mRNA_H-akashiwo_Contig958.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig958.7.1
Unique NamemRNA_H-akashiwo_Contig958.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig958.7.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 47.8 bits (112), Expect = 7.140e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   25 ALGTLFKKDKEEIRELDSDEYLEALQEWVPLAKFAAEE 138
            ALGTLFK + EEIREL SDE+L+ ++ W P++ F   E
Sbjct:   68 ALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNE 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig958.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0G4F895_VITBC7.140e-555.26Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig958contigH-akashiwo_Contig958:348266..348776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.7371714-CDS-H-akashiwo_Contig958:348265..3483281681388058.7371714-CDS-H-akashiwo_Contig958:348265..348328Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 348266..348328 -
1681388058.7469223-CDS-H-akashiwo_Contig958:348559..3485961681388058.7469223-CDS-H-akashiwo_Contig958:348559..348596Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 348560..348596 -
1681388058.7581315-CDS-H-akashiwo_Contig958:348711..3487761681388058.7581315-CDS-H-akashiwo_Contig958:348711..348776Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 348712..348776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig958.7.1prot_H-akashiwo_Contig958.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig958 348266..348776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig958.7.1

>prot_H-akashiwo_Contig958.7.1 ID=prot_H-akashiwo_Contig958.7.1|Name=mRNA_H-akashiwo_Contig958.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
PSLKKPKPALGTLFKKDKEEIRELDSDEYLEALQEWVPLAKFAAEEVADP
SVDQ*
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mRNA from alignment at H-akashiwo_Contig958:348266..348776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig958.7.1 ID=mRNA_H-akashiwo_Contig958.7.1|Name=mRNA_H-akashiwo_Contig958.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=511bp|location=Sequence derived from alignment at H-akashiwo_Contig958:348266..348776- (Heterosigma akashiwo CCMP452)
CCATCATTAAAAAAACCGAAACCTGCGCTTGGAACGTTGTTTAAAAAAGA
CAAAGAGGAAATCAGGTTCTATTCTCATCAGGGAAAGTTTGAATGTAAAT
ATTTTCTCATGCACTAACCAATAAAGTAAAAAGATGTAGTGATGGTAAAA
CGCCACGAATTGCTGTTTTTTAATTACCAGGGAGTTAGATAGTGATGAAT
ACCTTGAGGCTTTGCAGGTATCTGTAGAGATATCAGAGCTGGGAGTTCTT
CTGATGAGGAGCTTAAATAGACACTCATTTTTTTTTTTTTGGTATTATTA
ATTAGACCCCAATTGTTGTGGAAACACCTTGTATGTTGCAGAACAACCCA
GCTCCGTAACCTTTGGACAACTCTTACGGGCATAATTAATCAATATCATA
GTTGTTTGAACACTGCAAAACATCAATGTATGCTGAATACTGCCATAGGA
GTGGGTCCCGTTGGCCAAGTTTGCTGCTGAGGAGGTGGCAGACCCCTCCG
TTGATCAGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig958:348266..348776-

>mRNA_H-akashiwo_Contig958.7.1 ID=mRNA_H-akashiwo_Contig958.7.1|Name=mRNA_H-akashiwo_Contig958.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig958:348266..348776- (Heterosigma akashiwo CCMP452)
CCATCATTAAAAAAACCGAAACCTGCGCTTGGAACGTTGTTTAAAAAAGA
CAAAGAGGAAATCAGGGAGTTAGATAGTGATGAATACCTTGAGGCTTTGC
AGGAGTGGGTCCCGTTGGCCAAGTTTGCTGCTGAGGAGGTGGCAGACCCC
TCCGTTGATCAGTAA
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