mRNA_H-akashiwo_Contig960.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig960.3.1
Unique NamemRNA_H-akashiwo_Contig960.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig960.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig960contigH-akashiwo_Contig960:374267..375905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.6450055-CDS-H-akashiwo_Contig960:374266..3742901681388059.6450055-CDS-H-akashiwo_Contig960:374266..374290Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig960 374267..374290 +
1681388059.654585-CDS-H-akashiwo_Contig960:375162..3752341681388059.654585-CDS-H-akashiwo_Contig960:375162..375234Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig960 375163..375234 +
1681388059.663689-CDS-H-akashiwo_Contig960:375833..3759051681388059.663689-CDS-H-akashiwo_Contig960:375833..375905Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig960 375834..375905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig960.3.1prot_H-akashiwo_Contig960.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig960 374267..375905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig960.3.1

>prot_H-akashiwo_Contig960.3.1 ID=prot_H-akashiwo_Contig960.3.1|Name=mRNA_H-akashiwo_Contig960.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
LYDLLRAQTWLSLPPDHRPRGHVAVADEGNDRVQILSYCPAFSVLVPPLL
DPLNEV
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mRNA from alignment at H-akashiwo_Contig960:374267..375905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig960.3.1 ID=mRNA_H-akashiwo_Contig960.3.1|Name=mRNA_H-akashiwo_Contig960.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1639bp|location=Sequence derived from alignment at H-akashiwo_Contig960:374267..375905+ (Heterosigma akashiwo CCMP452)
CTTTACGATTTACTCCGAGCTCAGGTAGCTATCTGCCTATCAGTATTACT
ATTTTTATAAGTTTAAGCAATCATGAAAAACAAATTCCAATCTATACTAT
ACTGTTTTTTGGACTTATCGTCAAATGCATTTTGGAATTAGTTTTTAAAT
ATATGTTTTATGTGATGTGTATGTGTGTATTCAAATGATGGACGTATGAA
AATAATATGGCAGTGTGCAAAAGCTCATTGCTAATTGGTATGGAATTTTG
ACTTGTGTGACTCAAGGAAGAACAGTCTCACATTTCAGCCACACCAGCTT
AAGTCAAGCCCCTGGTTCCCCGGGCGGTCCTTTCCACATCTGCGAAAATG
AACCTTGGCAATTTTTACCTCGAGTTGTTGTGGAATTTCCTTTTTAATAA
TCTTAGTGGTTTCACGAAAAAAGGAGAGGAGGGAAGAAGTGGTATAGTGG
TGATGCAAGTGTCTTTGCATATATGGCCTGTATGTATTTGGCATTTCCAA
CTCGTTGACTTTTTGGCTGTCGAGAGGTTTTATCTAAGCCACGTTTTTTC
ATAACATGGGCCGGCACTGTGTTGCTTGTATAGTTGCTCACCTGGTATCC
CCTCAACCCAGTGGGGTGTGCACCAGAGCCCTCCTTGTCCCCGTATTTTG
GGCAGCACAAGCCAGCCACTCTCCAACCCTGCCGCCCGCCACCTTGAGAA
CGCCAGACAGCTGTTGCTGGACTGCAAACACACGCCCTGCAAACCAAAAC
AGTTGTGGTGGAAACCAAAGAACCCTCCCTTCCCTTCCCGCCCCGATCCC
ACCTGGGTCTGTGGGCGGCGGCGGTAACGGGCGGCAACGGCGGCGGCGGC
GTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGcCCCAGACCT
GGCTGTCGTTGCCCCcgGACCACCGCCCGCGGGGCCACGTGGCCGTGGCG
GACGAGGGCAATGACCgGGTGAGGGAAAAAATGTAGTTTTTTTTTTTTTT
TTTCTCTTTTCAGTGAACAACTGCTTGGTCGGCAGAGTACTCAACGATGT
TGACCGATAATGAAATCGTGATGGTCGAATCAGCGAACAAAACAAAGGAG
CACTATATCACAGTCTGTTAAAAAGGCTGCGGCGTTTCAAGTTCACCCTT
CATCAGGTATAGATCACAAAACTATCTCAGAAGAAATCCCATCCAAGAAG
AAATGAAAGTATATTATAAATGTATGTATGATACATAACATTAAATATAT
CAAGAGATTGCAGGATCTCTAGAGATGCCATCCATCCAATGTCATACTTG
CTCAGCCATCATCAAGGATGGATTAAAATCCCATGTAATGGATAGATTTC
TATCTCATAGTTGATCAGATTACAACCACTATGCATGGCATGTTAGGCTC
TAAAAACAGACCCATAAACATTATGGTGATGAATAAGTTTTTGAAGTGTG
AAGCGATATAAATGTATAGTAGTTTCATACAGTATGATTTTAGAGTTTGG
AGACGATCTGATCATTTCTGAAGCGGATCTACCCTCCTAAAGTAGGAAGG
ACAAAAATAAAATACAGGTTCAAATTCTGTCATACTGTCCGGCATTCAGC
GTGCTGGTCCCGCCGCTGCTGGATCCATTGAATGAGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig960:374267..375905+

>mRNA_H-akashiwo_Contig960.3.1 ID=mRNA_H-akashiwo_Contig960.3.1|Name=mRNA_H-akashiwo_Contig960.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig960:374267..375905+ (Heterosigma akashiwo CCMP452)
CTTTACGATTTACTCCGAGCTCAGACCTGGCTGTCGTTGCCCCcgGACCA
CCGCCCGCGGGGCCACGTGGCCGTGGCGGACGAGGGCAATGACCgGGTTC
AAATTCTGTCATACTGTCCGGCATTCAGCGTGCTGGTCCCGCCGCTGCTG
GATCCATTGAATGAGGTG
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