mRNA_H-akashiwo_Contig965.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig965.2.1
Unique NamemRNA_H-akashiwo_Contig965.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig965.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig965contigH-akashiwo_Contig965:187901..188181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_72314
Model size169
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000129
EggNOG OGs2CM82@1|root,2QPK2@2759|Eukaryota
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.6026344-CDS-H-akashiwo_Contig965:187901..1879771681388060.6026344-CDS-H-akashiwo_Contig965:187901..187977Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig965 187902..187977 -
1681388060.6141279-CDS-H-akashiwo_Contig965:188089..1881811681388060.6141279-CDS-H-akashiwo_Contig965:188089..188181Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig965 188090..188181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig965.2.1prot_H-akashiwo_Contig965.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig965 187902..188181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig965.2.1

>prot_H-akashiwo_Contig965.2.1 ID=prot_H-akashiwo_Contig965.2.1|Name=mRNA_H-akashiwo_Contig965.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
LQPKPPRYPFVHTDFEITIFLVDAEDQLKCGEHFELDVSLRLAPETGKSR
DMFQRQ
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mRNA from alignment at H-akashiwo_Contig965:187901..188181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig965.2.1 ID=mRNA_H-akashiwo_Contig965.2.1|Name=mRNA_H-akashiwo_Contig965.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=281bp|location=Sequence derived from alignment at H-akashiwo_Contig965:187901..188181- (Heterosigma akashiwo CCMP452)
TTGCAGCCAAAGCCCCCCAGATACCCATTCGTGCATACTGATTTTGAGAT
AACAATATTTCTGGTTGATGCCGAAGACCAACTGAAATGCGGGTGAGCAG
GGCAGTATGATGTCCATTTTTTGTGCCCTTCGTGGTACGCCTGTACTCCA
CCAATTAAATGTACGGTAAAAATAAGTGATAGTTTGGCTGTACAATGACC
ACAGGGAACATTTTGAGCTTGATGTCTCCTTAAGGCTCGCTCCCGAGACT
GGCAAAAGCAGAGATATGTTTCAAAGACAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig965:187901..188181-

>mRNA_H-akashiwo_Contig965.2.1 ID=mRNA_H-akashiwo_Contig965.2.1|Name=mRNA_H-akashiwo_Contig965.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig965:187901..188181- (Heterosigma akashiwo CCMP452)
TTGCAGCCAAAGCCCCCCAGATACCCATTCGTGCATACTGATTTTGAGAT
AACAATATTTCTGGTTGATGCCGAAGACCAACTGAAATGCGGGGAACATT
TTGAGCTTGATGTCTCCTTAAGGCTCGCTCCCGAGACTGGCAAAAGCAGA
GATATGTTTCAAAGACAA
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