mRNA_H-akashiwo_Contig959.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig959.7.1
Unique NamemRNA_H-akashiwo_Contig959.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig959.7.1 vs. uniprot
Match: A0A7S4DJ45_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ45_HETAK)

HSP 1 Score: 223 bits (567), Expect = 2.160e-71
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 KVRSLLLFLLIMMALENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPLV 330
            KVRSLLLFLLIMM LENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPL 
Sbjct:   23 KVRSLLLFLLIMMVLENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPLA 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig959.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DJ45_HETAK2.160e-7198.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig959contigH-akashiwo_Contig959:323163..323695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categorysignal peptide
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.9409194-CDS-H-akashiwo_Contig959:323162..3234061681388058.9409194-CDS-H-akashiwo_Contig959:323162..323406Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig959 323163..323406 +
1681388058.9507246-CDS-H-akashiwo_Contig959:323607..3236931681388058.9507246-CDS-H-akashiwo_Contig959:323607..323693Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig959 323608..323693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig959.7.1prot_H-akashiwo_Contig959.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig959 323163..323693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig959.7.1

>prot_H-akashiwo_Contig959.7.1 ID=prot_H-akashiwo_Contig959.7.1|Name=mRNA_H-akashiwo_Contig959.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp
KVRSLLLFLLIMMALENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHR
PGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQA
NLSLGYQPLV
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mRNA from alignment at H-akashiwo_Contig959:323163..323695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig959.7.1 ID=mRNA_H-akashiwo_Contig959.7.1|Name=mRNA_H-akashiwo_Contig959.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=533bp|location=Sequence derived from alignment at H-akashiwo_Contig959:323163..323695+ (Heterosigma akashiwo CCMP452)
AAAGTCCGCTCGCTTCTGCTGTTTCTCTTGATCATGATGGCCTTGGAAAA
TGTAGACATGCATCAACCAAGAACGAGCGATAGAAGCCACCCCACAGATG
ATGAGATCATGAAAGTTGCTGCAGCTACATGGGCAGTGTATGAACATCGA
CCGGGATTGCAGTATCTTGATATTGGAAATGACACAATGGAAATAATAGG
CATAAGACAATACGGCCCCAGCAAATGCCTCATAGCATCATCAGGTATAC
AGACAAAAGAACATGAATCGCAATCATACATATATAGTAGAAAAAGTACC
AGCTCACTGGAGAATACTCTCTGATTTTTTTTTCTTTTTGTTGTACAGAA
AAAACTCCTGGTCATACATATTCATCATGTATCTAGGTTTTCGACACCCT
GTCCCTCCTCCTCCACACTTACCAAAAAAATAATCATGTCATCAGGCGGG
AAGCTGTACATCGCGCTGAGGGGCAGCCAGACCTGGGAGGACTGGCAGGC
CAACCTCTCGCTGGGCTACCAGCCACTGGTCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig959:323163..323695+

>mRNA_H-akashiwo_Contig959.7.1 ID=mRNA_H-akashiwo_Contig959.7.1|Name=mRNA_H-akashiwo_Contig959.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig959:323163..323695+ (Heterosigma akashiwo CCMP452)
AAAGTCCGCTCGCTTCTGCTGTTTCTCTTGATCATGATGGCCTTGGAAAA
TGTAGACATGCATCAACCAAGAACGAGCGATAGAAGCCACCCCACAGATG
ATGAGATCATGAAAGTTGCTGCAGCTACATGGGCAGTGTATGAACATCGA
CCGGGATTGCAGTATCTTGATATTGGAAATGACACAATGGAAATAATAGG
CATAAGACAATACGGCCCCAGCAAATGCCTCATAGCATCATCAGGCGGGA
AGCTGTACATCGCGCTGAGGGGCAGCCAGACCTGGGAGGACTGGCAGGCC
AACCTCTCGCTGGGCTACCAGCCACTGGTC
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