mRNA_H-akashiwo_Contig966.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig966.5.1
Unique NamemRNA_H-akashiwo_Contig966.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig966.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig966contigH-akashiwo_Contig966:135963..139855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.976918-CDS-H-akashiwo_Contig966:135964..1359901681388060.976918-CDS-H-akashiwo_Contig966:135964..135990Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 135965..135990 -
1681388060.9869456-CDS-H-akashiwo_Contig966:136282..1363251681388060.9869456-CDS-H-akashiwo_Contig966:136282..136325Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 136283..136325 -
1681388060.9968874-CDS-H-akashiwo_Contig966:139777..1398551681388060.9968874-CDS-H-akashiwo_Contig966:139777..139855Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 139778..139855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig966.5.1prot_H-akashiwo_Contig966.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig966 135965..139855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig966.5.1

>prot_H-akashiwo_Contig966.5.1 ID=prot_H-akashiwo_Contig966.5.1|Name=mRNA_H-akashiwo_Contig966.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
GEGPRAPRAGRDPGPRGAPAPGAAVRVVLSQYAVCTADRFGLRPDLPAG
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mRNA from alignment at H-akashiwo_Contig966:135963..139855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig966.5.1 ID=mRNA_H-akashiwo_Contig966.5.1|Name=mRNA_H-akashiwo_Contig966.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3893bp|location=Sequence derived from alignment at H-akashiwo_Contig966:135963..139855- (Heterosigma akashiwo CCMP452)
GGGGAAGGCCCGCGTGCACCGCGCGCTGGAAGAGATCCGGGCCCACGGGG
CGCCCCGGCCCCCGGAGCTGCAGTACGGGTGAGCGGGGTGCGGGCCCCCG
GGAAAGGCGGCCCGCCCCCTGTGGGGGGGCAAGGAGGGGCGACGGCGGGG
GCGGGGGTCGCGGCCAGAGGGGCAAAGCGAAGGAGTAGATCTGTTATGGG
CTGTGACTGTCAGCAGGGTTATGGGCGAAATGCGTTTAGCCTATAGCAGG
GCTGCTGCCAGCAGGGCCAAGGATACTGCTGTGGCGCGTGGCCCAAAACA
CCTTATCGTTAAACCGTTCAAGCTCGAACGAGAAGATCGCTGTTCGCAAG
CGGCCGTCCTCGTCTTTAAAATGCGATTTTGGTGCGTCTGGTGGATTGTG
GTGAGGAATGTGCTCTGGGGATCTCCACTATCACCAGCATAGTACCATTT
TATCAGCCATAGATTCCAGAAAGTGATCAAATTTGGGGCCAAAAACAGTC
TCTTAGATTTTCCTATCCAGAAATCGGACCTAACTTTCTTTGAGCTATAC
CCTTGGACACTGTAGAAGCAAGAGAGGAGGGTCTGACAAGTTGGAACAGT
GGAGATATTCAGGTTTCTGTGTACATCCTCTATCAACTGTAGAGCCAAGA
AAGTGGGCTGATAAGTTGAGAGAATGGAGGTAGTCAGATTCTGAGAAGCC
TATAATATATCTCCCTTTTCTTGGCCGTTGTTGCACTGGTAGGACTTGGA
ACAACTCAAACAACACCGTGGGAAAACAAATTATTTTTCTAAGTCCCAAA
TGTGGGATCTGAAATCCCATCAGGGTGAGAACGACAAATCCCACCGGGGG
ATTTGTTGACCTCACCGCCGGTGGGACCAAAATTGCTGGCTGGAGAGGAC
TTTTCTAAGTATAACCCACCATACCAGGGGGTCCTCCTCGATCCAGGCGA
GCTATAGCCACCTCAGTAAAAGCTGCATTTTTTGTTGTCATTTCCTCAGA
AGATCATCACTAAAAAAAAAAAAAAAAAAAAGGCAACGAAGAAGTTAGCT
GTGTTGGTCAGACCAAAAATCTCTAGCCACTAGTGTGAAGGAAAGTAAGT
AATTAGTGGAGGCAACCAAGACTTCCTTGTGTGTTGACAGAAAAAGGGAA
AAAGTGACACTGGCTTGCCTGGTCATTGCTTGGATGCTGGCTTTTCACAT
CGGTTTGACTTTGATCATGCTTAGGTGCTGTGCAGAGGCCCACTGAGACA
AGAGGCTGAAGAAGGAGGCCATGTATATATATATATATATAATATATATA
TATATATATATATATATTATTGCTGTGGTAGACAACACTTGCAATATTCA
TAAGGGCAGAGATTTGAACCCCCATTTGGCTCCCTCTGCCACGGCACTTT
TCACAGACATTTTTTTTTTTTTCGGCCCAGGGACAAAGACTATACGTGGT
GTGGGTGTCAACACGAAATTTCTGCAAGTATAATATTGCTACCGAGAGTC
CTTTGGCACGATCATCCAACATGTGAGCGATCATCCTGATGGCACCAAGC
CTCTTCCGAGCCTCCTTGGCTACTGCCTTGGCATGCAGGGATCATTTACC
TCGTGGGTCAATGGTGAAACCCAGCGCCTCCAGCTTCTCCTTCTTTTCAG
CAACCACTCCCCCATGGATAGTAGAGGAGGGTGAGCCACCTTGTTATCTG
CAACCAAGTTGGTGATTATCAGCTCCTGGGATTTGGTAGGTTCAAACTCT
AGTAGCCGCTCCTTGCCAAACTCATAAAGAAGCGCTGCAGATCATTGTTC
AGCTCCTCTGCTGCCCTCTGAGCCGCCCCCTCTGAAGGGTGAGGTCATCG
GTGTAGAAAAGGCATAGAGCTTTCCTGACTCGCTGTGGGACGTTGCGAAT
GAAGAAGTCAAAAAGGAGAGGCGACCAGATGGCCCCCTGCGGCACCCCAG
ACTTGATGCTCATATGACCGGAGCTGTCACCGTTTGCCACTACAAAGAGG
GTCCGGTCTGACAGGTAGCTCTGCATCAGCTTGAAGGCCTTTAGGAGCGC
ACACCCACTGCCCACAGATATCAAGCAGGCCCCACCACCACACCTTAACA
AAGGCACCCCCCTTGAAAATGAGCGCCACCAACCGCATATATATCATTCC
TGGCTTCAAGGGCCAAAAGGGGATTTTGTCGGCGCGGATAATGCTGACAT
CCACGGTCCCCGAAACCAAACTGGCTGGGCGAGATGTAATGAATCCAAAC
CCACTCTAGCATTTCATTACAAAAGTACAAAACAGGTTGAACACTTCACA
CACATTGCAGCTCAGTGCTAAATTTGCAGGATGATGGGGAAGAACCAAAA
TCATTTTAAAAAAAGCCTTCGTAATAAAACATCCGTGCGATCATGATGCA
ATAAATTCATGTGGACGAAACAACAAATAAAACAAAGGAGCATTATCACT
GTCTGTTAAAGGTTACAAAACTTTGGGTTTCCCCTTCATCAAGTACATCA
CAACAACGCAATCTCAGAAAAACTCTCATCTCCAAAGAAATGAAAAATAG
GACTTGCCAAGGTACAACCACATCACGGCCTTTCCCCTGGCGAGAAAATA
AAATATAAATGGAAGGAAGAATTCAAGCAGAATACATGAGGACGCAGAAT
TTCAACGAATCAAAAACTTAGAGGGATAAAAATCACCAATCAGAAAATAG
CAATTGCCATATATATAGTGCAGAAAACCATAGTCACGAATGAAGAAAAA
ACAAGAAAGAGAAAGGACAATGGCACCCCCTTTCCTTAGGCGTGGGATGT
TGAAGTAACCTATCCTCTCAAGATGATGCCCTACACGGCTTTTGTAAGAT
CAATAGTCAAGTACAGCAACCTCATCTATTGGGGGGCGGCCGAGGGTTAT
CTCGAAAAGCTTGACAGGGTTCAAAGCAGTGCTGTCTCGATACTGGAGGA
CTCGTCCGCCTTCTTCTTCCCCTCACTTGAAAGTAGGAGGCAGGCGGCAG
TTGGCCTCACCTGCAAGCTGCTTGATGGCCAAGGGCGGGGGGCGCTGAGT
GAAGTGCAGACAGTTTTTGCCCCTCCTGACATTTAAGTTCACAAGATCCT
CCGTCAGACTAGCAGCACAGCGGACGGCTTGGCCACAGCACCCTCATCAT
CAACTGAAGGCTGCCGCAATCCGCCAAAAAGGGAACATACACCCACTAAT
GACATATATATAGAAGGAGCTGCAGAGCAAGAATCTTAGAGATCTGGAAC
AGCCTTGAGCATTAACTCTCCAACAGCAGCACTTAAAGGGTTTCATCCCA
CTCAGAAAGCAGCTTCAACTTCATTTTGTCTCCCAGGCACATCAGAAGTC
TTAGGCAAAAGAAGAAAAAAAGAAAAAGGAAGAAAGAATAGAGTAAGAAA
GATGCAAATGACATGAGCAGAGGTAGTATTAGCCTAGCTGAACTAGTTTC
CCCACTTTCTACTCACACGCATACAATGTGTGTGAAATTTTATCCAAAGA
ACCTCATTCCTGCTGTTGCATACTCATCAGGTGGTACTATCCCAATATGC
TGTTTGTACTGCTGATCGTTTTGGTGAGCCCCCTACTACTACACATTGAT
ATATTTACCGTGCTGTGATATTCTGATCCTGTAAACATCCAGAAATGGAG
AGGACGGGTGTTTGTTGACATGCATGTGATGGCAATGGTATGAATTAATT
ATTCACTGCATGCCAAAATGTCTGGAGCCATAGAGCCATCATTTGCTAGA
CTTTCAAAAACTCATGGTGGTACATTACCTATGGTGTATATGGTGGTGCC
ATAATTTATTTTCTGTGCATCAAGCTAGCATTGGCACCACCAGTAACCCC
CGGACGCTTCCCTAGGTCTACGCCCTGATCTCCCCGCTGGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig966:135963..139855-

>mRNA_H-akashiwo_Contig966.5.1 ID=mRNA_H-akashiwo_Contig966.5.1|Name=mRNA_H-akashiwo_Contig966.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig966:135963..139855- (Heterosigma akashiwo CCMP452)
GGGGAAGGCCCGCGTGCACCGCGCGCTGGAAGAGATCCGGGCCCACGGGG
CGCCCCGGCCCCCGGAGCTGCAGTACGGGTGGTACTATCCCAATATGCTG
TTTGTACTGCTGATCGTTTTGGTCTACGCCCTGATCTCCCCGCTGGT
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