mRNA_H-akashiwo_Contig964.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig964.3.1
Unique NamemRNA_H-akashiwo_Contig964.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A6V1SSI1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SSI1_HETAK)

HSP 1 Score: 377 bits (969), Expect = 1.420e-130
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 2
Query:   29 MAGLTSETASPNKSQQKPSRPTKREPSTNHAVDSEPGSSSICRLLPATPLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK 628
            MAGLTSETASPNKSQQKPSRPTKREPSTNHAVDSEPGSSSICRLLPATPLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSS+NIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK
Sbjct:    1 MAGLTSETASPNKSQQKPSRPTKREPSTNHAVDSEPGSSSICRLLPATPLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSQNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK 200          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A7S3XU04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU04_HETAK)

HSP 1 Score: 193 bits (490), Expect = 7.800e-58
Identity = 103/174 (59.20%), Postives = 140/174 (80.46%), Query Frame = 2
Query:  113 NHAVDSEPGSSSICRLLPATPLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISK-GELLASFSA-SGDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK 628
            +H V++ PGS+++       P SA+++LRAKVLRQ+EYWLSDD LKKD+ IL+KM  GW+PIS IA+ K+++RLN S++FIADSLRSS+ ++IVS+DG QLRRRVPFSMEK LSAD RT+VV++LPDNIS+ G+L+  FS+ SG+++H+ IV+AK + PS RKG K P  V+ K
Sbjct:   28 HHQVNNTPGSATV------VPSSADENLRAKVLRQIEYWLSDDQLKKDDDILQKMLGGWIPISHIAKLKRIERLNLSIDFIADSLRSST-DLIVSEDGTQLRRRVPFSMEKVLSADFRTVVVKYLPDNISEVGQLMTGFSSRSGEVDHVKIVKAKTICPSYRKGQKTPFAVHMK 194          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A7S3XTY5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTY5_HETAK)

HSP 1 Score: 178 bits (451), Expect = 7.180e-52
Identity = 92/156 (58.97%), Postives = 123/156 (78.85%), Query Frame = 2
Query:  173 PLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISK-GELLASFSAS---GDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK 628
            P  A+D LRAKVLRQ+EYWLSDD LKKD+ ILKKM+ GW+PI  +A+ KQ++RLN S++FIADSLRSS+ +++VS+DG +++RRVPF    ++  D RT+VVR+LPDNIS+ G+L+ SFS S    ++EH+ IV+AK V PS RKG KPP PV+ K
Sbjct:   47 PSLADDSLRAKVLRQIEYWLSDDQLKKDDYILKKMRGGWIPIRHLAKLKQIQRLNLSIDFIADSLRSST-DLVVSEDGTEIQRRVPFERFSSMEKDFRTLVVRYLPDNISEEGQLMTSFSTSHNSSEVEHVKIVKAKTVCPSHRKGQKPPFPVHMK 201          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: D7TK39_VITVI (Uncharacterized protein n=5 Tax=Vitis TaxID=3603 RepID=D7TK39_VITVI)

HSP 1 Score: 89.0 bits (219), Expect = 1.970e-17
Identity = 51/138 (36.96%), Postives = 90/138 (65.22%), Query Frame = 2
Query:  170 TPLSAND-----DLRAKVLRQVEYWLSDDYLKKDE---TILKKMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHI 559
            T LSAND     D+R K+++QVEY+ SD+ L  D+    +LKK K+G++PI+ IA  ++MK+L   ++ I  +LR SS+ ++VS DG++++R  P S+ +   + + T+++ +LP++ S   +   F A+G+I+ I I
Sbjct:   27 THLSANDALLADDIRGKIIKQVEYYFSDENLPTDKYLMNLLKKDKNGFVPIAVIASFRKMKKLTQDIQLIVAALRESSQ-LVVSSDGKKVKRLHPLSLTEVKDSKICTVLIENLPEDHSTENIQRIFGAAGNIKKICI 163          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A6P6ABY5_DURZI (la-related protein 6C-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6ABY5_DURZI)

HSP 1 Score: 89.4 bits (220), Expect = 2.630e-17
Identity = 52/139 (37.41%), Postives = 88/139 (63.31%), Query Frame = 2
Query:  188 DDLRAKVLRQVEYWLSDDYLKKDETILKKMKS---GWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRK 595
            DDLR K+++QVEY  SD  L  +E++ K++     G++PIS I   K++K L  + + +A +LRSSS+ ++VSDDG+++RR+ PF+ ++      RT+VV +LP++ S   L   F+  G +++I I   ++  PS  K
Sbjct:  116 DDLRQKIIKQVEYQFSDMSLLSNESLSKQINKDPEGYVPISFITSTKKIKSLITNNQLLAQALRSSSK-LVVSDDGKKVRRKHPFTEKEREEVQSRTVVVENLPEDHSHQNLDKIFNVVGSVKNIRICHPQESNPSRSK 253          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A0J8B5P1_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B5P1_BETVV)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-16
Identity = 53/150 (35.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  119 AVDSEPGSSSICRLLPATPLSANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKS---GWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHI 559
            A+ S P S    RL   + +S++ DLRAK+++QVEY+ SD+ L  D+ ++K++K    G++ IS IA  ++MKRL      I DSL+ SS+ +++S DG++++R  P   ++    ++ T+VV +LP++ S   +   F  +G I++I I
Sbjct:   22 ALHSPPPSDDDARLSIESAVSSDVDLRAKIIKQVEYYFSDENLPDDKFLMKQVKKDKEGFVSISLIASFRKMKRLTKDSSLIIDSLKESSQ-LVISSDGKKVKRLHPLPSKEDKGPELCTVVVANLPEDHSVQNIQKIFGLAGSIKNISI 170          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A835RDY1_VANPL (HTH La-type RNA-binding domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RDY1_VANPL)

HSP 1 Score: 85.9 bits (211), Expect = 1.910e-16
Identity = 49/128 (38.28%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  185 NDDLRAKVLRQVEYWLSDDYLKKDETILKKM---KSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHI 559
            +DDLR K++RQVEY+ SD+ L  D+ +LK+M   K G++PI+ I+  ++MK+L      I  +LR+S+  ++VS DG+ ++R  P  + +   + +RTI+V +LP++ S+  +L  F A G+IE + I
Sbjct:   77 SDDLRDKIVRQVEYYFSDENLPNDKFLLKQMRKDKEGYVPIAIISSFRKMKKLAKDSSLIEAALRTST-ILVVSSDGKMVKRMHPLPISEPKDSKLRTILVENLPEDHSEENILRIFGAIGNIEEMTI 203          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A6A2XN62_HIBSY (La-related protein 6C n=6 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XN62_HIBSY)

HSP 1 Score: 87.0 bits (214), Expect = 1.940e-16
Identity = 51/139 (36.69%), Postives = 88/139 (63.31%), Query Frame = 2
Query:  188 DDLRAKVLRQVEYWLSDDYLKKDETILKKMKS---GWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRK 595
            DDLR K+++QVEY  SD  L  +E++ K++     G++P+S IA  K++K L  + + +A +LRSSS+ ++VSDDG+++RR+ PF+ ++      RT+VV +LP++ S   L   F+  G +++I I   ++   S  K
Sbjct:  139 DDLRQKIIKQVEYQFSDMSLIANESLSKQISKDPEGYVPVSFIASTKKIKSLITNHQLLAQALRSSSK-LVVSDDGKKIRRKHPFTEKEREQVQSRTVVVENLPEDHSHQNLDKIFNVVGSVKNIRICHPQESNSSRSK 276          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A6A3AX56_HIBSY (Pentatricopeptide repeat-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AX56_HIBSY)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-16
Identity = 59/166 (35.54%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  125 DSEPGSSSICRLLPATPLSA-------NDDLRAKVLRQVEYWLSDDYLKKDETILKKMK---SGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSR 592
            D EP +  IC    + P+ +       N+DLR ++++QVEY LSD  L  +E+  K++     G++PIS IA  K++K L A+ + +A  L  SS N++VSD+G+++RR+ PF+ ++      RT+VV +LPD+ S   L   F   G +++I I   ++ + SSR
Sbjct:   72 DQEPATYMICNRNLSIPMPSFSSRNVLNNDLRQEIIKQVEYLLSDMSLIANESFSKQISRDPEGFVPISFIASTKKIKSLIANQQLLAQILTFSS-NLVVSDNGKKVRRKHPFTEKEREEVQSRTVVVENLPDDHSHQNLDKIFDVVGSVKNIRICRPQE-FNSSR 235          
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Match: A0A6J1D5P1_MOMCH (la-related protein 6C n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D5P1_MOMCH)

HSP 1 Score: 86.7 bits (213), Expect = 2.430e-16
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  185 NDDLRAKVLRQVEYWLSDDYLKKDETILK---KMKSGWLPISQIAQPKQMKRLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVVRHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRKG 598
            +DD++ K+++QVEY  SD  L  +E++ K   K   G++PIS I+  K++K L+ +   I  +LRSSSR ++VS DG+++RR+ PF+ +       RT+VV +LPDN S   L   FS  G ++ I I    +  P   KG
Sbjct:  111 SDDIQQKIVKQVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSR-LVVSSDGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKG 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig964.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1SSI1_HETAK1.420e-13099.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XU04_HETAK7.800e-5859.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XTY5_HETAK7.180e-5258.97Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
D7TK39_VITVI1.970e-1736.96Uncharacterized protein n=5 Tax=Vitis TaxID=3603 R... [more]
A0A6P6ABY5_DURZI2.630e-1737.41la-related protein 6C-like n=1 Tax=Durio zibethinu... [more]
A0A0J8B5P1_BETVV1.330e-1635.33Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A835RDY1_VANPL1.910e-1638.28HTH La-type RNA-binding domain-containing protein ... [more]
A0A6A2XN62_HIBSY1.940e-1636.69La-related protein 6C n=6 Tax=Hibiscus syriacus Ta... [more]
A0A6A3AX56_HIBSY2.200e-1635.54Pentatricopeptide repeat-containing protein n=2 Ta... [more]
A0A6J1D5P1_MOMCH2.430e-1638.30la-related protein 6C n=1 Tax=Momordica charantia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig964contigH-akashiwo_Contig964:50545..51172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog29760.VIT_10s0003g03190.t01
PFAMsLa,RRM_1
Model size628
Max annot lvl35493|Streptophyta
KEGG koko:K15191
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-18
EggNOG OGsCOG5193@1|root,KOG1855@2759|Eukaryota,37MZ3@33090|Viridiplantae,3GD6V@35493|Streptophyta
DescriptionLa-related protein
Cds size600
COG categoryA
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.5176644-UTR-H-akashiwo_Contig964:50544..505721681388060.5176644-UTR-H-akashiwo_Contig964:50544..50572Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig964 50545..50572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.5295084-CDS-H-akashiwo_Contig964:50572..511721681388060.5295084-CDS-H-akashiwo_Contig964:50572..51172Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig964 50573..51172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig964.3.1prot_H-akashiwo_Contig964.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig964 50573..51172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig964.3.1

>prot_H-akashiwo_Contig964.3.1 ID=prot_H-akashiwo_Contig964.3.1|Name=mRNA_H-akashiwo_Contig964.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=200bp
MAGLTSETASPNKSQQKPSRPTKREPSTNHAVDSEPGSSSICRLLPATPL
SANDDLRAKVLRQVEYWLSDDYLKKDETILKKMKSGWLPISQIAQPKQMK
RLNASVEFIADSLRSSSRNIIVSDDGRQLRRRVPFSMEKALSADVRTIVV
RHLPDNISKGELLASFSASGDIEHIHIVEAKQVYPSSRKGAKPPVPVYRK
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mRNA from alignment at H-akashiwo_Contig964:50545..51172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig964.3.1 ID=mRNA_H-akashiwo_Contig964.3.1|Name=mRNA_H-akashiwo_Contig964.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=628bp|location=Sequence derived from alignment at H-akashiwo_Contig964:50545..51172+ (Heterosigma akashiwo CCMP452)
CAACAACACAAACCACTTTCCAAGAAGAATGGCAGGCCTTACCTCGGAAA CAGCGTCTCCAAACAAGTCTCAACAGAAGCCAAGTCGACCCACCAAACGG GAGCCTTCAACTAACCATGCCGTTGACTCTGAGCCTGGTTCTTCATCAAT CTGCCGTTTGCTTCCAGCCACCCCGCTTTCAGCCAATGATGATCTGCGTG CCAAAGTGTTGCGCCAGGTTGAGTACTGGCTCAGTGACGATTACTTGAAA AAGGACGAAACTATACTAAAAAAAATGAAGAGTGGTTGGTTACCCATCAG CCAAATTGCACAGCCAAAACAAATGAAGCGCTTGAACGCTTCTGTGGAAT TCATTGCAGATTCTCTTCGCTCTTCTTCGCGGAATATAATCGTCAGTGAT GATGGAAGGCAATTGCGAAGAAGGGTACCGTTCAGCATGGAGAAGGCATT AAGCGCAGATGTTCGAACCATTGTTGTCAGGCACCTCCCAGATAACATTT CCAAAGGTGAGCTCTTGGCAAGTTTCTCCGCCAGCGGTGACATTGAGCAC ATTCACATAGTGGAGGCCAAACAAGTTTACCCTTCTTCAAGAAAAGGTGC AAAGCCACCTGTCCCAGTTTACCGAAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig964:50545..51172+

>mRNA_H-akashiwo_Contig964.3.1 ID=mRNA_H-akashiwo_Contig964.3.1|Name=mRNA_H-akashiwo_Contig964.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=600bp|location=Sequence derived from alignment at H-akashiwo_Contig964:50545..51172+ (Heterosigma akashiwo CCMP452)
ATGGCAGGCCTTACCTCGGAAACAGCGTCTCCAAACAAGTCTCAACAGAA
GCCAAGTCGACCCACCAAACGGGAGCCTTCAACTAACCATGCCGTTGACT
CTGAGCCTGGTTCTTCATCAATCTGCCGTTTGCTTCCAGCCACCCCGCTT
TCAGCCAATGATGATCTGCGTGCCAAAGTGTTGCGCCAGGTTGAGTACTG
GCTCAGTGACGATTACTTGAAAAAGGACGAAACTATACTAAAAAAAATGA
AGAGTGGTTGGTTACCCATCAGCCAAATTGCACAGCCAAAACAAATGAAG
CGCTTGAACGCTTCTGTGGAATTCATTGCAGATTCTCTTCGCTCTTCTTC
GCGGAATATAATCGTCAGTGATGATGGAAGGCAATTGCGAAGAAGGGTAC
CGTTCAGCATGGAGAAGGCATTAAGCGCAGATGTTCGAACCATTGTTGTC
AGGCACCTCCCAGATAACATTTCCAAAGGTGAGCTCTTGGCAAGTTTCTC
CGCCAGCGGTGACATTGAGCACATTCACATAGTGGAGGCCAAACAAGTTT
ACCCTTCTTCAAGAAAAGGTGCAAAGCCACCTGTCCCAGTTTACCGAAAG
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