mRNA_H-akashiwo_Contig96.21.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.21.2
Unique NamemRNA_H-akashiwo_Contig96.21.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 617 bits (1591), Expect = 3.020e-221
Identity = 306/310 (98.71%), Postives = 308/310 (99.35%), Query Frame = 1
Query:  223 LMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATNF 1152
            LMVAVYVDDLVISGSSQA+VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL+EMGCPQ EPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNA NF
Sbjct:   31 LMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 303 bits (777), Expect = 6.870e-99
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 1
Query:  223 LMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 678
            LMVAVYVDDLVISGSSQA+VSEFKQSLASKY+LTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL
Sbjct:  117 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 301 bits (772), Expect = 2.750e-90
Identity = 168/488 (34.43%), Postives = 253/488 (51.84%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPVL--------------------------------------------------------------------------------------------------------MVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATN 1149
            W+EA+  E +S+     + LVD P GAN++G RW+L+KK+DADG L K+KARL A+G++Q  G+DY  TFSPV+                                                                                                        +++VYVDD+V++ S ++ +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LL+ +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + Y+ T  Q+AD+ TK L+  N
Sbjct:  499 WREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A2Z7CIL3_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CIL3_9LAMI)

HSP 1 Score: 241 bits (615), Expect = 8.470e-73
Identity = 131/383 (34.20%), Postives = 216/383 (56.40%), Query Frame = 1
Query:   16 IEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDY--QQTFSPVLMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATNF 1152
            ++ E+++I +  T+ L  LP    VIG +WV   K +A+G + ++KARLVA+G+ QK+G+DY  ++     L V +YVDDL+ +G+S  +  +FK+++A ++ ++D G ++  LGI+V + + N    +SQ  + K+ L KF +       TP+     L+       E  D   ++S+VG+L ++   TRP++ F V  + R   NP   H    +R  RY+KGT +  +      D  L+ + DSDF  D  D KS TG++ FLG   I WSSK Q  VT S+ E+EY+A  S     +WLR LL E+   + E T +  DN + ++ A + + ++R++H    YH  +E ++   + + ++KT D+VADI TK L   +F
Sbjct:    1 MDEEIHAIVKNDTWELTSLPKNHQVIGVKWVYKAKKNANGEVERYKARLVAKGYKQKHGVDYYVKKEDGYFLFVCIYVDDLIFTGNSSRMFDDFKKAMAREFEMSDMGLMSYYLGIQVRQTEEN--IFVSQEGYAKEVLKKFNMLNCKPVNTPMQFGTKLSRMKQDGEEEVDPTTFKSLVGSLRYLT-CTRPDILFAVGIVSRFMENPTESHMMTAKRILRYIKGTVNYGIAYSSSNDFKLKGYCDSDFAGDIDDRKSTTGFVFFLGKNAISWSSKKQPIVTLSSCESEYVAATSCTCHAIWLRRLLKELHLEEEEATKIFIDNKSAMDLAKNPVFHERSKHIDTRYHFIRECIAKKEVELKHVKTMDKVADIFTKPLKFDSF 380          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: UPI0009F3B38B (uncharacterized protein LOC110116416 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F3B38B)

HSP 1 Score: 241 bits (615), Expect = 1.150e-72
Identity = 140/397 (35.26%), Postives = 223/397 (56.17%), Query Frame = 1
Query:   16 IEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPV---------------LMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFG-LDYLPACKTPLDHTVDLTPTPGFKAEL-SDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRL-GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATNF 1152
            +  E  ++ ++GT+TLV   P  N++G +W+   KF+ DG   +HKARLVA+GF Q++G+DY  TFSP                L +  YVDDL+++G+ Q  + +   +L S++ + + G ++  LGI+V+         LSQ+ +I + L K G LD    CK  L       P P  +++L     LY+ +VG+L +V   TRP++A+ V+ L +    P   HF+ +QR  RYLKGT   +  +    L LRAF+D D+  +  D +S++G+  FLGD  + WS K Q  V  S+ EAEY AL +   DI+WLR LL +      +PTP+  DN + +  AN+ + + R +H  V YH  ++ +    + + +I +HDQ+ADI TK+L+A+ +
Sbjct:    1 MSAEFEALVDQGTWTLVPPHPTQNLLGCKWLYKSKFNLDGTFTRHKARLVAQGFKQEFGIDYTYTFSPSKADPALFLYHKEQTQLYLLAYVDDLLLTGNDQIEIEKLLTNLNSQFRMRNLGTVSHFLGIQVIPYSTGLL--LSQSRYITEILNKAGMLD----CKPALSPLSTKLPIPSHESQLYPHPQLYKQLVGSLQYVTI-TRPDVAYAVNYLCQHMHQPYLLHFQHLQRVLRYLKGTTHYAFPIISSTLNLRAFADFDWAANVQDCRSISGFCTFLGDNLLSWSVKKQPTVAHSSTEAEYRALATLASDILWLRQLLADFMILTPQPTPIFCDNVSTIALANNPVFHARTKHIEVDYHFIRDCIKGQHVTVHHIASHDQIADIFTKSLSASRY 390          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A2I0XAK1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XAK1_9ASPA)

HSP 1 Score: 248 bits (632), Expect = 2.050e-71
Identity = 153/489 (31.29%), Postives = 236/489 (48.26%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPVLMVA-------------------------------------------------------------------------------------------------------VYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDAN--LYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRL-GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATNF 1152
            W+ A+  E  ++  +GT+ LV   P  NV+G +W    K+ ADG + ++KARLVA+GF Q+YG+DYQ+TFSPV  +                                                                                                        VYVDD++++G+ Q  + +  Q+L S++++ D G+L+Q LGI+V         HLSQ  F +  L + G+       TP     + T     +A L+ AN  LYR + G+L ++   TRP+++F V+K+ +   NP   HFE+++R  RY+ GT    L L GGDL LR+++D+D+  D  D KS+TGY  FLG + I WS K Q AV  S+ EAEY AL +A  ++ W+R LL E+ CPQ  PTP+  DN++ +  AN+ + + R +H  V  H  +  +   +I++ +I T DQ+AD+ TK L+ + F
Sbjct:  309 WRTAMSQEFQALQSQGTWDLVPPDPQQNVLGCKWTFRTKYRADGSIARYKARLVAKGFDQEYGIDYQETFSPVAKIPTIRILLILALQHAWPIHQLDVSNAFLHGQLHHTVYMTQPPGFVDNLQPNYVCQLKKALYRLKQSPREWFSTLSGYLHTLGFQFSTSDSSLLIYNKNGTRMYFLVYVDDILLTGNCQQAIKQLLQTLNSRFTMKDLGQLSQFLGIQVTHTPSG--LHLSQGHFAQTILHRAGMLNCKPVSTPSQIKNNSTN----QASLAFANPSLYRQLAGSLQYLT-LTRPDISFAVNKVCQHMQNPTNLHFESLKRLLRYIHGTLHVGLPLSGGDLTLRSYADADWAGDTSDRKSITGYCNFLGHSLISWSVKKQNAVARSSTEAEYRALAAAAAEVTWIRRLLHELDCPQHSPTPLYCDNTSAIALANNPVFHARTKHIDVDCHYIRNCIKENSIQVHHISTKDQIADLFTKPLHQSRF 790          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A2N9FSX9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FSX9_FAGSY)

HSP 1 Score: 239 bits (611), Expect = 7.630e-71
Identity = 137/427 (32.08%), Postives = 220/427 (51.52%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPVLMVAVYVDDLVISGSSQ-----------------------------------------AL-------VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKA 1134
            W+ A+  EL++++   T+ LVDLPP  +V+G +WV   K  +DG + ++KARLVA+GFTQ+YG+DY++TF+PV  ++     L ++ S Q                                         AL       + E K  L+  + + D G L+  LG+++        F+L+Q  +  D L++ GL       T ++    LTP+ G    L D  LYR +VG+L ++   TRP++++ VH++ +    P   H+ AV    RYLKGT    L       L LRA+SD+D+  D  D +S TGY   LG + I W SK Q  V  S+ EAEY AL     +++WLR LL ++G      TP+  DN + ++ A + + ++R +H  +  HL +  +  G++++  + +HDQ+ADI TK+
Sbjct:   71 WQAAMTEELDALSRTRTWDLVDLPPEKSVVGCKWVFKIKTRSDGSIERYKARLVAKGFTQEYGIDYEETFAPVARLSSVRTLLAVAASRQWKLFQMDVKNAFLNGDLSEEVYMQPPPGLSHPPDKVCRLRRALYGDDLSGIQELKAFLSQNFEMKDLGHLSYFLGLEITSSDDG--FYLTQAKYTSDLLSRAGLTDHKILDTLIELNARLTPSSG--ELLPDPTLYRQLVGSLVYLTV-TRPDISYAVHQVSQFMSAPRSTHYAAVLHILRYLKGTLFHGLHFSAQSPLTLRAYSDADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADTTSELLWLRWLLQDLGVSTSSATPIYCDNRSAIQIARNDVFHERTKHIEIDCHLVRHHLLQGSLQLISVSSHDQLADIFTKS 492          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A6V7P508_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7P508_ANACO)

HSP 1 Score: 245 bits (625), Expect = 9.490e-71
Identity = 139/390 (35.64%), Postives = 222/390 (56.92%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSP----------VLMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESL--RLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 1137
            W+ A+  EL ++ +  T+ +V  PP    IG +WV S K  +DG L ++KARLVA G  Q+YG++Y++TF+P          ++++ VYVDD+VI+G+   L+++ KQ L   + + D G LT  LG++V  D      H  Q  +I+D +A   L    +  TPL+  V      G    + D  LYR +VG+L ++   TRP++ F V ++ +   +P   H  AV+R  RYL+G+    L   +G  + L AFSD+++       +SVTG+  FLG++ + W SK Q  V+ S+ E+EY A+ +A  +I WLR LL E+G PQ +PTP   DN++ ++ A + + ++R RH  V  H  +E V    I + ++ T  Q+ D+LTK+L
Sbjct:  345 WQRAMHEELRALQDNQTWDIVQCPPHVKPIGCKWVYSVKLRSDGTLDRYKARLVALGNRQEYGINYEETFAPAAKMTTTSTGIVLLLVYVDDIVITGTDSLLITQLKQHLRQSFHMKDLGHLTYFLGLEVQTDSSGIFLH--QHKYIQDLIALASLQDSSSVDTPLEMNVKYHTAEG--EIIPDPLLYRQLVGSLNYLTI-TRPDIYFAVQQVSQFMHSPRRLHLVAVRRIIRYLRGSPCRGLFFPVGSPMNLVAFSDANWAACPNTRRSVTGWCTFLGNSLVSWKSKKQDRVSKSSTESEYRAMSAACSEITWLRGLLTELGFPQHDPTP--PDNTSAIQIATNPVYHERTRHIEVDCHYIREVVDTRVISLPHVSTSLQIVDVLTKSL 727          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A2N9IBP6_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBP6_FAGSY)

HSP 1 Score: 244 bits (623), Expect = 1.300e-70
Identity = 144/459 (31.37%), Postives = 226/459 (49.24%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPV--------------------------------------------------------------------------LMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNATNF 1152
            W++A+  EL ++ +  T+ LVDLP G + IG +WV   K  +DG + ++KARLVA+G+ Q+YG+DY++TF+PV                                                                          +++ +YVDD++I+G   + +S+FK  L  ++ + D G L+  LG++V  D     ++LSQ  +  D L++ GL       TPL+    LTP  G    LSDA LYR +VG+L ++   TRP++A  VH + +    P   H+ AV    RY+KGT    L       L L A+SD+D+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL     +++ LR LL++MG     PT +  DN + ++ A++ + ++R +H  +  HL +  +S G + +  + + DQ ADI TK      F
Sbjct:  266 WQQAMTEELQALEKTHTWDLVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAAPPGYSDCPDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTALFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRTGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRALADTTSELLALRWLLEDMGVTHSSPTVIHCDNRSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILHLLPVSSSDQTADIFTKTFPPGRF 719          
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Match: A0A2N9IKK6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKK6_FAGSY)

HSP 1 Score: 250 bits (638), Expect = 2.130e-70
Identity = 145/449 (32.29%), Postives = 227/449 (50.56%), Query Frame = 1
Query:    4 WKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKHKARLVARGFTQKYGLDYQQTFSPV-----------------------------------------------------------------------LMVAVYVDDLVISGSSQALVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTK 1131
            W++A+  EL ++ +  T+ LVDLPPG +VIG +WV   K  +DG + ++KARLVA+G+ Q+YG+DY++TF+PV                                                                       +++ +YVDD++I+G   + +S+FK  L  ++ + D G L+  LG++V  D     ++LSQ  +  D L++ GL       TPL+    LTP  G    LSDA LYR +VG+L ++   TRP++A  VH + +    P   H+ AV    RY+KGT    L       L L A+SD+D+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL     +++ LR LL++MG     PT +  DN + ++ A++ + ++R +H  +  HL +  +S G + +  + + DQ ADI TK
Sbjct: 1064 WQQAMTEELQALEKTHTWDLVDLPPGKSVIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPAVLYISLASHPVLMIQHLFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRALADTTSELLALRWLLEDMGVTHSSPTVIHCDNRSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILHLLPVSSSDQTADIFTK 1507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.020e-22198.71Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK6.870e-9998.03Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.750e-9034.43Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A2Z7CIL3_9LAMI8.470e-7334.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009F3B38B1.150e-7235.26uncharacterized protein LOC110116416 n=1 Tax=Dendr... [more]
A0A2I0XAK1_9ASPA2.050e-7131.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FSX9_FAGSY7.630e-7132.08Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6V7P508_ANACO9.490e-7135.64Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A2N9IBP6_FAGSY1.300e-7031.37Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9IKK6_FAGSY2.130e-7032.29Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:1309271..1310731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog102107.XP_008228040.1
PFAMsRVT_2,Retrotran_gag_2
Model size1152
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.44e-69
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,389X1@33090|Viridiplantae,3GNF8@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size1152
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.6005485-CDS-H-akashiwo_Contig96:1309270..13102001681388059.6005485-CDS-H-akashiwo_Contig96:1309270..1310200Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1309271..1310200 -
1681388059.6136236-CDS-H-akashiwo_Contig96:1310509..13107311681388059.6136236-CDS-H-akashiwo_Contig96:1310509..1310731Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1310510..1310731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.21.2prot_H-akashiwo_Contig96.21.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 1309271..1310731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.21.2

>prot_H-akashiwo_Contig96.21.2 ID=prot_H-akashiwo_Contig96.21.2|Name=mRNA_H-akashiwo_Contig96.21.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=384bp
EWKEAIEGELNSIAEKGTFTLVDLPPGANVIGTRWVLSKKFDADGCLVKH
KARLVARGFTQKYGLDYQQTFSPVLMVAVYVDDLVISGSSQALVSEFKQS
LASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYL
PACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFT
VHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDF
CNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKD
IMWLRSLLDEMGCPQREPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHL
AKEQVSLGTIRMFYIKTHDQVADILTKALNATNF
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mRNA from alignment at H-akashiwo_Contig96:1309271..1310731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.21.2 ID=mRNA_H-akashiwo_Contig96.21.2|Name=mRNA_H-akashiwo_Contig96.21.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1461bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1309271..1310731- (Heterosigma akashiwo CCMP452)
GAGTGGAAAGAGGCCATTGAAGGGGAACTAAACAGTATTGCTGAAAAAGG CACCTTCACGTTGGTCGATCTGCCGCCTGGCGCGAATGTTATTGGGACCC GTTGGGTGCTCTCGAAAAAGTTTGACGCCGATGGCTGTCTTGTCAAACAC AAGGCCCGTTTAGTTGCCAGAGGTTTCACTCAAAAGTATGGCCTTGACTA TCAGCAGACTTTCTCACCCGTTGTGAATGCGGCTAGCCTTAGGTTGCTTC TTGCTATCTCAGCGAATAAAGGCTATGCTGTCGACTCTCTTGATATTAGC ACGGCCTTCCTGAATGGAGCTATCACCGACGACGTGTACGTGCGCCAGCC ACCGGGCTATGTTGATCCTGAGAATCCCAACAAGGTCTGGAAGCTGAATA AGGCTTTGTATGGCCTTAAGCAAAGCCCAAGAGTCTGGTATATGGAATTG CACGATCATCTCGAATCACTGGGGTTCACGCGTAGTGGGCATGAATCTTG CCTTTATATTCACCGTGGTGGGGGTAACGAGCTCATGGTTGCGGTCTACG TCGATGATCTGGTCATCAGTGGCAGCTCTCAAGCTCTTGTCTCTGAGTTC AAGCAGTCTCTCGCGTCCAAATACAGTCTCACTGATCAAGGGGAACTCAC CCAGATCCTTGGCATCAAAGTTGTTCGCGATAAGCGGAACAAGTGTTTTC ATCTTTCTCAGACCTCCTTTATCAAGGACGCGCTGGCTAAGTTCGGCCTC GACTATCTTCCCGCGTGTAAAACGCCTCTTGACCACACTGTGGATCTCAC GCCTACTCCCGGGTTCAAGGCTGAGCTCTCTGACGCAAATCTGTATCGGT CCATGGTTGGGACGCTGGCCTGGGTTGCGAACTGGACAAGACCGGAGCTT GCTTTTACAGTCCACAAGCTTCAGCGTACTCAAATTAATCCGGAGCCCAA GCATTTTGAAGCAGTCCAGCGTGCGTTTCGGTACCTGAAAGGCACTCAGT CTGAGTCCCTGCGGCTGGGTGGTGATCTAGTGCTACGAGCTTTTTCCGAT TCAGATTTCTGTAATGACCGTGTTGATGGGAAGTCAGTTACTGGCTATAT TCTCTTTCTTGGTGATGCACCTATTGTCTGGTCTTCAAAACTTCAGGGTG CTGTCACTACCTCTACTGTAGAGGCTGAATATTTGGCTCTCCGTTCAGCG GTTAAAGATATCATGTGGCTCCGCTCTCTTCTTGATGAAATGGGGTGTCC CCAGCGTGAACCCACTCCTGTTGTTGAGGACAACAGTGCCTGTGTTGAGT GGGCCAATGACATGTTGGTTAATAAAAGGAATAGACATTTCCATGTGTCT TATCATCTTGCTAAGGAGCAAGTGAGCCTTGGTACTATCAGAATGTTTTA TATCAAGACTCATGATCAAGTGGCAGATATTCTGACCAAGGCCCTGAATG CAACTAATTTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig96:1309271..1310731-

>mRNA_H-akashiwo_Contig96.21.2 ID=mRNA_H-akashiwo_Contig96.21.2|Name=mRNA_H-akashiwo_Contig96.21.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1152bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1309271..1310731- (Heterosigma akashiwo CCMP452)
GAGTGGAAAGAGGCCATTGAAGGGGAACTAAACAGTATTGCTGAAAAAGG
CACCTTCACGTTGGTCGATCTGCCGCCTGGCGCGAATGTTATTGGGACCC
GTTGGGTGCTCTCGAAAAAGTTTGACGCCGATGGCTGTCTTGTCAAACAC
AAGGCCCGTTTAGTTGCCAGAGGTTTCACTCAAAAGTATGGCCTTGACTA
TCAGCAGACTTTCTCACCCGTTCTCATGGTTGCGGTCTACGTCGATGATC
TGGTCATCAGTGGCAGCTCTCAAGCTCTTGTCTCTGAGTTCAAGCAGTCT
CTCGCGTCCAAATACAGTCTCACTGATCAAGGGGAACTCACCCAGATCCT
TGGCATCAAAGTTGTTCGCGATAAGCGGAACAAGTGTTTTCATCTTTCTC
AGACCTCCTTTATCAAGGACGCGCTGGCTAAGTTCGGCCTCGACTATCTT
CCCGCGTGTAAAACGCCTCTTGACCACACTGTGGATCTCACGCCTACTCC
CGGGTTCAAGGCTGAGCTCTCTGACGCAAATCTGTATCGGTCCATGGTTG
GGACGCTGGCCTGGGTTGCGAACTGGACAAGACCGGAGCTTGCTTTTACA
GTCCACAAGCTTCAGCGTACTCAAATTAATCCGGAGCCCAAGCATTTTGA
AGCAGTCCAGCGTGCGTTTCGGTACCTGAAAGGCACTCAGTCTGAGTCCC
TGCGGCTGGGTGGTGATCTAGTGCTACGAGCTTTTTCCGATTCAGATTTC
TGTAATGACCGTGTTGATGGGAAGTCAGTTACTGGCTATATTCTCTTTCT
TGGTGATGCACCTATTGTCTGGTCTTCAAAACTTCAGGGTGCTGTCACTA
CCTCTACTGTAGAGGCTGAATATTTGGCTCTCCGTTCAGCGGTTAAAGAT
ATCATGTGGCTCCGCTCTCTTCTTGATGAAATGGGGTGTCCCCAGCGTGA
ACCCACTCCTGTTGTTGAGGACAACAGTGCCTGTGTTGAGTGGGCCAATG
ACATGTTGGTTAATAAAAGGAATAGACATTTCCATGTGTCTTATCATCTT
GCTAAGGAGCAAGTGAGCCTTGGTACTATCAGAATGTTTTATATCAAGAC
TCATGATCAAGTGGCAGATATTCTGACCAAGGCCCTGAATGCAACTAATT
TT
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