGCTTGGGTCTACTAGCAGGCGCTCCGTACTTGGGAGTGGCTGA
GAATGCTTACACGAAGCTGAGCTTGGGTTTTCATGTTGGGACGCTTCCCG
TTATTATTCTAAACATCATGGATGGCTCTCCCTTTAACGCTCAAATGTGG
TATTTGCAGCTGGCACTTAATGCTTTACTGCTGTTCTGGGGTTACAAGAA
TCTATGAGAGCTGTGTGTGCTTGCATGCTGCAGCATAGAAAAGAATATAA
TCCGTAATCCATGCAGCGAGCGGCTCCGTTTGGGGGCACACGCTGGTAAG
CAGTGAGCGTGCTCACACAGCAGAAGCGACCCGTTTCCCAGCCCTTGTTT
TGGCAAACAACCTTTACCACTAGTAGCCTTTTGTTTGTTGGCTGTTTTTG
GCTGCTGTACATCAAGCTAACCCTTCCTTTTCTTTTCTTTTCTTTTCTTC
ATGCTAAAATAAAATATCAATAATAAGTAATCTTCTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig97:1190920..1191857+

>mRNA_H-akashiwo_Contig97.14.1 ID=mRNA_H-akashiwo_Contig97.14.1|Name=mRNA_H-akashiwo_Contig97.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=579bp|location=Sequence derived from alignment at H-akashiwo_Contig97:1190920..1191857+ (Heterosigma akashiwo CCMP452)
ATGAAGCTTTTCGCTACTCTGTTTTTCTTCTCCTGCCTGGTTGCCAGCTC
CCTGGCTCTTGGCAAGGTACCCGGCAACCACCCTATGGGTTTGAACTTAG
ACCGTGCCCACAGAGCACCTGCCGGGCCTGCCGACGTCGGTGTGGTGGCG
GCAGGTGAGGTCGCAGTAGTAAATGCTTTCAGTACCCGTGGTGGAGGAGG
AGTAGATCTGAAGTCTGTCAAGTTTACAACTGCGATGGTCCCATATTTCG
GCTTTTTTGCTTTGGGGTTGGCGTTAGCTCCAGAACAGCTTTTTGGAGGC
AATTCAATCATCAAAATGTCCTACTTTTCTGGGCCAGTTGGCGCGGTAGG
CACGATGTTTGCGAGAATAGCCGGCGTTGGCTTGGGTCTACTAGCAGGCG
CTCCGTACTTGGGAGTGGCTGAGAATGCTTACACGAAGCTGAGCTTGGGT
TTTCATGTTGGGACGCTTCCCGTTATTATTCTAAACATCATGGATGGCTC
TCCCTTTAACGCTCAAATGTGGTATTTGCAGCTGGCACTTAATGCTTTAC
TGCTGTTCTGGGGTTACAAGAATCTATGA
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