mRNA_H-akashiwo_Contig962.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig962.1.1
Unique NamemRNA_H-akashiwo_Contig962.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A7S3UM69_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM69_HETAK)

HSP 1 Score: 320 bits (820), Expect = 9.590e-107
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 3
Query:  777 YLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIHSRQYRPLIDVCHLGSCSTAPPG 1226
            YLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYCVPLGGGGGSGPR FQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIHSRQYRPLIDVCHLGSCSTAPPG
Sbjct:    1 YLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYCVPLGGGGGSGPRVFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIHSRQYRPLIDVCHLGSCSTAPPG 150          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: UPI0019053F2F (uncharacterized protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019053F2F)

HSP 1 Score: 88.2 bits (217), Expect = 5.920e-15
Identity = 72/233 (30.90%), Postives = 99/233 (42.49%), Query Frame = 3
Query:  462 PQG-APSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDEILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRD 1154
            PQG AP+ RY      CGT+ F++GG     G+F DDLW FD                      +++ +  + N S R A          P  R  H MVT+ +K+YLFGG+  G  +YND W          C D     W  +   G +P  R GHAAA+ D V+Y+ GG  V     G      +     S  R +    +  G   P+ R GHAM +   ++ V GG  
Sbjct:  250 PQGTAPTGRYGHAVTMCGTKFFVYGGQVD--GEFLDDLWAFD-------------------LGSLKRGQPLWENLSVRGAHA--------PARRTGHIMVTYGDKLYLFGGT-DGQYHYNDTW----------CYDTLTGTWADLTCIGFIPLPREGHAAALVDDVMYVFGGRGVDGTDLGDLAAFKI-----SNQRWYMFQNMGPG---PSGRSGHAMASAGPRVFVLGGES 434          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: L0PDW2_PNEJ8 (Uncharacterized protein n=1 Tax=Pneumocystis jirovecii (strain SE8) TaxID=1209962 RepID=L0PDW2_PNEJ8)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-14
Identity = 67/251 (26.69%), Postives = 110/251 (43.82%), Query Frame = 3
Query:  474 PSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDE---ILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEG-SQEPAPRIGHAMVALARKLLVYGGRDIHSR----QYRPLIDVCHL 1199
            PS RY  T    GT++ +FGG T     FF+DL  F+    + +K+S  +    +  +  A  EQ                   + + P  R  H M+T++EK+YLFGG+  G   +ND+WV           D K + W+ V   G +P+ R GH+A++ D ++YI GG  +     G      +            K  + +     P+PR GH + +  +K++V GG    ++        ++D C L
Sbjct:  141 PSGRYGHTLNIIGTKIIIFGGQTETF--FFNDLVSFNLDTCMFKKYSNDRNLISVVNTPSAKWEQ----------------ITPITSLPPARTNHIMITYQEKLYLFGGTN-GSQWFNDVWVF----------DYKNLSWKEVVCNGCIPQPREGHSASLVDDIIYIFGGRGLDGSDLGDLIAFKI---------TTSKWYIFQNMGPSPSPRSGHTLTSFGQKIIVLGGEGSLNKTEDLSIIYILDTCKL 353          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A0W4ZPS4_PNEC8 (Uncharacterized protein n=1 Tax=Pneumocystis carinii (strain B80) TaxID=1408658 RepID=A0A0W4ZPS4_PNEC8)

HSP 1 Score: 87.0 bits (214), Expect = 1.400e-14
Identity = 72/265 (27.17%), Postives = 108/265 (40.75%), Query Frame = 3
Query:  474 PSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFD-----EILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIHSR---------------QYRPLIDVCHLGS 1205
            P  RY  T    GT++ +FGG       FF+D++ FD      +  KW        I P                           V   P  R  H M+T++EK+YLFGG+  G   +ND+WV           D K + W+ +   G +P+ R GH+AA+ D ++YI GG  +     G      +     S    FQ +        P+PR GH + +  +K++V GG D  +R               +Y P I + +LGS
Sbjct:  159 PPGRYGHTLNVLGTKIIIFGGQMETC--FFNDMFSFDLDSLNSLNAKWEL------ITP---------------------------VTNLPSARTNHIMITYQEKLYLFGGTN-GNEWFNDVWVF----------DYKNLSWKEIACNGCIPQPREGHSAALVDDIIYIFGGRGLDGSDLGDLIAFKIST---SRWYIFQNM-----GPSPSPRSGHVLTSFGQKIIVLGGEDSLNRIEDSSISYILDTSKIRYPPEISIPNLGS 369          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A0W4ZSK1_PNEJ7 (Uncharacterized protein n=1 Tax=Pneumocystis jirovecii (strain RU7) TaxID=1408657 RepID=A0A0W4ZSK1_PNEJ7)

HSP 1 Score: 85.1 bits (209), Expect = 5.970e-14
Identity = 64/230 (27.83%), Postives = 103/230 (44.78%), Query Frame = 3
Query:  474 PSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDE---ILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEG-SQEPAPRIGHAMVALARKLLVYGG 1148
            PS RY  T    GT++ +FGG T     FF+DL  F+    + +K+S  +    +  +  A  EQ                   + + P  R  H M+T++EK+YLFGG+  G   +ND+WV           D K + W+ V   G +P+ R GH+A++ D ++YI GG  +     G      +            K  + +     P+PR GH + +  +K++V GG
Sbjct:  145 PSGRYGHTLNIIGTKIIIFGGQTETF--FFNDLVSFNLDTCMFKKYSNDRNLISVVNTPSAKWEQ----------------ITPITSLPPARTNHIMITYQEKLYLFGGTN-GSQWFNDVWVF----------DYKNLSWKEVVCNGCIPQPREGHSASLVDDIIYIFGGRGLDGSDLGDLIAFKI---------TTSKWYIFQNMGPSPSPRSGHTLTSFGQKIIVLGG 336          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: S8EL50_FOMPI (Uncharacterized protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8EL50_FOMPI)

HSP 1 Score: 84.7 bits (208), Expect = 7.970e-14
Identity = 70/229 (30.57%), Postives = 96/229 (41.92%), Query Frame = 3
Query:  471 APSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDEILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPR--AFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGG 1148
            AP  RY       G++ ++FGG     G+F +DLW FD  L        +  + P+E +                          RP  R  H  VTFE K++LFGG+     +YND WV           D    +W  +   G +P  R GHAAA+ D V+Y+ GG  V  +  G      LG    S  R   FQK+        P PR GHAM ++  ++ V GG
Sbjct:  200 APVGRYGHAVTMVGSKFYMFGGQVD--GEFLNDLWAFD--LNSLRTKAAWELVEPAEGS-------------------------PRPAQRTGHVCVTFENKIFLFGGT-DCQYHYNDTWVF----------DTTTNMWSELTCIGFIPSPREGHAAALVDDVVYVFGGRGVDGKDLG-----DLGAFKISNQRWYMFQKM-----GPAPTPRSGHAMASMGSRVFVLGG 378          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A3N2PLU4_9PEZI (Kelch repeat-containing protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PLU4_9PEZI)

HSP 1 Score: 84.7 bits (208), Expect = 8.070e-14
Identity = 71/235 (30.21%), Postives = 101/235 (42.98%), Query Frame = 3
Query:  462 PQGAPSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDEILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEG------SQEPAPRIGHAMVALARKLLVYGG 1148
            P   PS RY  T    G+++F+FGG     G F +DL  FD  L K       +E+      L+E  E      ++R            P  R  HS++TF EKMYLFGG+  G   +ND+W          C D  P  W  ++  G +P  R GH AA+ D V+Y+ GG  +              G   G  A  +I              P+PR GH+M  + ++++V GG
Sbjct:  226 PGPRPSGRYGHTLNILGSKIFIFGG--QVEGYFMNDLAAFD--LNKLQLPNNRWEM------LIENTES-----TDRV-----------PPARTNHSVITFNEKMYLFGGTN-GFQWFNDVW----------CYDPIPNEWTQLDCIGYIPVPREGHTAALVDDVMYVFGGRTEE-------------GADLGDLAAFRITSRRWYTFQNMGPSPSPRSGHSMTTVGKQIVVVGG 410          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A0W4ZX36_PNEMU (Uncharacterized protein n=1 Tax=Pneumocystis murina (strain B123) TaxID=1069680 RepID=A0A0W4ZX36_PNEMU)

HSP 1 Score: 82.8 bits (203), Expect = 3.280e-13
Identity = 71/265 (26.79%), Postives = 107/265 (40.38%), Query Frame = 3
Query:  474 PSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFD-----EILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGR---------------DIHSRQYRPLIDVCHLGS 1205
            P  RY  T    GT++ +FGG       FF+D++ FD      +  KW        I P                           V + P  R  H M+T++EK+YLFGG+  G   +ND+WV           D K + W+ +   G +P+ R GH+AA+ D ++YI GG  +     G      +     S    FQ +        P+PR GH + +  +K++V GG                D    +Y P I + +LGS
Sbjct:  126 PPGRYGHTLNILGTKIVIFGGQMEI--YFFNDMFLFDLDTLNTLNAKWEL------ITP---------------------------VTSLPPARTNHIMITYQEKLYLFGGTN-GTQWFNDVWVF----------DYKNLSWKEIACNGCIPQPREGHSAALVDDIIYIFGGRGLDGSDLGDLIAFKIST---SRWYIFQNM-----GPSPSPRSGHVLTSFGQKIIVLGGEGSLSKVEDSSITYILDTSKIRYPPEISIPNLGS 336          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A165UL50_9APHY (Uncharacterized protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165UL50_9APHY)

HSP 1 Score: 82.8 bits (203), Expect = 3.350e-13
Identity = 72/231 (31.17%), Postives = 99/231 (42.86%), Query Frame = 3
Query:  474 PSP--RYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDEILQKWSCCKTFYE-IRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGN-VQNQTFGCTYCVPLGGGGGSGPR--AFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGG 1148
            PSP  RY       G++ ++FGG     G+F +DLW FD    +    K  +E + P+E +                          RP  R  H  VTFE K++LFGG+     +YND WV           D    +W  +   G +P  R GHAAA+ D V+YI GG  V  +  G      LG    S  R   FQK+        P PR GH+M ++  ++ V GG
Sbjct:  191 PSPVGRYGHAVTMVGSKFYMFGGQVD--GEFLNDLWAFDLNSLR---TKAMWELVEPAEGS-------------------------PRPAQRTGHICVTFENKIFLFGGT-DCQYHYNDTWVF----------DTTTNMWSELTCIGFIPSPREGHAAALVDDVVYIFGGRGVDGKDLG-----DLGAFKISNQRWYMFQKM-----GPAPTPRSGHSMASMGSRVFVLGG 370          
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Match: A0A2C5WZE5_9PEZI (Tip elongation aberrant protein 1 n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5WZE5_9PEZI)

HSP 1 Score: 82.8 bits (203), Expect = 3.410e-13
Identity = 68/243 (27.98%), Postives = 102/243 (41.98%), Query Frame = 3
Query:  462 PQGAPSPRYAATFVACGTELFLFGGGTSAAGQFFDDLWCFDEILQKWSCCKTFYEIRPSERALVEQDEQNYANDSERAAALEAMKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRCADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYCVPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIHSRQYRPLIDV 1190
            P   PS RY  T    G+++++FGG     G F +DL  FD  L +       +E+  S   L                   +    T P  R  H++VTF +K+YLFGG+  G   +ND+W          C D     W  ++  G +P  R GHAAA+ D V+YI GG  +  T        LG          +          P+PR GH+M ++ + +++ GG    S    P+ D+
Sbjct:  262 PTPRPSGRYGHTLNILGSKIYIFGG--QVEGFFMNDLCAFD--LNQLQSPTNKWEVLISNTEL-------------------SSTPSTMPSPRTNHTVVTFNDKLYLFGGTN-GYEWFNDVW----------CYDPTTNKWSQLDCIGYIPVSREGHAAALVDDVMYIFGGRTEEGT-------DLGDLAAFRITTKRWYTFQNMGPSPSPRSGHSMTSVGKSIVIVGGEP--SSTTNPINDL 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UM69_HETAK9.590e-10799.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0019053F2F5.920e-1530.90uncharacterized protein n=1 Tax=Cantharellus anzut... [more]
L0PDW2_PNEJ81.040e-1426.69Uncharacterized protein n=1 Tax=Pneumocystis jirov... [more]
A0A0W4ZPS4_PNEC81.400e-1427.17Uncharacterized protein n=1 Tax=Pneumocystis carin... [more]
A0A0W4ZSK1_PNEJ75.970e-1427.83Uncharacterized protein n=1 Tax=Pneumocystis jirov... [more]
S8EL50_FOMPI7.970e-1430.57Uncharacterized protein n=1 Tax=Fomitopsis pinicol... [more]
A0A3N2PLU4_9PEZI8.070e-1430.21Kelch repeat-containing protein n=1 Tax=Sodiomyces... [more]
A0A0W4ZX36_PNEMU3.280e-1326.79Uncharacterized protein n=1 Tax=Pneumocystis murin... [more]
A0A165UL50_9APHY3.350e-1331.17Uncharacterized protein n=1 Tax=Daedalea quercina ... [more]
A0A2C5WZE5_9PEZI3.410e-1327.98Tip elongation aberrant protein 1 n=2 Tax=Ceratocy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig962contigH-akashiwo_Contig962:104464..105704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog263815.XP_007872753.1
Preferred nameKEL2
PFAMsKelch_1,Kelch_3,Kelch_4,Kelch_5
Model size1242
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000133,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000755,GO:0000910,GO:0000935,GO:0001100,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005856,GO:0005874,GO:0005875,GO:0005881,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0007049,GO:0007088,GO:0007096,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008360,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0015630,GO:0016020,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0030427,GO:0030428,GO:0031110,GO:0031111,GO:0031113,GO:0031115,GO:0031333,GO:0031500,GO:0032153,GO:0032155,GO:0032187,GO:0032231,GO:0032271,GO:0032272,GO:0032465,GO:0032505,GO:0032506,GO:0032878,GO:0032879,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035371,GO:0035838,GO:0035839,GO:0035840,GO:0036214,GO:0042763,GO:0042764,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043332,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045786,GO:0045839,GO:0045930,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051128,GO:0051129,GO:0051179,GO:0051285,GO:0051286,GO:0051301,GO:0051302,GO:0051493,GO:0051494,GO:0051641,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0060627,GO:0061160,GO:0061172,GO:0061245,GO:0061246,GO:0061640,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071944,GO:0071963,GO:0072697,GO:0090337,GO:0097427,GO:0099070,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120038,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902405,GO:1902410,GO:1902486,GO:1902903,GO:1902904,GO:1903047,GO:1904511,GO:1904758,GO:1990151,GO:1990615,GO:1990752,GO:1990778,GO:1990896,GO:2000099,GO:2000100,GO:2000114,GO:2000769,GO:2000771
Exons1
Evalue1.96e-14
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota,38C0C@33154|Opisthokonta,3NXSA@4751|Fungi,3QR0G@4890|Ascomycota,3MDS5@451866|Taphrinomycotina
Descriptioncell end marker
Cds size531
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.1668005-UTR-H-akashiwo_Contig962:104463..1051731681388060.1668005-UTR-H-akashiwo_Contig962:104463..105173Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig962 104464..105173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.1785836-CDS-H-akashiwo_Contig962:105173..1057041681388060.1785836-CDS-H-akashiwo_Contig962:105173..105704Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig962 105174..105704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig962.1.1prot_H-akashiwo_Contig962.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig962 105174..105704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig962.1.1

>prot_H-akashiwo_Contig962.1.1 ID=prot_H-akashiwo_Contig962.1.1|Name=mRNA_H-akashiwo_Contig962.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=177bp
MKVLTRPDMRWAHSMVTFEEKMYLFGGSAPGGLNYNDLWVLKKQAAGDRC
ADGKPMVWEAVELEGDVPEQRCGHAAAVYDGVLYIQGGNVQNQTFGCTYC
VPLGGGGGSGPRAFQKIEVLEGSQEPAPRIGHAMVALARKLLVYGGRDIH
SRQYRPLIDVCHLGSCSTAPPGAEEEE
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mRNA from alignment at H-akashiwo_Contig962:104464..105704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig962.1.1 ID=mRNA_H-akashiwo_Contig962.1.1|Name=mRNA_H-akashiwo_Contig962.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1241bp|location=Sequence derived from alignment at H-akashiwo_Contig962:104464..105704+ (Heterosigma akashiwo CCMP452)
GGCGGATCTTCGAAGTTCCATCCTCGGCACCCTCTCCAAAAGCAACCTCT TATACATAGCAGAATTTCTGGGCCTGGGCGATCTCGTCACCCTCGGGGGA TGCTGCAAACAGCTAGCTGAGTACGCGTCATTCGAACCGCTGTACCTCAA GTTCATCAAATCTGAGGAGCAGAAGTCGGGTTGCACGCACCTGTCTTCGG ACTCAGAAGGATGGAGGGGTGTTCTGAAATCCTGGTCAGCTGTAGACAGG TGGAACTGGTCGACCACCCTGACTTTTTCGGCCCCAGAGGCTATTCCTGA ACCACGCTATCTGCATAGAATTACCAGAGGCTCGCAACCGGACACCATGT ATCTTTTTGGTGGCGCAGGCCCCGAACATTGCTACGGTGACCTTTGGAAG TTTCAGAAACGAGGGGATGCCATCGCCTCCGAAAAAAGATGTCTGAGTGG GCCCTGGGCGTCCCCAGGGAGCTCCCTCCCCAAGGTATGCTGCCACATTT GTGGCTTGTGGCACTGAACTCTTCCTGTTTGGAGGGGGAACGAGCGCTGC TGGACAGTTTTTCGATGACTTGTGGTGCTTTGACGAGATACTACAGAAGT GGAGTTGCTGCAAAACATTTTACGAAATCCGTCCAAGCGAGCGAGCTCTG GTGGAACAGGACGAACAAAATTATGCCAACGACAGCGAGCGCGCGGCGGC CCTTGAAGCCATGAAGGTACTAACTCGACCCGACATGAGGTGGGCACACT CCATGGTGACCTTCGAAGAGAAGATGTATCTTTTCGGCGGCAGCGCGCCC GGTGGCCTGAACTACAATGATCTCTGGGTGCTGAAGAAGCAGGCTGCGGG CGACCGCTGCGCGGACGGCAAACCGATGGTGTGGGAGGCGGTCGAGCTGG AAGGGGACGTGCCCGAGCAGCGGTGCGGCCACGCCGCGGCCGTCTACGAC GGCGTCCTGTACATTCAGGGGGGCAACGTCCAGAACCAAACTTTCGGATG CACATACTGCGTCCCGCTGGGGGGCGGCGGCGGCAGCGGCCCCCGCGCCT TTCAGAAGATCGAAGTCCTGGAGGGCTCCCAGGAGCCGGCGCCGCGCATC GGGCACGCCATGGTGGCGCTCGCCCGGAAACTGCTGGTCTACGGCGGCCG CGACATCCACAGCCGCCAGTACCGCCCGCTCATCGACGTGTGCCACCTCG GCTCCTGCTCGACGGCGCCCCCCGGCGCAGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig962:104464..105704+

>mRNA_H-akashiwo_Contig962.1.1 ID=mRNA_H-akashiwo_Contig962.1.1|Name=mRNA_H-akashiwo_Contig962.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=531bp|location=Sequence derived from alignment at H-akashiwo_Contig962:104464..105704+ (Heterosigma akashiwo CCMP452)
ATGAAGGTACTAACTCGACCCGACATGAGGTGGGCACACTCCATGGTGAC
CTTCGAAGAGAAGATGTATCTTTTCGGCGGCAGCGCGCCCGGTGGCCTGA
ACTACAATGATCTCTGGGTGCTGAAGAAGCAGGCTGCGGGCGACCGCTGC
GCGGACGGCAAACCGATGGTGTGGGAGGCGGTCGAGCTGGAAGGGGACGT
GCCCGAGCAGCGGTGCGGCCACGCCGCGGCCGTCTACGACGGCGTCCTGT
ACATTCAGGGGGGCAACGTCCAGAACCAAACTTTCGGATGCACATACTGC
GTCCCGCTGGGGGGCGGCGGCGGCAGCGGCCCCCGCGCCTTTCAGAAGAT
CGAAGTCCTGGAGGGCTCCCAGGAGCCGGCGCCGCGCATCGGGCACGCCA
TGGTGGCGCTCGCCCGGAAACTGCTGGTCTACGGCGGCCGCGACATCCAC
AGCCGCCAGTACCGCCCGCTCATCGACGTGTGCCACCTCGGCTCCTGCTC
GACGGCGCCCCCCGGCGCAGAGGAGGAGGAG
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