mRNA_H-akashiwo_Contig96.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.7.1
Unique NamemRNA_H-akashiwo_Contig96.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A8K1CA36_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA36_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 8.190e-24
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRY---VGKHHH 338
            HRS+AE  IA V  +EVDGH+AVCDGGGGALGHP+EYIQLDT     PQTCKYCGLRY    G H H
Sbjct:   53 HRSDAELRIAAVPVVEVDGHVAVCDGGGGALGHPVEYIQLDTVKHFEPQTCKYCGLRYKMKAGSHGH 119          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A6G0WCA7_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.780e-23
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGKHHH 338
            HRS+AE  IAKV  +EVD  +AVCDGGGGALGHPLEYIQL+T     PQTCKYCGLRY  KHHH
Sbjct:   49 HRSDAELRIAKVPVVEVDTDVAVCDGGGGALGHPLEYIQLNTVSKE-PQTCKYCGLRYKMKHHH 111          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A484EAT9_BRELC (zf-CHCC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAT9_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 2.980e-23
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   27 KMSRLITTFGRFALSKGSLFRASTQITARSFATV-----PYA-YGLHRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK 329
            + SR++    R + ++  L   ++++   S +T+     P+     HRS+AE+ IA+V  +EV G IAVCDGGGGALGHP+EYIQLDT+    PQTCKYCG+RY+ K
Sbjct:    4 RSSRVLAIAARASAARAVLPACTSRLQTASLSTIYDRRTPFEDINRHRSDAEQRIAQVPIVEVAGSIAVCDGGGGALGHPVEYIQLDTRKQNTPQTCKYCGIRYMMK 110          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A7S3JV71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV71_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.860e-23
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 3
Query:   84 FRASTQITARSFATVPYAYGLHRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGKHHH 338
            F+ + ++ A + A     +  HRSNAEELI KV PI+V G +AVC+GGGGALGHPLEYIQL+T D T P  C YCGLR++    H
Sbjct:   26 FQGNVRMMATAGANSVKYWNPHRSNAEELINKVEPIKVKGDMAVCNGGGGALGHPLEYIQLNTVDPTKPAVCLYCGLRFIKDTSH 110          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A812WPQ4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WPQ4_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 6.750e-23
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK 329
            HRSNAE LIA V PIEVDG++AVC+GGGG  GHP E+IQLDT+D   P  CKYCGLRY+ K
Sbjct:    5 HRSNAETLIADVPPIEVDGNMAVCEGGGGENGHPAEWIQLDTRDGRLPAVCKYCGLRYIKK 65          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A2D4BTY1_PYTIN (zf-CHCC domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTY1_PYTIN)

HSP 1 Score: 98.6 bits (244), Expect = 8.280e-23
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK-----HHH 338
            HRS+AE+ IA+V  ++V+G +AVCDGGGGALGHPLEYIQLDT     PQTCKYCG+RY  K     HHH
Sbjct:   61 HRSDAEQRIAQVPIVDVEGDVAVCDGGGGALGHPLEYIQLDTVRHNEPQTCKYCGIRYRKKPGYHGHHH 129          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A6A4ABD7_9STRA (zf-CHCC domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ABD7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.590e-23
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:   57 RFALSKGSLFRASTQITARSFATV-----PYA-YGLHRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGKHHH 338
            R A S  S FR    + + SF+T+     PY     HRS+AE+ IAKV  +EV G +AVCDGGGGALGHP+EYIQLDT+     QTCKYCG+RY  K  H
Sbjct:   20 RAAASAASAFR----LQSASFSTIYDLKTPYEDVNRHRSDAEQRIAKVPIVEVAGTVAVCDGGGGALGHPVEYIQLDTRKHHTAQTCKYCGVRYKMKEGH 115          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: F0X2A7_9STRA (Uncharacterized protein AlNc14C931G12647 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.910e-22
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  111 RSFATV------PYAYGLHRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK 329
            RSFAT+      P     HRS+AE  IA+V  +EV+G++AVCDGGGGALGHPLEYIQLDT +   PQTCKYCG+RY  K
Sbjct:   37 RSFATIYDAKPRPDDTVHHRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKMK 115          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A662WUI1_9STRA (zf-CHCC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUI1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 8.040e-22
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK 329
            HRS+AE  IAKV  +EV G +AVCDGGGGALGHPLEYIQLDT     PQTCKYCG+RY  K
Sbjct:   45 HRSDAELRIAKVPVVEVAGSVAVCDGGGGALGHPLEYIQLDTVKHNTPQTCKYCGVRYKMK 105          
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Match: A0A2P4YRH7_9STRA (NADH dehydrogenase (Ubiquinone) Fe-S protein 6 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YRH7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.330e-22
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 3
Query:  147 HRSNAEELIAKVAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK 329
            HRS+AE+ IAKV  +EV   +AVCDGGGGALGHP+EYIQLDT+   +PQTCKYCG+RY  K
Sbjct:   34 HRSDAEQRIAKVPIVEVASGVAVCDGGGGALGHPVEYIQLDTRKHNSPQTCKYCGVRYKMK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CA36_PYTOL8.190e-2470.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WCA7_9STRA1.780e-2373.44zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A484EAT9_BRELC2.980e-2346.73zf-CHCC domain-containing protein n=1 Tax=Bremia l... [more]
A0A7S3JV71_9STRA4.860e-2355.29Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812WPQ4_9DINO6.750e-2370.49Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A2D4BTY1_PYTIN8.280e-2365.22zf-CHCC domain-containing protein (Fragment) n=1 T... [more]
A0A6A4ABD7_9STRA8.590e-2354.00zf-CHCC domain-containing protein n=2 Tax=Phytopht... [more]
F0X2A7_9STRA1.910e-2262.03Uncharacterized protein AlNc14C931G12647 n=1 Tax=A... [more]
A0A662WUI1_9STRA8.040e-2272.13zf-CHCC domain-containing protein n=2 Tax=Nothophy... [more]
A0A2P4YRH7_9STRA8.330e-2268.85NADH dehydrogenase (Ubiquinone) Fe-S protein 6 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:463070..464163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000021175
PFAMszf-CHCC
Model size653
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons3
Evalue6.35e-27
EggNOG OGsKOG3456@1|root,KOG3456@2759|Eukaryota,1MH8X@121069|Pythiales
DescriptionNADH dehydrogenase iron-sulfur protein 6, mitochondrial. Source PGD
Cds size312
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.4053416-UTR-H-akashiwo_Contig96:463069..4630981681388059.4053416-UTR-H-akashiwo_Contig96:463069..463098Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 463070..463098 +
1681388059.439957-UTR-H-akashiwo_Contig96:463851..4641631681388059.439957-UTR-H-akashiwo_Contig96:463851..464163Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 463852..464163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.4146106-CDS-H-akashiwo_Contig96:463098..4632001681388059.4146106-CDS-H-akashiwo_Contig96:463098..463200Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 463099..463200 +
1681388059.4231262-CDS-H-akashiwo_Contig96:463376..4634701681388059.4231262-CDS-H-akashiwo_Contig96:463376..463470Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 463377..463470 +
1681388059.4315665-CDS-H-akashiwo_Contig96:463735..4638511681388059.4315665-CDS-H-akashiwo_Contig96:463735..463851Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 463736..463851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.7.1prot_H-akashiwo_Contig96.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 463099..463851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.7.1

>prot_H-akashiwo_Contig96.7.1 ID=prot_H-akashiwo_Contig96.7.1|Name=mRNA_H-akashiwo_Contig96.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
MSRLITTFGRFALSKGSLFRASTQITARSFATVPYAYGLHRSNAEELIAK
VAPIEVDGHIAVCDGGGGALGHPLEYIQLDTKDLTAPQTCKYCGLRYVGK
HHH*
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mRNA from alignment at H-akashiwo_Contig96:463070..464163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.7.1 ID=mRNA_H-akashiwo_Contig96.7.1|Name=mRNA_H-akashiwo_Contig96.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-akashiwo_Contig96:463070..464163+ (Heterosigma akashiwo CCMP452)
GCGGCTCAAGCCTGAGCTGCTGTAAAAAAATGTCTCGACTGATCACCACC TTCGGAAGATTTGCCCTATCCAAGGGAAGTCTGTTCCGGGCTTCTACGCA AATCACCGCAAGATCTTTTGCAACTGTGCCGGTGAGCCACTGAAAATGGA AATGAATGATGAAAAGTTTTTTTGTTTCTCTGCCGTTCACCACGCAGCAG AGATATATATTATGCTGGCAATCATTCATTATCATATTGCCATGTAAACA AGCGTAGCCCCTACTTTTCTTTTGTGTGAAAACAAAATCAATAATTGTGA TGTGAAGTACGCATACGGCCTCCATAGAAGTAATGCGGAAGAGCTGATTG CCAAGGTAGCTCCGATTGAAGTTGATGGACACATAGCTGTTTGTGATGGA GGTGAGTCTTCATGGAAAAAATCGCCAATTCGCTATCCAGACCACGAGAC AGCGTAGCTTATTCTGTCATTCCAACTTTCCCCCCGAAACTATATGTTAT TCACACCAGCAGAAGAGTATGTAGTAGCACAAGGGTGTACTAATTTTTCA GGGGCGACAATGGGAGGTAGCAAGTTACAATTTTTTTTTTTTTTTGCTTT TGTAAAAAAATAATAATTATATATATTAAAAAATAATAATAATAAATAAA TAAAACGAACCACCAGGTGGAGGTGCCTTGGGACATCCTCTTGAGTACAT CCAGCTTGATACAAAGGATCTCACTGCACCACAGACTTGCAAGTACTGCG GCCTCCGTTATGTGGGGAAGCACCACCACTAGATCTAACTTTGTCTTCTG CATGTCCCACTGTCGCCAAAAATTGTTGTTAGGATGCTGAGAAAGAGCCT ATGGTGGCTGATATTTCTGCATAATGGAGAATGGAGGTCTGATGTGATAA AAGCATGATTTCTCGTCAGCCTCGATGTTCGATCACTTTTATGTACCTAT ATTTTTTCCCTTCTTTTTTGGCACTATAAAATGTAAACTGGCATGTATTG TTGTACCATGATGATGATGATGATATAAAATTTGTTTAGACATGGTGGAA GGAATTTTTTAACAACTACAATTATTTATTGAAGTATACCTTTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig96:463070..464163+

>mRNA_H-akashiwo_Contig96.7.1 ID=mRNA_H-akashiwo_Contig96.7.1|Name=mRNA_H-akashiwo_Contig96.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig96:463070..464163+ (Heterosigma akashiwo CCMP452)
ATGTCTCGACTGATCACCACCTTCGGAAGATTTGCCCTATCCAAGGGAAG
TCTGTTCCGGGCTTCTACGCAAATCACCGCAAGATCTTTTGCAACTGTGC
CGTACGCATACGGCCTCCATAGAAGTAATGCGGAAGAGCTGATTGCCAAG
GTAGCTCCGATTGAAGTTGATGGACACATAGCTGTTTGTGATGGAGGTGG
AGGTGCCTTGGGACATCCTCTTGAGTACATCCAGCTTGATACAAAGGATC
TCACTGCACCACAGACTTGCAAGTACTGCGGCCTCCGTTATGTGGGGAAG
CACCACCACTAG
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