mRNA_H-akashiwo_Contig96.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.6.1
Unique NamemRNA_H-akashiwo_Contig96.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 617 bits (1592), Expect = 1.200e-222
Identity = 304/312 (97.44%), Postives = 310/312 (99.36%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANFERH 936
            MVAVYVDDLVISGSSQA+VSEFKQSLASKY+LTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPAC+TP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSD+DFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL EMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADILTKALNAANFERH
Sbjct:   32 MVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERH 343          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 301 bits (771), Expect = 4.460e-99
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYL 453
            MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPAC+TPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQINPEPKHFEAVQRAFRYL
Sbjct:  118 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 259 bits (663), Expect = 8.600e-76
Identity = 130/310 (41.94%), Postives = 197/310 (63.55%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAAN 924
            +++VYVDD+V++ S ++ +S  K++++  YN++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++DADFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LL  +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + ++ T  Q+AD+ TK L+  N
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 209 bits (532), Expect = 1.190e-60
Identity = 117/309 (37.86%), Postives = 177/309 (57.28%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPT--PGFKAELSDANL--YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            ++A++VDD  I+GSS  ++SE+K+ +  KY LTD GE++ +LGIKV RD+  +   LSQ ++I   LA+F    L     P+D  + LT +  P   A+++      YR  +G+L + A  TRP+++FA+  L +   NP   H+EAV+R FRYL GT++  L+ GG    L  + DAD  +      ++TGY+  +    + WSSK Q  VT ST EAEY+A   A K+ MW+R LL E+  P   PT +  D+ + +    D   + R +H  + YH  +  V  GT+R+ +  T+D  AD LTKAL
Sbjct:  140 VLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQE-HRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 447          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 208 bits (529), Expect = 1.950e-60
Identity = 117/309 (37.86%), Postives = 180/309 (58.25%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANL----YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            ++A++VDD +I+GSS  +++E+K+ LA+KY LTD G ++ +LGIKV RD       LSQ ++I+  + +F  D L    TP+D T  L+ +   ++    A +    Y+  +G+L + A  TRP++AFAV  L +   NP   H+EAV+R FRYL GT++ SL  GG    L  + DAD  +     +++TGY+  +    I WSSK Q  VT ST E+EY+A   A K+ +WLR L+ E+  P  EPT +  D+ + +    D   + R +H  + YH  +  +  G+IR+ +  T D  AD+LTKAL
Sbjct:  118 ILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGGGQRGLEGYVDADGASQE-HRRAITGYVFLVDGGAISWSSKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFRPLSEPTTLHSDSQSAIALTVDGSYHARTKHIDIRYHFIRYSIDAGSIRLLYCPTADMTADVLTKAL 425          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: UPI000BBE8B6F (uncharacterized protein LOC111201737 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE8B6F)

HSP 1 Score: 202 bits (514), Expect = 7.920e-59
Identity = 113/309 (36.57%), Postives = 174/309 (56.31%), Query Frame = 1
Query:   10 VYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANFE 930
            VYVDD++I+GSS   + +F  SL+ ++++ D G L+  LGI+V R       HLSQ  +I D L +  +    +  TP+     L+ T G  + + D   YR  VG+L +++  TRP++AFAV+KL +    P  +H+ AV+R  RYL GT+S  +      +  L AF+DAD+  +R D  S   Y+++LG  P+ WSSK Q  V  S+ EAEY ++ S   ++ W+ SLL E+G     P  +  DN   +  A + + + R +H  + YH  + QV  G +R+  + THDQ+AD LTK L+   FE
Sbjct:   69 VYVDDIIITGSSPQHIDQFINSLSQRFSIKDLGPLSYFLGIEVQRSSNG--LHLSQHRYITDLLQRMQMSTTNSVSTPMCPNTTLSLTSG--SVMDDPTRYRMAVGSLQYLS-LTRPDIAFAVNKLSQYMHQPTTEHWTAVKRVLRYLSGTRSHGITFSSRHNPTLHAFTDADWAGNRDDYTSTGAYVVYLGSHPVAWSSKKQTGVARSSTEAEYRSVASTAAELCWITSLLHELGIVSQTPA-IYCDNMGAMYLAANPVFHSRMKHLALDYHFVRHQVQTGVVRVSHVSTHDQLADALTKPLSRPRFE 371          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.680e-58
Identity = 113/309 (36.57%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    4 VAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLT----PTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            + +YVDDL+I+    A ++  K  +   + L D G +  ILGI+V  D   K   L Q  +I D + +F         TPID ++ +T    P    +  +     +RS++G+L+++A  TRP++A AV +L R   NP  +H++A  +  RYLKGT++  +  GG +   L A+SDAD+ +DR D +SV+G +L L  AP+VW +  Q  V  ST EAEY+AL   VK+ MW R LL  +G  Q   T + EDN   +  A +     R +H  + YH  +E++  G I + +I T +QVAD LTK L
Sbjct:   67 ICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A251SEE8_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SEE8_HELAN)

HSP 1 Score: 204 bits (519), Expect = 2.420e-58
Identity = 110/313 (35.14%), Postives = 180/313 (57.51%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRL--GGDLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANFER 933
            ++ +YVDDL+I+ +S  ++SEFK  +  ++ +TD G+L   LG++V  +  N    LSQ  ++K+ L K+ +       TP+D+ + L+       E  + ++YRS+VG+L ++ N TRP++ FAV K+ R    P+  H+EA +R  +Y+KGT  + +    GG   L  FS++D+  +  D KS +GYI  LG  PI W SK Q  V  S+ EAEY+AL  A    +WL+ +L E+    + P P+  DN + +  A D + + +++H  V YH  ++ +    + + F  T DQ+ADI+TKAL   +F R
Sbjct:   50 VICLYVDDLIIASNSMKLISEFKDEMKKEFEMTDMGKLHYFLGMEVSYEDGN--IILSQKKYMKNLLEKYRMSQCNTVSTPMDYGIKLSKDD--PEEFINESMYRSLVGSLMYLTN-TRPDIMFAVSKISRFMEAPKRSHWEAAKRILKYVKGTLDQGITYSKGGKQKLIGFSNSDYAGNVDDSKSTSGYIFHLGSGPISWQSKKQKVVALSSTEAEYMALTLAGCQAIWLKGILDELQGKDNYPIPIYCDNKSTICLAKDSVYHGKSKHIRVKYHFIRDLIRREDVTILFCATKDQLADIMTKALQPKDFLR 357          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A6G0W5T1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5T1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.990e-58
Identity = 115/309 (37.22%), Postives = 173/309 (55.99%), Query Frame = 1
Query:    7 AVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLR--AFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANF 927
            AVYVDD+ ++G S+  +     ++ +K+ +TD+GEL  ILGI VVR++  K   LSQT F+++ L +F +       TP       T T    AE +    Y+S+VG L ++ + TRP++A +V  L     +    H+   +R  +YLKGT  ++L   G L  +  AF DADF ND  D KSVTG+++ L  A +V++SK Q  V  ST E E++A   A K I+WL  LL E+ C  + P  +  DN + ++ A     + R +H  + YH  K+ VS G I + +I T +Q+AD LTK+L  A F
Sbjct:  267 AVYVDDITLAGKSEIELDSVSNAIKAKFQVTDKGELGFILGIHVVRNRSTKTLKLSQTKFVEELLTRFNMADCHPVATP---QAQGTATDDIHAEDTRNVPYQSLVGALQYLVSATRPDIANSVRYLSSHNHDHNQTHWRMAKRVLKYLKGTSDKALTFQGTLTGQPVAFCDADFANDLNDSKSVTGFVVMLAGAAVVYASKKQSLVGQSTTEVEFIAAAEAAKSIIWLAELLTELRCTSNGPITLFVDNQSAIQVAQRTSAHGRTKHIRLRYHFLKDLVSEGMIHLEYINTTEQIADTLTKSLVPARF 572          
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 211 bits (538), Expect = 4.450e-58
Identity = 119/309 (38.51%), Postives = 176/309 (56.96%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANL----YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV-LRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            ++AV+VDD +I+G S ++ + +K  L+++Y LTD G ++ +LGIKV RD   +   LSQ S+I   + +F  D L    TP+D  + L+ T   ++ L  A +    YR  +G L + A  TRP++AFAV  L +   NP   H+EAV+R FRYL GT+  SL  GG    L  F DAD  +     +++TGY+  +    + W+SK Q  VT ST E+EY+A   A K+ +WLR  + E+  P  EPT +  DN A +    D   + R +H  + YH  +  +  G+IR+ +  T DQ ADILTKAL
Sbjct: 1204 VLAVHVDDCIITGDSGSLNNSYKTQLSTRYKLTDLGPVSWVLGIKVTRDLEARTLSLSQHSYIDSIITRFNFDDLKPISTPMDPHLQLSKTQCPESALDVARMKRVPYREAIGALMYAAMGTRPDIAFAVSTLAQYSENPGWTHWEAVKRVFRYLVGTRHLSLVYGGGKDGLEGFVDADGSSQE-HRRAITGYVFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKEAIWLRRFIGEVFQPLSEPTTLHGDNQAAIALTKDGSYHARTKHIDIRYHFIRYSIEAGSIRLIYCPTDDQTADILTKAL 1511          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.200e-22297.44Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK4.460e-9998.68Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK8.600e-7641.94Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4S4K468_9APHY1.190e-6037.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VSW8_TRAPU1.950e-6037.86Retrovirus-related Pol polyprotein from transposon... [more]
UPI000BBE8B6F7.920e-5936.57uncharacterized protein LOC111201737 n=2 Tax=Brass... [more]
A0A6A3JMT1_9STRA1.680e-5836.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A251SEE8_HELAN2.420e-5835.14Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A6G0W5T1_9STRA2.990e-5837.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2G8SFR3_9APHY4.450e-5838.51Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:455618..456553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size936
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.73e-55
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size936
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.3797054-CDS-H-akashiwo_Contig96:455617..4565531681388059.3797054-CDS-H-akashiwo_Contig96:455617..456553Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 455618..456553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.6.1prot_H-akashiwo_Contig96.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 455618..456553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.6.1

>prot_H-akashiwo_Contig96.6.1 ID=prot_H-akashiwo_Contig96.6.1|Name=mRNA_H-akashiwo_Contig96.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=312bp
MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDK
RNKCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSD
ANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRY
LKGTQSESLRLGGDLVLRAFSDADFCNDRVDGKSVTGYILFLGDAPIVWS
SKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHEPTPVVEDN
SACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIL
TKALNAANFERH
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mRNA from alignment at H-akashiwo_Contig96:455618..456553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.6.1 ID=mRNA_H-akashiwo_Contig96.6.1|Name=mRNA_H-akashiwo_Contig96.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=936bp|location=Sequence derived from alignment at H-akashiwo_Contig96:455618..456553+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTCTACGTCGATGATTTGGTCATCAGTGGCAGCTCTCAAGC TATTGTCTCTGAATTCAAGCAGTCTCTCGCATCCAAATACAATCTCACTG ATCAGGGGGAACTCACCCAAATCCTTGGCATCAAGGTTGTTCGCGATAAG CGGAACAAATGTTTTCATCTTTCCCAAACCTCTTTCATCAAGGACGCGCT GGCCAAATTCGGGCTCGACTATCTTCCCGCGTGTAGAACGCCTATTGATC ACACTGTGGATCTCACACCTACACCCGGATTCAAGGCTGAGCTCTCCGAT GCGAACCTGTACCGGTCCATGGTTGGGACGCTGGCCTGGGTTGCGAACTG GACAAGACCGGAGCTTGCTTTTGCAGTCCACAAGCTTCAGCGTACTCAGA TTAATCCGGAGCCCAAACATTTTGAGGCGGTCCAGCGTGCATTTCGTTAC CTGAAGGGCACTCAGTCTGAATCCCTGCGGCTGGGTGGTGATCTGGTGCT ACGAGCTTTTTCTGATGCGGATTTCTGTAATGACCGTGTTGATGGAAAGT CGGTTACCGGCTATATTCTCTTTTTGGGTGATGCACCTATTGTCTGGTCG TCAAAACTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAATATTT GGCTCTCCGTTCGGCGGTTAAAGATATCATGTGGCTCCGCTCTCTTCTTG CTGAAATGGGGTGTCCTCAGCATGAGCCCACTCCTGTTGTTGAAGACAAC AGTGCCTGTGTTGAGTGGGCCAATGACATGTTGGTTAATAAAAGGAATAG ACACTTCCACGTGTCTTATCATCTTGCTAAGGAGCAGGTGAGCCTTGGTA CTATCAGAATGTTTTTCATCAAAACTCATGATCAAGTGGCTGATATTCTG ACCAAGGCCCTGAATGCAGCTAATTTTGAGAGGCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig96:455618..456553+

>mRNA_H-akashiwo_Contig96.6.1 ID=mRNA_H-akashiwo_Contig96.6.1|Name=mRNA_H-akashiwo_Contig96.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=936bp|location=Sequence derived from alignment at H-akashiwo_Contig96:455618..456553+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTCTACGTCGATGATTTGGTCATCAGTGGCAGCTCTCAAGC
TATTGTCTCTGAATTCAAGCAGTCTCTCGCATCCAAATACAATCTCACTG
ATCAGGGGGAACTCACCCAAATCCTTGGCATCAAGGTTGTTCGCGATAAG
CGGAACAAATGTTTTCATCTTTCCCAAACCTCTTTCATCAAGGACGCGCT
GGCCAAATTCGGGCTCGACTATCTTCCCGCGTGTAGAACGCCTATTGATC
ACACTGTGGATCTCACACCTACACCCGGATTCAAGGCTGAGCTCTCCGAT
GCGAACCTGTACCGGTCCATGGTTGGGACGCTGGCCTGGGTTGCGAACTG
GACAAGACCGGAGCTTGCTTTTGCAGTCCACAAGCTTCAGCGTACTCAGA
TTAATCCGGAGCCCAAACATTTTGAGGCGGTCCAGCGTGCATTTCGTTAC
CTGAAGGGCACTCAGTCTGAATCCCTGCGGCTGGGTGGTGATCTGGTGCT
ACGAGCTTTTTCTGATGCGGATTTCTGTAATGACCGTGTTGATGGAAAGT
CGGTTACCGGCTATATTCTCTTTTTGGGTGATGCACCTATTGTCTGGTCG
TCAAAACTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAATATTT
GGCTCTCCGTTCGGCGGTTAAAGATATCATGTGGCTCCGCTCTCTTCTTG
CTGAAATGGGGTGTCCTCAGCATGAGCCCACTCCTGTTGTTGAAGACAAC
AGTGCCTGTGTTGAGTGGGCCAATGACATGTTGGTTAATAAAAGGAATAG
ACACTTCCACGTGTCTTATCATCTTGCTAAGGAGCAGGTGAGCCTTGGTA
CTATCAGAATGTTTTTCATCAAAACTCATGATCAAGTGGCTGATATTCTG
ACCAAGGCCCTGAATGCAGCTAATTTTGAGAGGCAC
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