mRNA_H-akashiwo_Contig967.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig967.5.1
Unique NamemRNA_H-akashiwo_Contig967.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig967.5.1 vs. uniprot
Match: A0A7S4DG95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG95_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 2.530e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   97 ARDRELAGEEYFGSEELLNLQKQHAVVLQRFWR 195
            ARDREL  +EYFGSEELLNLQKQHAVVLQRFWR
Sbjct:  143 ARDRELRAQEYFGSEELLNLQKQHAVVLQRFWR 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig967.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DG95_HETAK2.530e-1090.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig967contigH-akashiwo_Contig967:378086..379599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.3506603-CDS-H-akashiwo_Contig967:378085..3781811681388061.3506603-CDS-H-akashiwo_Contig967:378085..378181Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig967 378086..378181 -
1681388061.3616335-CDS-H-akashiwo_Contig967:379476..3795991681388061.3616335-CDS-H-akashiwo_Contig967:379476..379599Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig967 379477..379599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig967.5.1prot_H-akashiwo_Contig967.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig967 378086..379599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig967.5.1

>prot_H-akashiwo_Contig967.5.1 ID=prot_H-akashiwo_Contig967.5.1|Name=mRNA_H-akashiwo_Contig967.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
AGTRRRRSSSRAASRPSARRARRWRARPAPGRARDRELAGEEYFGSEELL
NLQKQHAVVLQRFWRGYLARRRA
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mRNA from alignment at H-akashiwo_Contig967:378086..379599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig967.5.1 ID=mRNA_H-akashiwo_Contig967.5.1|Name=mRNA_H-akashiwo_Contig967.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-akashiwo_Contig967:378086..379599- (Heterosigma akashiwo CCMP452)
GCCGGGACACGCAGACGGCGCAGTTCCTCACGCGCGGCCAGCAGACCAAG
CGCGAGGCGGGCACGCAGATGGCGCGCACGACCTGCACCTGGACGCGCCC
GCGACCGGGAGCTCGCGGGCGAGGTTCGGGGAGGGAGGGGGGGTGCGAGG
AAGGGGCCGGAACCCCACGGACTGTTGGGTGGGCGGCTCCTGTGCGTTTC
GATTACGTTGGCAGTTTCAGGAGGTGTGCAGGTAGGGAGGGACCACCAGA
TGCGAGATTCGAGGAGTTGGAACTCCTAACCTTTGGGCCATATATACACA
GCTCTCACGTTTCATTTCGTGGTATGTATTTTACTATTAGGAGTTGTAGC
AACTTATAAAGCATTATCTCGCTGACAAATGAAAGGTTTTTTTTTTTTTT
TTTTTGGAGGGGGTTCACATGACAGGTCAGGGTAAGTTGATTTCGAATTT
ATATTGGCCAAGTAAACACGTTTGGGGGAGAAAAAAAGGATGAGGGAGGG
GAAAGCCGTGCAACAACTCACTGAACCTTTGTTTTATTCACTGATTCGTC
CGCATGATTTCAATATGAACTCACTGAACTTTGACGAGAGCTTTTTCAGG
GCGTTCAACAATTTTTTTTCGAATGGAGGAGCTGCGCCCTCCATTTCTCT
CCCTATTTTTGCTCAAATGGAGGAGCACCCACTCAAGATGGAGGAGCAAA
AAAAAAAAGAAAAAAAAAGAAAAGAAAAAGGCCGCTTTGCAGATTCAGGC
AATAAAAGGCCGACTGCAGACCCATGTATAGTCTGGTGGTATTTGTCGAT
CAGTCTCCTTTTGAACATCGCCGCCAATGAATACCTAGCTTTTTCGGGGC
TGCCGTCGTCGTTATTATGTAGGGGCCCATCGTCGCCGCCTTTGGCAGGG
TCCGTGATATGGAGGCCGGACTTGGTCCTTGTAGTTATCCAAGAGGCTGG
ACCTTAAATAAAATAAAATCATCATCATCATCATCATCATCGCCGCCGCC
TTCGCCGCCGCCGCCGCCCTTGGTATGGTAAAGATTGTCAAATTTCTATC
AAAATGTTATTATTTAAAATATGAAAACTAGGAGAAAAATGGTGTTTTTT
TTCAGAAAATTATTTTCTAGGCGTAAAAAACTAGTAAACAAACCGAATTT
TAGAAATAACTTATTAAATCGCCATCGAATTAGAAAATAAAACAGTATAA
CCGAAACTTTGCAAAACTTTTCTTTCTACATTTTCTCCTCATCTTCTACT
TTGATACCCTCCCAAGATGGAGCTGCGCGCCCATTTCCAAAATTGCCAAA
ACACCGGGCGCGGTCCTTCAAACACGCGGCGCGCGCCGCGTGTCGCAGTC
TTGTTGAAAGCCCTGGTTTTTCCGCGCCCCGGCCCCGGCCCCGGCCCGGC
GGGGCGGTGCGGCGTCAGGAGTACTTCGGCTCGGAGGAGCTGCTGAACCT
GCAGAAGCAGCACGCGGTGGTGCTGCAGCGGTTCTGGCGGGGGTACCTGG
CCCGGCGGCGCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig967:378086..379599-

>mRNA_H-akashiwo_Contig967.5.1 ID=mRNA_H-akashiwo_Contig967.5.1|Name=mRNA_H-akashiwo_Contig967.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig967:378086..379599- (Heterosigma akashiwo CCMP452)
GCCGGGACACGCAGACGGCGCAGTTCCTCACGCGCGGCCAGCAGACCAAG
CGCGAGGCGGGCACGCAGATGGCGCGCACGACCTGCACCTGGACGCGCCC
GCGACCGGGAGCTCGCGGGCGAGGAGTACTTCGGCTCGGAGGAGCTGCTG
AACCTGCAGAAGCAGCACGCGGTGGTGCTGCAGCGGTTCTGGCGGGGGTA
CCTGGCCCGGCGGCGCGCC
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