mRNA_H-akashiwo_Contig964.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig964.1.1
Unique NamemRNA_H-akashiwo_Contig964.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A7S4DE70_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE70_HETAK)

HSP 1 Score: 344 bits (882), Expect = 3.920e-117
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGHRA 552
            GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVE VRHLARAA EKFPQS YVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRE IPALLARRQFSEAEMELFELP R GGLGIL+PTKAAQSS+ELSFSATSMVREAILGDEPLDVPGHRA
Sbjct:    7 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVECVRHLARAA-EKFPQSAYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRA 189          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 344 bits (882), Expect = 4.900e-115
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGHRA 552
            GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVE VRHLARAA EKFPQS YVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRE IPALLARRQFSEAEMELFELP R GGLGIL+PTKAAQSS+ELSFSATSMVREAILGDEPLDVPGHRA
Sbjct:    7 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVECVRHLARAA-EKFPQSAYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRA 189          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A7S4DE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE02_HETAK)

HSP 1 Score: 265 bits (678), Expect = 8.860e-89
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGG 429
            GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVE VRHLARAA EKFPQS YVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRE IPALLARRQFSEAEMELF+LP R GG
Sbjct:    7 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVECVRHLARAA-EKFPQSAYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFKLPVRWGG 148          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 174 bits (442), Expect = 2.460e-47
Identity = 100/184 (54.35%), Postives = 126/184 (68.48%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGHRA 552
            G + EP+KS+LVVK     +A+E+FA+   + +VS  + LGGC+G    +  +VKKKVA WV+ V  LA AA  K P   Y +FT SLQSEW+FLQRLIPGSS  F EL+DVI R  IPAL+ RR  S+ E  LF LP R  GLGI  P+K AQ++++LS ++TSMVREAI     LDVPGHRA
Sbjct:  379 GIFAEPTKSLLVVKPEFVGQAQELFADL-QIPVVSSGKHLGGCVGDEGEMLDFVKKKVARWVKCVEFLAEAA-RKHPHEAYTSFTKSLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRA 559          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A6H5GR62_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GR62_9HEMI)

HSP 1 Score: 151 bits (381), Expect = 5.150e-39
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGH 546
            GY+PEP KS LVVK GKEE+ARE+F   PD+ +V+ HR+LGGCIG SA    +VK KV  WV+ V  +A  A+E  PQ+ +VAFT SLQ EW +LQR++ G    +  L   I+++L PA+L R    E E +LF LP R GGL I NP   + ++  +S  ATS +  +I     LD   H
Sbjct:  363 GYFPEPQKSYLVVKPGKEEQARELF---PDVRVVTSHRYLGGCIGPSAEQAQFVKSKVEKWVDNVSAMAEFASEN-PQATHVAFTKSLQREWAYLQRVVNGCEDEYEPLKTTIQQKLTPAILGRTVDPE-EHDLFSLPARLGGLQIENPVSTSVTASAISKEATSKLVTSITTGVQLDTVEH 539          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A0A9YW02_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YW02_LYGHE)

HSP 1 Score: 143 bits (361), Expect = 1.490e-38
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLD 534
            GYYPEPSKS LV+K+G EE +R +F +  +++IV  HRFLGG IG+ A  + YV++KV  WVE     A  AA+  PQ+V+ AFT SLQ EW F QR+I G S  +  L + I++ L+PA+  R + SE E  L  LP R GGLGI NP  +AQ+   +S  +  ++  +I+  +PL+
Sbjct:   53 GYYPEPSKSFLVIKDGLEEESRALFGDL-NVKIVYSHRFLGGVIGSPAQKKEYVREKVQKWVEHTEKFA-VAAQDSPQAVHAAFTKSLQFEWAFTQRVIEGCSNEYLPLWEAIRKRLMPAITGR-EVSETEGNLMSLPARLGGLGISNPIDSAQA-FRISQRSCELLSASIISGDPLN 226          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A0K8TGV6_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TGV6_LYGHE)

HSP 1 Score: 139 bits (350), Expect = 2.300e-38
Identity = 84/185 (45.41%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRH--LARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGHR 549
            GYYPEP+K  LV+K G E  A E+F +  +++IV  HRFLGG IG  A    YV+KKV T   RV H  +    A+K PQ+V+ AFT SLQ EW F QR++ G S  +  L DVI+R+L+PA++ R + S+ E E+  LP R GG+ I NPTKA   +   S  A  ++ EAI    PL    H+
Sbjct:    1 GYYPEPAKGFLVIKGGLEGEAAELFGDL-NVQIVYSHRFLGGIIGPEAQKPEYVRKKVET---RVAHTEMFSVTAKKSPQAVHAAFTKSLQFEWSFTQRVVDGCSQEYQPLWDVIRRQLMPAIIGR-EVSDLEAEVMSLPVRQGGMAIQNPTKA-DGTFRTSQRAAQVLIEAICSGSPLPYDEHQ 179          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A0A9VTQ4_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9VTQ4_LYGHE)

HSP 1 Score: 144 bits (364), Expect = 2.410e-38
Identity = 79/183 (43.17%), Postives = 115/183 (62.84%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGHR 549
            GY PEPSKS LV+K G E+RA E+F +  DL+IV  HRFLGG IG     ++YV+ KV  W+ + +  + AA E  PQ+ +  FT SLQS+W FLQR++ G+   FG L  VI REL+PA+  +   S +E +++ LP R GG+G++NPT   + ++  S  A+  +  +IL  + LD   H+
Sbjct:   92 GYLPEPSKSYLVIKPGYEQRATEIFHDL-DLKIVYTHRFLGGVIGTREEKKSYVQGKVQEWIVKTKKFSEAA-ESSPQATHATFTKSLQSQWSFLQRVVEGTGEDFGPLWRVISRELMPAIFGQ-DTSVSEADVWTLPARLGGMGMMNPTSDREGAYRGSQRASEKLITSILTGDSLDFRDHQ 271          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A146MAS3_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146MAS3_LYGHE)

HSP 1 Score: 142 bits (358), Expect = 3.820e-37
Identity = 80/182 (43.96%), Postives = 110/182 (60.44%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLDVPGH 546
            GYYPE SKS L++K G EE A  +F    +L +V   RFLGG IG  A    +VK +V  WVE ++ LA AA +K PQ+ YVAFT SL  EW FLQR++ G +  +  L D I+R  IPAL+     S  + ELFELP + GGL + +P + A  ++  S  +T ++ EA++  E LD+  H
Sbjct:  130 GYYPEASKSYLIIKPGLEEEAMALFGG-TNLRVVYSQRFLGGHIGDQASAAEFVKCRVQGWVENIKKLA-AATKKSPQAGYVAFTRSLSKEWVFLQRVVEGCTGEYDPLRDCIRRVFIPALMGE-DVSHLDAELFELPVKLGGLAVEDPVRTASLNYSASKRSTMILAEALVTGESLDLDLH 308          
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Match: A0A0K8TJ54_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TJ54_LYGHE)

HSP 1 Score: 143 bits (361), Expect = 1.810e-36
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 1
Query:    1 GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGVEAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIPGSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPTKAAQSSHELSFSATSMVREAILGDEPLD 534
            GYYPEPSKS LV+K+G EE +R +F +  +++IV  HRFLGG IG+ A  + YV++KV  WVE     A  AA+  PQ+V+ AFT SLQ EW F QR+I G S  +  L + I++ L+PA+  R + SE E  L  LP R GGLGI NP  +AQ+   +S  +  ++  +I+  +PL+
Sbjct:  228 GYYPEPSKSFLVIKDGLEEESRALFGDL-NVKIVYSHRFLGGVIGSPAQKKEYVREKVQKWVEHTEKFA-VAAQDSPQAVHAAFTKSLQFEWAFTQRVIEGCSNEYLPLWEAIRKRLMPAITGR-EVSETEGNLMSLPARLGGLGISNPIDSAQA-FRISQRSCELLSASIISGDPLN 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig964.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DE70_HETAK3.920e-11795.65Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8Q7_HETAK4.900e-11595.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DE02_HETAK8.860e-8995.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8R9_HETAK2.460e-4754.35Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6H5GR62_9HEMI5.150e-3946.70Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0A9YW02_LYGHE1.490e-3845.51Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8TGV6_LYGHE2.300e-3845.41Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0A9VTQ4_LYGHE2.410e-3843.17Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A146MAS3_LYGHE3.820e-3743.96Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8TJ54_LYGHE1.810e-3645.51Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig964contigH-akashiwo_Contig964:4833..5387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15715522
PFAMsRVT_1
Model size555
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.49e-34
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.4699292-CDS-H-akashiwo_Contig964:4832..53871681388060.4699292-CDS-H-akashiwo_Contig964:4832..5387Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig964 4833..5387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig964.1.1prot_H-akashiwo_Contig964.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig964 4833..5387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig964.1.1

>prot_H-akashiwo_Contig964.1.1 ID=prot_H-akashiwo_Contig964.1.1|Name=mRNA_H-akashiwo_Contig964.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=185bp
GYYPEPSKSVLVVKEGKEERAREVFAEYPDLEIVSHHRFLGGCIGASAGV
EAYVKKKVATWVERVRHLARAAAEKFPQSVYVAFTMSLQSEWKFLQRLIP
GSSAWFGELNDVIKRELIPALLARRQFSEAEMELFELPGRCGGLGILNPT
KAAQSSHELSFSATSMVREAILGDEPLDVPGHRA*
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mRNA from alignment at H-akashiwo_Contig964:4833..5387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig964.1.1 ID=mRNA_H-akashiwo_Contig964.1.1|Name=mRNA_H-akashiwo_Contig964.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=555bp|location=Sequence derived from alignment at H-akashiwo_Contig964:4833..5387+ (Heterosigma akashiwo CCMP452)
GGCTACTACCCTGAACCGTCCAAGAGTGTTTTGGTGGTGAAGGAGGGCAA GGAGGAAAGGGCCAGGGAGGTGTTCGCGGAGTACCCTGACCTTGAGATCG TCTCTCACCACAGGTTTTTGGGCGGCTGCATTGGCGCAAGTGCCGGGGTG GAGGCCTACGTGAAGAAGAAGGTAGCAACTTGGGTGGAGCGTGTGCGGCA CCTGGCGCGGGCGGCGGCGGAGAAGTTCCCTCAGTCTGTGTACGTTGCTT TCACCATGTCGCTGCAGAGTGAGTGGAAATTCCTTCAGCGACTGATCCCA GGATCCTCCGCTTGGTTCGGGGAGTTGAATGATGTGATCAAGCGCGAGTT AATCCCTGCGCTGCTTGCCAGGCGGCAGTTCTCTGAGGCTGAGATGGAGC TCTTCGAGCTGCCCGGCAGGTGTGGGGGGCTAGGCATTCTCAACCCAACT AAGGCCGCGCAGTCCTCCCATGAGCTGTCCTTTTCTGCCACCTCCATGGT GCGCGAAGCCATCCTGGGTGACGAGCCTCTGGATGTGCCTGGACACCGTG CCTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig964:4833..5387+

>mRNA_H-akashiwo_Contig964.1.1 ID=mRNA_H-akashiwo_Contig964.1.1|Name=mRNA_H-akashiwo_Contig964.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=555bp|location=Sequence derived from alignment at H-akashiwo_Contig964:4833..5387+ (Heterosigma akashiwo CCMP452)
GGCTACTACCCTGAACCGTCCAAGAGTGTTTTGGTGGTGAAGGAGGGCAA
GGAGGAAAGGGCCAGGGAGGTGTTCGCGGAGTACCCTGACCTTGAGATCG
TCTCTCACCACAGGTTTTTGGGCGGCTGCATTGGCGCAAGTGCCGGGGTG
GAGGCCTACGTGAAGAAGAAGGTAGCAACTTGGGTGGAGCGTGTGCGGCA
CCTGGCGCGGGCGGCGGCGGAGAAGTTCCCTCAGTCTGTGTACGTTGCTT
TCACCATGTCGCTGCAGAGTGAGTGGAAATTCCTTCAGCGACTGATCCCA
GGATCCTCCGCTTGGTTCGGGGAGTTGAATGATGTGATCAAGCGCGAGTT
AATCCCTGCGCTGCTTGCCAGGCGGCAGTTCTCTGAGGCTGAGATGGAGC
TCTTCGAGCTGCCCGGCAGGTGTGGGGGGCTAGGCATTCTCAACCCAACT
AAGGCCGCGCAGTCCTCCCATGAGCTGTCCTTTTCTGCCACCTCCATGGT
GCGCGAAGCCATCCTGGGTGACGAGCCTCTGGATGTGCCTGGACACCGTG
CCTAG
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