mRNA_H-akashiwo_Contig959.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig959.10.1
Unique NamemRNA_H-akashiwo_Contig959.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig959.10.1 vs. uniprot
Match: A0A6V1NW93_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NW93_HETAK)

HSP 1 Score: 188 bits (477), Expect = 1.730e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 2 
Query:   38 MIAPQEVIDAVIKDVAQLNVDDGLEEAVEACKERCAMQLKYIKPADWDRYTSAQQPWREEERRVVEEFLIRHRPAQMSNIALYTKIAALLPRKSAR 325
            MIAPQEVIDAVIKDVAQLNVDDGLEEAVEACKERCAMQLKYIKPADWDRYTSAQQPWREEERRVVEEFLIRHRPAQMSNIALYTKIAALLPRKSAR
Sbjct:    1 MIAPQEVIDAVIKDVAQLNVDDGLEEAVEACKERCAMQLKYIKPADWDRYTSAQQPWREEERRVVEEFLIRHRPAQMSNIALYTKIAALLPRKSAR 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig959.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1NW93_HETAK1.730e-55100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig959contigH-akashiwo_Contig959:328729..329158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size326
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.980017-CDS-H-akashiwo_Contig959:328728..3289561681388058.980017-CDS-H-akashiwo_Contig959:328728..328956Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig959 328729..328956 -
1681388058.9948034-CDS-H-akashiwo_Contig959:329061..3291211681388058.9948034-CDS-H-akashiwo_Contig959:329061..329121Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig959 329062..329121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.0046337-UTR-H-akashiwo_Contig959:329121..3291581681388059.0046337-UTR-H-akashiwo_Contig959:329121..329158Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig959 329122..329158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig959.10.1prot_H-akashiwo_Contig959.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig959 328729..329121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig959.10.1

>prot_H-akashiwo_Contig959.10.1 ID=prot_H-akashiwo_Contig959.10.1|Name=mRNA_H-akashiwo_Contig959.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp
MIAPQEVIDAVIKDVAQLNVDDGLEEAVEACKERCAMQLKYIKPADWDRY
TSAQQPWREEERRVVEEFLIRHRPAQMSNIALYTKIAALLPRKSAR
back to top

mRNA from alignment at H-akashiwo_Contig959:328729..329158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig959.10.1 ID=mRNA_H-akashiwo_Contig959.10.1|Name=mRNA_H-akashiwo_Contig959.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=430bp|location=Sequence derived from alignment at H-akashiwo_Contig959:328729..329158- (Heterosigma akashiwo CCMP452)
CTGATTTGAAGTCTGGTGGCGATATAGCGCTACCAAAATGATAGCTCCTC
AAGAAGTCATTGATGCTGTGATCAAAGATGTGGCTCAGCTAAATGTGGTA
GGTTAAAAAAAAAACGATACTTTTTTAATGGTGCCTTCGTTCCATAGGTC
ATGGCTTTTAAAACGAGAAGCAATTCTATTGGTGTTTTACTTTGCAATAT
AGGACGATGGACTTGAAGAAGCTGTTGAAGCGTGCAAAGAGCGTTGTGCC
ATGCAATTAAAATATATTAAGCCAGCGGATTGGGACCGCTATACATCCGC
ACAACAGCCCTGGCGGGAAGAAGAGCGAAGGGTTGTGGAGGAGTTTCTCA
TTCGTCACAGACCGGCACAAATGAGCAACATTGCTTTATACACAAAAATC
GCTGCCTTGCTTCCCCGCAAGAGTGCAAGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig959:328729..329158-

>mRNA_H-akashiwo_Contig959.10.1 ID=mRNA_H-akashiwo_Contig959.10.1|Name=mRNA_H-akashiwo_Contig959.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig959:328729..329158- (Heterosigma akashiwo CCMP452)
ATGATAGCTCCTCAAGAAGTCATTGATGCTGTGATCAAAGATGTGGCTCA
GCTAAATGTGGACGATGGACTTGAAGAAGCTGTTGAAGCGTGCAAAGAGC
GTTGTGCCATGCAATTAAAATATATTAAGCCAGCGGATTGGGACCGCTAT
ACATCCGCACAACAGCCCTGGCGGGAAGAAGAGCGAAGGGTTGTGGAGGA
GTTTCTCATTCGTCACAGACCGGCACAAATGAGCAACATTGCTTTATACA
CAAAAATCGCTGCCTTGCTTCCCCGCAAGAGTGCAAGG
back to top