mRNA_H-akashiwo_Contig964.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig964.6.1
Unique NamemRNA_H-akashiwo_Contig964.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 244 bits (623), Expect = 1.890e-79
Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = 1
Query:    1 ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPTPGFKAELSEAYRYRSMVGTLTWVANWTRPELAFTV 423
            ESCLY+ RDG GNELMVAVYVDD VISGSS  +V +FKQSLASKY+LTDQGELTQILGIKVVRDKRN+CF+L Q SFIKDAL+KFGLDYL ACKTPIDHTVDLTPTPGFKAELS+A  YRSMVGTL WVANWTRPELAFTV
Sbjct:  104 ESCLYIHRDG-GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTV 243          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 243 bits (619), Expect = 1.080e-77
Identity = 120/141 (85.11%), Postives = 128/141 (90.78%), Query Frame = 1
Query:    1 ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPTPGFKAELSEAYRYRSMVGTLTWVANWTRPELAFTV 423
            ESCLY+ RDG GNELMVAVYVDD VISGSS  +V +FKQSLASKY LTDQGELTQILGIKVVRDKRN+CF+L Q SFIKDAL+KFGLDYL ACKTP+DHTVDLTPTPGFKAELS+A  YRSMVGTL WVANWTRPELAFTV
Sbjct:   18 ESCLYIHRDG-GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTV 157          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 142 bits (358), Expect = 4.820e-38
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 ESCLYVRRDGA-GNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPTPGFKAELSEA 348
            ESCLY R++   G + MVAVYVDD V+S +   +V   K S  S++ +TD G LT ILGIKV RD  N+CFYL QASF++DA+SKFGLDYL AC+TP+ +  DLTPTPGFKA L +A
Sbjct:  292 ESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDA 408          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 101 bits (252), Expect = 2.680e-22
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPTPGFKAELS--EAYRYRSMVGTLTWVANWTRPELAFTV 423
            +SC+Y +    G + +++VYVDD V++ S    +   K++++  Y+++D GE+  ILGIKV RD+  R   L Q SFI++A  KF +        P++  +D+         LS  EA ++RS+VGT+ W+A WT PE+A+++
Sbjct:  662 DSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSI 804          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 92.4 bits (228), Expect = 3.010e-19
Identity = 52/142 (36.62%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   10 LYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPT--PGFKAELSEAYR--YRSMVGTLTWVANWTRPELAFTV 423
            ++ +RDG  + +++A++VDD +I+GSS+ L+ ++K+ LA+KY LTD G ++ +LGIKV RD       L Q ++I+  +++F  D L    TP+D T  L+ +  P   A+++   R  Y+  +G+L + A  TRP++AF V
Sbjct:  107 VFFKRDGT-HLVILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAV 247          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A177UTI3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UTI3_9BASI)

HSP 1 Score: 92.8 bits (229), Expect = 3.390e-19
Identity = 55/142 (38.73%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPI-DHTVDLTPTPGFKAELSEAYRYRSMVGTLTWVANWTRPELAFTV 423
            E CL+VR  GAG  +++AVYVDD VI+      V   K   AS Y +TD G L+ ILG++V  D R R   L Q ++I   + K+ ++   A  TP+ D +  L P    +A  SE + + +++G L W+A  TRP++AF V
Sbjct:  806 EPCLFVRF-GAGGSVILAVYVDDIVIAARGQEGVAKVKAEFASWYKITDNGGLSHILGMRVDHDPRTRTAKLGQTAYIDFLVRKYKMESETALPTPMTDASRQLGPNLSGQASKSEVHDFAALIGCLLWLAQGTRPDIAFPV 946          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY)

HSP 1 Score: 91.7 bits (226), Expect = 8.520e-19
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    1 ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPI--DHTVDLTPTPGFKAELSE------AYRYRSMVGTLTWVANWTRPELAFTV 423
            + CLYV ++     LMV VYVDD  ++G    LV  FK  LA ++D+TD G+LT ILG++V+R+++NR  ++ Q ++I+  L +FG+   +   TP+   H +    +P    E           +Y  +VG + + A  TRP++   V
Sbjct:  742 DECLYVLKEDGHIVLMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDLTFILGVQVIRNRQNRTIHMNQTTYIRGFLDRFGMKESMPVHTPLVPKHNLSAMQSPSTPEEQKNYLLYAGELKYLEVVGAVLY-ATQTRPDIQHAV 889          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 2.220e-18
Identity = 48/135 (35.56%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   31 AGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPT--PGFKAELSEAYR--YRSMVGTLTWVANWTRPELAFTV 423
            A N  ++A++VDD  I+GSS+ L+ ++K+ +  KY LTD GE++ +LGIKV RD+  R   L Q ++I   L++F    L     P+D  + LT +  P   A+++   +  YR  +G+L + A  TRP+++F +
Sbjct:  135 ANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAI 269          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A1K0FVN7_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ustilago bromivora TaxID=307758 RepID=A0A1K0FVN7_9BASI)

HSP 1 Score: 89.4 bits (220), Expect = 2.230e-18
Identity = 48/140 (34.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   10 LYVRRDGAGNEL-MVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVD-LTPTPGFKAELSEAYRYRSMVGTLTWVANWTRPELAFTV 423
            +Y R  G+ N + ++AVYVDD ++ G++++ V   +Q L+S + +TDQ +++ I+ + V  D+      + Q+ +IK  L+KFG+D   A  TP   T++ L    G  A   E + Y S+VG+L W+   +RP++ FTV
Sbjct:    1 MYTR--GSSNVMVLLAVYVDDLLVIGATALQVKSVRQQLSSAFSITDQDDISHIIRLNVHYDREACMLLINQSGYIKGILTKFGMDEAWAASTPATKTINTLGLREGDTASDEEVHHYASLVGSLLWITQGSRPDITFTV 138          
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 3.010e-18
Identity = 48/135 (35.56%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   31 AGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQGELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHTVDLTPT--PGFKAELSEAYR--YRSMVGTLTWVANWTRPELAFTV 423
            A N  ++A++VDD  I+GSS+ L+ ++K+ +  KY LTD GE++ +LGIKV RD+  R   L Q ++I   L++F    L     P+D  + LT +  P   A+++   +  YR  +G+L + A  TRP+++F +
Sbjct: 1152 ANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAI 1286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig964.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK1.890e-7985.82Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD78_HETAK1.080e-7785.11Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK4.820e-3858.97Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.680e-2235.66Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1M2VSW8_TRAPU3.010e-1936.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A177UTI3_9BASI3.390e-1938.73Integrase catalytic domain-containing protein n=2 ... [more]
A0A2R6NJS8_9APHY8.520e-1933.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4K468_9APHY2.220e-1835.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1K0FVN7_9BASI2.230e-1834.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6PCF8_9APHY3.010e-1835.56Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig964contigH-akashiwo_Contig964:243389..243811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog120017.I2FYK6
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size423
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.81e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size423
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.5696404-CDS-H-akashiwo_Contig964:243388..2438111681388060.5696404-CDS-H-akashiwo_Contig964:243388..243811Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig964 243389..243811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig964.6.1prot_H-akashiwo_Contig964.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig964 243389..243811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig964.6.1

>prot_H-akashiwo_Contig964.6.1 ID=prot_H-akashiwo_Contig964.6.1|Name=mRNA_H-akashiwo_Contig964.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
ESCLYVRRDGAGNELMVAVYVDDRVISGSSSVLVLDFKQSLASKYDLTDQ
GELTQILGIKVVRDKRNRCFYLCQASFIKDALSKFGLDYLLACKTPIDHT
VDLTPTPGFKAELSEAYRYRSMVGTLTWVANWTRPELAFTV
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mRNA from alignment at H-akashiwo_Contig964:243389..243811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig964.6.1 ID=mRNA_H-akashiwo_Contig964.6.1|Name=mRNA_H-akashiwo_Contig964.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig964:243389..243811+ (Heterosigma akashiwo CCMP452)
GAGTCGTGCTTGTACGTCCGCCGTGATGGGGCAGGCAACGAGCTTATGGT GGCGGTATATGTGGATGATCGTGTTATTAGTGGCAGCTCCTCTGTCCTTG TCTTGGATTTCAAGCAGTCTCTTGCCTCAAAGTACGATCTCACTGATCAG GGGGAGCTGACTCAAATTCTGGGTATCAAGGTTGTTCGTGACAAGCGCAA CAGATGCTTCTATCTTTGTCAAGCTTCTTTTATTAAGGATGCTCTCTCCA AGTTCGGGCTTGACTATCTGCTTGCCTGCAAAACTCCTATTGATCACACC GTTGACCTCACCCCTACCCCTGGTTTCAAGGCTGAGCTCTCCGAGGCTTA CCGATACAGGTCTATGGTTGGTACCCTGACCTGGGTTGCGAACTGGACCA GGCCGGAGCTAGCTTTTACGGTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig964:243389..243811+

>mRNA_H-akashiwo_Contig964.6.1 ID=mRNA_H-akashiwo_Contig964.6.1|Name=mRNA_H-akashiwo_Contig964.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig964:243389..243811+ (Heterosigma akashiwo CCMP452)
GAGTCGTGCTTGTACGTCCGCCGTGATGGGGCAGGCAACGAGCTTATGGT
GGCGGTATATGTGGATGATCGTGTTATTAGTGGCAGCTCCTCTGTCCTTG
TCTTGGATTTCAAGCAGTCTCTTGCCTCAAAGTACGATCTCACTGATCAG
GGGGAGCTGACTCAAATTCTGGGTATCAAGGTTGTTCGTGACAAGCGCAA
CAGATGCTTCTATCTTTGTCAAGCTTCTTTTATTAAGGATGCTCTCTCCA
AGTTCGGGCTTGACTATCTGCTTGCCTGCAAAACTCCTATTGATCACACC
GTTGACCTCACCCCTACCCCTGGTTTCAAGGCTGAGCTCTCCGAGGCTTA
CCGATACAGGTCTATGGTTGGTACCCTGACCTGGGTTGCGAACTGGACCA
GGCCGGAGCTAGCTTTTACGGTT
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