mRNA_H-akashiwo_Contig96.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.19.1
Unique NamemRNA_H-akashiwo_Contig96.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A3Q1C159_AMPOC (Cystatin-C-like n=3 Tax=Amphiprion TaxID=80969 RepID=A0A3Q1C159_AMPOC)

HSP 1 Score: 59.7 bits (143), Expect = 4.710e-8
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 2 
Query:  116 GLRLGGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFLAV--EIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPWMED 439
            G  +GG   V +  +DE ++ A+N    ++  +RG +  +L+   E+V+  +Q+V+G+KY +T+++A S C+ D+ N++ +         DPE+   YQ   TVW+RPW+ D
Sbjct:   19 GGMVGGFSDVDV--NDEGLQNALN--FAVVQHNRGTNDLYLSQVEEVVKAQRQLVAGMKYVITVKLAKSTCRKDSANEVCAI------QTDPEKTRSYQCKFTVWSRPWIND 120
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: UPI00189DD42D (cystatin C (amyloid angiopathy and cerebral hemorrhage) n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189DD42D)

HSP 1 Score: 58.9 bits (141), Expect = 9.310e-8
Identity = 40/126 (31.75%), Postives = 73/126 (57.94%), Query Frame = 2 
Query:   80 LLLFLYFVTVVNGLRLGGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFL--AVEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCM--ADPEEEELYQ--MTVWARPWMED 439
            LL+F   + V +   +GG Q+V +  +DE ++ AIN  + +++ ++G +  +L    E+V   +QVV+G+KY +TLR+A S C+ D          N+ C    DP++ + Y+   TVW+R W+++
Sbjct:    7 LLVFAAVLAVASTGMVGGFQNVDV--NDEGVQNAIN--VSVVHHNKGTNDMYLRQVEEVVSAERQVVAGMKYRITLRLAKSTCRKDR--------ANDECAIHTDPKKAQPYECVFTVWSRVWLKE 120
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A3B5AAK1_9TELE (Cystatin-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5AAK1_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 1.060e-7
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 2 
Query:   74 KTLLLFLYFVTVVNGL---RLGGIQSVPLADD--DERIRTAINEGMHMLNQDRGASRAFLA--VEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPWMED 439
            + ++L L   TV+ G+    LGG+   P   D  D  ++ A+N    ++  +RG +  +L+   ++V+  +QVV+G+KY +T+R+A S C+ ++ N++ S         DPE+   YQ   TVW+RPW+ D
Sbjct:    5 RNVMLKLVVFTVLAGVFAVGLGGLVGGPSDVDVNDAGVQNALN--FAVVQHNRGTNDLYLSQVAQVVKAERQVVAGMKYFITVRLAKSTCKKNSTNEVCSIHT------DPEKARPYQCKFTVWSRPWISD 127
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A484CJ19_PERFV (Cystatin domain-containing protein n=3 Tax=Percidae TaxID=8165 RepID=A0A484CJ19_PERFV)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-7
Identity = 38/118 (32.20%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:   98 FVTVVNGLRLGGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFLA--VEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPWMED 439
            F   + GL +GG+  V + ++D  +R A+N    ++  +RG++  +L+   E+V+  +QVV+G+KY +T+R+A + C+  +EN++   + ++  MA P     YQ   TVW+RPW+ +
Sbjct:   14 FAVGLGGL-VGGVSDVDINNED--MRNALN--FAVVQHNRGSNDLYLSQVAEVVKAQRQVVAGMKYIITVRMAKTPCRKGSENEVCGIYQDQE-MARP-----YQCTFTVWSRPWLNE 120
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A673BQN6_9TELE (Cystatin-C-like n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673BQN6_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-7
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:   89 FLYFVTV--VNGLRLGGIQSVPLAD---DDERIRTAINEGMHMLNQDRGASRAFL--AVEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPW 430
            F  FV V  V G+ LG +      D   +D  ++ A+N    ++  +RG +  +L  A E+V+  +QVV+G+KY +T+++A +NC+ D  N++ +   N      PE  + YQ   TVW+RPW
Sbjct:    7 FPVFVAVFAVVGISLGSLMPGGRMDVDVNDPGVQNAVN--FAVVQHNRGTNDMYLHQAAEVVKAQRQVVAGMKYIITVKMAKTNCRKDRPNEVCAIHEN------PENAQPYQCEFTVWSRPW 121
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: UPI001CE05DEF (cystatin C (amyloid angiopathy and cerebral hemorrhage) n=1 Tax=Siniperca chuatsi TaxID=119488 RepID=UPI001CE05DEF)

HSP 1 Score: 57.0 bits (136), Expect = 4.620e-7
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 2 
Query:  116 GLRLGGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFLA--VEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPWMED 439
            G   GG Q+V +  +DE ++ A+N    ++  ++  +  +L+   E+V   +QVVSG+KY +T+R+A + C+ DN + + +         DP + + YQ   TVW+RPW+ D
Sbjct:   18 GALAGGFQNVDM--NDEGVQNALN--FAVVEHNKATNDLYLSQVAEVVTAQRQVVSGMKYVITVRMAKTPCRKDNADNVCAIH------QDPLKAQPYQCTFTVWSRPWLND 119
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A673BNT2_9TELE (Cystatin-C-like n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673BNT2_9TELE)

HSP 1 Score: 57.0 bits (136), Expect = 4.820e-7
Identity = 36/111 (32.43%), Postives = 63/111 (56.76%), Query Frame = 2 
Query:  110 VNGLRLGGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFL--AVEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPW 430
            +  L  GG   V +  +D  ++ A+N    ++  +RG +  +L  A E+V+  +QVV+G+KY +T+++A +NC+ D  N++ +   N      PE  + YQ   TVW+RPW
Sbjct:   18 LGSLMPGGRMDVDV--NDPGVQNAVN--FAVVQHNRGTNDMYLHQAAEVVKAQRQVVAGMKYIITVKMAKTNCRKDRPNEVCAIHEN------PENAQPYQCEFTVWSRPW 118
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: A0A1L2CVX4_EPICO (Cystatin C n=2 Tax=Epinephelus TaxID=94231 RepID=A0A1L2CVX4_EPICO)

HSP 1 Score: 56.6 bits (135), Expect = 6.690e-7
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = 2 
Query:  101 VTVVNGLRL-GGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFLA--VEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQ--MTVWARPWMED 439
            + V +G +L GG Q V    D++  + AIN    ++  +R  +  +L+   E+V++ +QVV+G+KY +TL++A + C+  + N++ +   N      PE    YQ   TVW+RPW+ D
Sbjct:   13 IAVGSGSKLVGGFQDVDYTTDEDA-KNAIN--FSVVEHNRATNDLYLSQVAEVVKVQRQVVAGMKYVITLKMAKTPCRKGSANEVCAIHQN------PELARPYQCTFTVWSRPWLND 121
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: UPI0012EDB0DA (cystatin-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDB0DA)

HSP 1 Score: 55.1 bits (131), Expect = 2.480e-6
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 2 
Query:  104 TVVNGLRL-GGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFLA--VEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELY--QMTVWARPWMED 439
            TV +G  + GG +   L  +DE  R A+N    ++  +RG++  +L+   E+V+   QVV+G+KY +T+R+A + C+ D  N + +  ++E    DP + + Y    TVW+RPW+ D
Sbjct:   15 TVGSGASMVGGFRD--LDPNDEGARNALN--FAVVQHNRGSNDMYLSQVAEVVKAQSQVVAGLKYVITVRMAKTPCRKDGANDVCA--IHE----DPAQAQPYLCTFTVWSRPWLND 121
[Close]
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Match: UPI001C054E2D (cystatin C (amyloid angiopathy and cerebral hemorrhage) n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C054E2D)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-6
Identity = 35/106 (33.02%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:  128 GGIQSVPLADDDERIRTAINEGMHMLNQDRGASRAFL--AVEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLSSYFVNESCMADPEEEELYQMTVWARPWMED 439
            GG++   +  +DE ++ A+N      N  RG +  FL   VE+V    QVV+G+KY +T+++A +NC+ D +N        E+C     +      TVW+RPW+ D
Sbjct:   23 GGLRDADI--NDEGVQNAVNFAAAQHN--RGTNDMFLHQVVEVVRAQTQVVAGMKYVITVKMAKTNCRKDRDN--------ENCGVLSTQPYECTFTVWSRPWIND 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q1C159_AMPOC4.710e-832.14Cystatin-C-like n=3 Tax=Amphiprion TaxID=80969 Rep... [more]
UPI00189DD42D9.310e-831.75cystatin C (amyloid angiopathy and cerebral hemorr... [more]
A0A3B5AAK1_9TELE1.060e-732.06Cystatin-like n=1 Tax=Stegastes partitus TaxID=144... [more]
A0A484CJ19_PERFV1.270e-732.20Cystatin domain-containing protein n=3 Tax=Percida... [more]
A0A673BQN6_9TELE1.910e-733.33Cystatin-C-like n=2 Tax=Sphaeramia orbicularis Tax... [more]
UPI001CE05DEF4.620e-732.14cystatin C (amyloid angiopathy and cerebral hemorr... [more]
A0A673BNT2_9TELE4.820e-732.43Cystatin-C-like n=1 Tax=Sphaeramia orbicularis Tax... [more]
A0A1L2CVX4_EPICO6.690e-732.20Cystatin C n=2 Tax=Epinephelus TaxID=94231 RepID=A... [more]
UPI0012EDB0DA2.480e-633.33cystatin-like n=1 Tax=Anarrhichthys ocellatus TaxI... [more]
UPI001C054E2D3.100e-633.02cystatin C (amyloid angiopathy and cerebral hemorr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:1274665..1279667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog144197.XP_008281710.1
PFAMsCystatin
Model size632
Max annot lvl33208|Metazoa
KEGG koko:K13899
KEGG Pathwayko04970,map04970
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.23e-09
EggNOG OGs2CZYG@1|root,2SC50@2759|Eukaryota,3A7NG@33154|Opisthokonta,3BTB6@33208|Metazoa,3D98Q@33213|Bilateria,48RES@7711|Chordata,49N0M@7742|Vertebrata,4A4JF@7898|Actinopterygii
DescriptionCystatin-like
Cds size432
COG categoryO
BRITEko00000,ko00001,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.532913-UTR-H-akashiwo_Contig96:1274664..12747131681388059.532913-UTR-H-akashiwo_Contig96:1274664..1274713Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 1274665..1274713 +
1681388059.5692198-UTR-H-akashiwo_Contig96:1279516..12796671681388059.5692198-UTR-H-akashiwo_Contig96:1279516..1279667Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 1279517..1279667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.5434766-CDS-H-akashiwo_Contig96:1274713..12748751681388059.5434766-CDS-H-akashiwo_Contig96:1274713..1274875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1274714..1274875 +
1681388059.5521364-CDS-H-akashiwo_Contig96:1275092..12752931681388059.5521364-CDS-H-akashiwo_Contig96:1275092..1275293Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1275093..1275293 +
1681388059.5606174-CDS-H-akashiwo_Contig96:1279447..12795161681388059.5606174-CDS-H-akashiwo_Contig96:1279447..1279516Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1279448..1279516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.19.1prot_H-akashiwo_Contig96.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 1274714..1279516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.19.1

>prot_H-akashiwo_Contig96.19.1 ID=prot_H-akashiwo_Contig96.19.1|Name=mRNA_H-akashiwo_Contig96.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=144bp
MIFLVQRMKTLLLFLYFVTVVNGLRLGGIQSVPLADDDERIRTAINEGMH
MLNQDRGASRAFLAVEIVEINQQVVSGIKYDVTLRIAPSNCQFDNENKLS
SYFVNESCMADPEEEELYQMTVWARPWMEDQPYLLMAAAPAAP*
back to top

mRNA from alignment at H-akashiwo_Contig96:1274665..1279667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.19.1 ID=mRNA_H-akashiwo_Contig96.19.1|Name=mRNA_H-akashiwo_Contig96.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5003bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1274665..1279667+ (Heterosigma akashiwo CCMP452)
ACATACCATTGAATAAAGGCAGGCCAAGGCAGACCTCTCTGTACTGACCA
TGATATTCCTCGTGCAGAGAATGAAAACTCTGTTACTTTTTCTTTATTTC
GTTACAGTTGTAAATGGGCTTCGTCTTGGTGGCATTCAATCCGTCCCACT
TGCTGATGATGATGAGAGAATCAGGACCGCAATCAATGAAGGAATGCACA
TGCTCAACCAGGTGACCGAAATCTGTTTTTTTTATATATATATATGTTTC
AACTGACCCAGATTGTACAGCTGGCTTCCTTTGGGCAGATGGTATGCCAG
ACGAAGAGCATTCCAAAGAAAAATCAAGTCATGCCGATCCTCGTATCATA
CTCATACTTGGGTTGTAGAGCTTTTTTGTCATACATACTGCCCTGGTTTT
AATAAAAATGTTGTCCTTCATTTTTCAGGATCGAGGTGCAAGCCGGGCTT
TTTTGGCTGTGGAAATTGTTGAGATCAATCAACAAGTGGTTTCTGGAATA
AAGTATGATGTGACTCTACGTATCGCTCCTTCAAACTGCCAATTCGACAA
TGAAAACAAACTTTCCAGTTACTTTGTAAATGAATCTTGCATGGCTGATC
CAGAAGAGGAGGAGCTATATCAGATGACTGTGAGTGATTTGTTGGTTTGT
TTAGTGTGTGAGCAAAAACAATGATGGAAACATATATATAATGTATCCCA
CTCGTCGGGGGGACAATCACACTTTGCACAGGAAAAATTAGGGATTATTT
TTCTCACGAATCCCTGTTTTGGGGGGAATTATTGGAGGGGCTGCAAAAAA
AAATTTGCCGCCCTCGGTAGATATTTTGCAGCCCTCTTTTTGATTTTTGC
AGCCCTCCTTTTTAGTAATAATAAAAAATAATAATAACAATTAGGGGCCT
AGTAACCATCATTTTATGGCGAGCAGTTATTTTTACACAAAGAAGAAACT
AAAGCACAGTGGTGGCAAGAACTGGAACCAGAGTAACTCTAGCACACACT
TCCCGAGGGCCGGAGGCCCGAGGGAAGTGGTACAACGGGCAGAAGCTGAG
CTGCGACTAAACTGCAGCATGGCTTGGAACAAGTCACAGGAAAATGGAAA
AGTTCTGACGGCTTGGGCGGCGTCTGCGCGAGCACTGGCGGCCTGCAAAG
GGGAAAAGAAGCAGCCTGCGCCCGCGCGGGCCGGGGTGCGCTGGGCCAGA
CGAGGTGCCCGAGCAGGGACCGAAGCAGCGGCAGGAGTGTCAGTGCCTAA
ATATCCAGGGACAGAAGCAGCGGCAGAATATAAGGAGGTCAATTAGGTTG
TAATACAGATTGGCAGAATCGAAGAGGATGAAGTGGCATCCACAAGGAAA
AAAATGAGAACTGTCCTCCCATCTGACGATGTTTTCTTCTCCAACAATGT
AGAAAGCTTGATCACCAGCAGTAATTAATTCAGGATTGAGAGCCCCCTCG
AGGTGGATGCAGCACGTAATGTTGCTGGCAATATCAATGTCCTGGTTGAC
GGTGGAGGCGAGCTCACACATACGAAGGCCTCCCAAAAAAGGAGCGATGA
CCATGGCCTTCTGCTGCAGGCAGTCAACCGTTGGGAAACACTTGGCCTTC
TTGTTGACATCCTTCTTGGTCCAGTTGTTCAACAGCGTGTTTACCAACTC
ATTCTTGATCGGTGCGGTGTGTCAACGGTAGTCCAGACGAGCATTGATGT
CAGCAGCAATCGCCCACATTGTCTCCGAGCTATACTCATGCTGGTCTCGC
AGATGACGCAGAAAGGTGGCAAACTCATGGGGAGTGGGCGCATAGTTGGT
GTCATCCAGACCATTCGCCTTGCGCCATCCCATTCACTTATCTCAGTACC
GTTGCGATGTATGAGAAGGGTACCTAAACACCAGGCATTGACGGAAACTA
GGGAATAACGGACGGGGCAGCAGAAAGATTCGCATGTAGTGTGAGCAATC
TTGAAGCTCTGGGTCGACGTCGCCACCTGCTTGGAGGCCACCGAATCCAG
AAGCCCTCTCTCGTAGACTTGGCGTCATGATTTGTAGTTGGAATCCAAGT
GAAGCTAATGTCTTGATTAGGTGGAAATGGGTAAACAAATATATGGTGGT
TGCGTCGTCGTCGTCGTGCTTGTCTGTATAGCAGGGGGAAGCTCCTCGCC
ATCATAGGAAAATGTAAACGGATATAGAAGGGACAGAGAGGTAACAACAA
GCAGAACTCCTCAAAACTCAAACTCAACCTTCACGCTGTGAGTGTAACTA
GAATTTTGTAAAGTTCTTCATTTAAACTTTGTCCATTATTATTATGAATT
CTGAGGGGAAAAGGAGGAGAAAAAGCTAAATCGCACACCCCTAAAACATT
AATGGATTTTTTTGCGGAATTTCCATCAATTTCATCGTAATAACTCAAAT
AATTTGGTTATTCCAAAAATTCCAAACATCCAACCGTTGTTTCGGAATTC
TACAAAAAGTATAGGGTGTTTATAAATCTCTATTTGAAAGCGAAGTACTA
TTGTATCTTCTAACAAAAATCGAACTAACCTACTAGACAAGAAACAGAGG
GAAAACTGATCGCTTTGAACAAGAACGTTTGTATTGAAGAGAAAAAAGGA
GTATTCAGAACGCACTGTCCACTAAGCTGACCCCTTGTAGAGCTCTTGCA
CAACCCGAGGACGATGAAATTTCAATTTTATCCATTAAACCTGCTGGTGA
CCAAAAAATCTATTTGTGACTGGTAACATTAGCTTATTTCCCTTTTAGCA
AAATCCATAAAACCAACAGCCCGCTAAAATTTTTGGTGTCCTCAAAAAGA
CCATTATTACTATTTTTTATCAAATAAGATATAATAAGAAACCCCACACT
TCAGTGAGACCCTGCGGACCTCAGGAACCCATCCCTCGGGCCTGAGGGTC
CTTGGGTAACTGAAACCCTTTAGTGGCCGTCACGATAAAGGGGGCAGCGC
TTCATGGGAAGTACGGCAGATTTCGCCAGATTTTGCGCGCCCAGGCTCGA
ACCCGGACCTGACGTAAAAAAAAGCAAGATACGCGCCCTCCAGAACAGGA
CGAACTATGATGAAGTCTTACCTCTCATTCTGCGCTATTCTAGTATTCTT
TGGAATGATGATGCTGGGAGTCCACGGAAACCGGCCTGAGGCTAGGTTTG
GAGAGAAGCCGAAGGATATGAGCTCGCCTTAGCCGTACGGCCAGTTATCC
ATGTACGATTGCGAAGATTCAAAAGATATGACCTTCGATTAACAAAATTT
AAACTGCCTACTAAAAAGCTATACAACTCAAAAACTAAAATGGCGCCGTC
CGTGGTCAATAGCTCAAAATTCTCGGAGGATTCCTCTGCGCATTTTGAGC
TATTTATCACGAACGGCGTCATTGTAGAACACGATTTGTATTTTCGGTGA
ATTTCGTTGCAAAATACCCCCCTTTATCGTGACGGCCACTCTTTCACCCT
GCGGAAGTGGTGCAGTGTCATTCTCTTAAAATCAAGGAGGACGAAAATTT
CATGCCAAATCTTGCCGCCCCAAAATGAGATAAAAGGCCAAAAACGCGTG
ACCCTTAAAGGGTTGAGCGTTTTTCGGAAAATCAGGGATACAAGAGGTTT
TTATTGGCTTCTACAGTAGTCGGTCGGTTTCATAGGAGGTCAAATGGTTG
TCTCCCTCGTGGGATACAGCCATGTAACGCTACTACGAGCCCGTGAGGTG
TTGTCGGTCTCGAAGCGTCAATCAACCCGCACATTTCTCTCTGGCTAACG
TCCTCCAGTAATGTGCGGGTTGATTCACGTTTCTCGCCCGACAACGGCTC
TAGTGCGTTATATAGCTAATACACACACATACAACGGAATATTTTGATGG
ATGAAGAAAAGTGAGAGAAATGAATGCTCACGCTTGTCAGCCATAAAATT
TTCCCATCAGCATGCACGTGTTGGCCATCACTTACAGCCAATTCAGGAGG
AGGCGGTCCACTTGATTTGGTGGGGAAATACAAAAAAAAAACTGAAGGCA
CCTCTCTGTTTGCTCAGTATCCAAGTCGGCTCAGTATCCAAGGCTAACCG
CCGATGCCAGGGTCAATTTTTTTAATCATGATTTTAAATGGAGAGGAGGA
AGAAGAAAATGCTGCTCTCTCGTGCGACATACCTACATACCTACATATAT
ATTATGATCAGTCACCTCAAGGTCCTGAGAGGACCAGAGAGGTGAATCTT
ACAAATATATGAAGCATATTATATACTGAGCCCGTTCCACAACAGTAATC
ATTGCGAGACACACCTCCATACAGGCAACAGAAGGCTTTCAGTGGTGAGA
ACATAGAACACCACTGCGCTCATGCTGGGGCCTATCCAATGATGAAAAAG
ATCAAGTTTTTCATTGTCACTCCTTTGCTTTAATTTGCATTTGCATGCCA
GGCTGACTTCAGATGAATTAATTATTATATGATAATTGATAGGAGTCGTT
TTTTATCATTCTCTTCATTTTGAGAGAAGCTCGGTTATAGGGGTCACACA
CTACGTATGTATCACCCCACATGCACTATCAATGTCACACTTTCTACTAG
TTTGATTTCGATTGCCTTCGACGGATCTCTCTGTGATAGGTGGCGAAATC
CTTGATGTCGTTCTTAGGTGTTCATCCGATCTGAGTTTAATGCATCATTT
CGTGACCTAGACTTCGGCACTCTACGTTGAAGTTGAATATAATAATTCAT
TATGTACTCTGCTGTGCCATGTTGGAATAGTGACTGTTCTTCGTTAGGGT
GAGATGTGTATTTTTCCTCATCTGTTGCACCAGGTTTGGGCACGGCCTTG
GATGGAAGATCAGCCTTATCTCTTGATGGCAGCTGCTCCTGCTGCTCCAT
AGTGAAGGCTCTTGATTGAAACTGTAAATAAGGACGAGTCTGTACTTGTG
TTGCATATCTATCATATATATACATTGTCGGTTGAAGGGAGACTGCTTTG
CATATATGAATACAATAGAGCATGTAGGGTTAAGGATAGCTGGAACTTCG
GTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig96:1274665..1279667+

>mRNA_H-akashiwo_Contig96.19.1 ID=mRNA_H-akashiwo_Contig96.19.1|Name=mRNA_H-akashiwo_Contig96.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1274665..1279667+ (Heterosigma akashiwo CCMP452)
ATGATATTCCTCGTGCAGAGAATGAAAACTCTGTTACTTTTTCTTTATTT
CGTTACAGTTGTAAATGGGCTTCGTCTTGGTGGCATTCAATCCGTCCCAC
TTGCTGATGATGATGAGAGAATCAGGACCGCAATCAATGAAGGAATGCAC
ATGCTCAACCAGGATCGAGGTGCAAGCCGGGCTTTTTTGGCTGTGGAAAT
TGTTGAGATCAATCAACAAGTGGTTTCTGGAATAAAGTATGATGTGACTC
TACGTATCGCTCCTTCAAACTGCCAATTCGACAATGAAAACAAACTTTCC
AGTTACTTTGTAAATGAATCTTGCATGGCTGATCCAGAAGAGGAGGAGCT
ATATCAGATGACTGTTTGGGCACGGCCTTGGATGGAAGATCAGCCTTATC
TCTTGATGGCAGCTGCTCCTGCTGCTCCATAG
back to top