mRNA_H-akashiwo_Contig958.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig958.4.1
Unique NamemRNA_H-akashiwo_Contig958.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: UPI001BD4154C (ribonuclease H2 subunit C n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD4154C)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 MTKENSIIGVQRVEQT--TPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPES 303
            M+  +S+  VQ V      P V +  +PC+I HDGPA++ +YF              A ++D   +++    SFRGR LKG ++S P G  G+V KE+  P S
Sbjct:    1 MSSNSSVTHVQIVSSAGQAPRVPVHLMPCEIEHDGPAQVSQYFT-------------ATTKDGKQEKSV---SFRGRGLKGQELSCPQGYTGLVLKETNKPGS 87          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A317UYW4_9EURO (Ribonuclease H2 subunit C n=3 Tax=Aspergillus TaxID=5052 RepID=A0A317UYW4_9EURO)

HSP 1 Score: 60.8 bits (146), Expect = 2.170e-9
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   49 TPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276
            TPN+L    PC+IHHDGP E +++Y+ P    PDEK         +N QQTA+   FRGRRL+G  +++P+G  GV+
Sbjct:   22 TPNIL----PCRIHHDGPVESLNRYWTP---LPDEK---------DNNQQTAY---FRGRRLRGRRVAIPEGYEGVI 79          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1L9VW70_ASPGL (Uncharacterized protein n=1 Tax=Aspergillus glaucus CBS 516.65 TaxID=1160497 RepID=A0A1L9VW70_ASPGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.460e-9
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276
            E  TPN+L    PC+IHHDGP + + +Y+ P            A +EDEN Q    IS FRGR+L+G  +++PDG  GVV
Sbjct:   21 ECCTPNIL----PCRIHHDGPVDSLQRYWAPA-----------ADNEDENLQ----ISHFRGRKLRGRRVAIPDGYQGVV 81          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: UPI001561416B (ribonuclease H2 subunit C isoform X1 n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI001561416B)

HSP 1 Score: 59.7 bits (143), Expect = 5.300e-9
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   73 LPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPESQ 306
            LPC+I HDGPA + +YF P            A+ E ++      I+SFRGR LKG ++S+P G  G+V KE   P S+
Sbjct:   43 LPCEIEHDGPASVGRYFSP------------AVKETKSEM----IASFRGRGLKGQEVSVPQGYSGMVLKEDHKPVSE 104          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A2R5GUU5_9STRA (Ribonuclease H2 subunit C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUU5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.170e-9
Identity = 30/87 (34.48%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   25 GVQRVEQTTPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKE 285
            G++  ++    V + HLPCKIHHDG A+++ YF P E   D+K     I +++        ++FRGR+L G +++LP+   G V ++
Sbjct:    9 GLESAQRGLRPVQVMHLPCKIHHDGAADVEAYFRPTE--TDKKSG--TIVDEKGDMAQIREATFRGRKLLGAELTLPEKTQGFVLEK 91          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1S9RBX0_PENBI (Ribonuclease H2 subunit C n=2 Tax=Penicillium brasilianum TaxID=104259 RepID=A0A1S9RBX0_PENBI)

HSP 1 Score: 59.7 bits (143), Expect = 6.680e-9
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   13 NSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWK--ESIIPESQ 306
            +S+   +   + TPNVL    PC+IHHDGP E  +++++P  +  D+KQ             T+H   FRGRRL+G  +++P+G  GV+    + ++P SQ
Sbjct:   15 SSLASDEETTKFTPNVL----PCRIHHDGPIESTNRFWIPQTDEKDDKQ-------------TSH---FRGRRLRGRRVAIPEGYQGVIATPTDRVLPASQ 95          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: Q0CHU1_ASPTN (RNA exonuclease 4 n=1 Tax=Aspergillus terreus (strain NIH 2624 / FGSC A1156) TaxID=341663 RepID=Q0CHU1_ASPTN)

HSP 1 Score: 61.2 bits (147), Expect = 9.100e-9
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV--WKESIIP 297
            ++ TPN+L    PC++HHDGP   +D++++P    PDEK         + A QTAH   FRGR+L+G  +++P+G  GVV    E +IP
Sbjct:  373 DKCTPNIL----PCRVHHDGPVNSVDRFWIP---VPDEK---------DKALQTAH---FRGRKLRGRHVAVPEGYQGVVAALTERVIP 442          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1E3B4D7_9EURO (Uncharacterized protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A1E3B4D7_9EURO)

HSP 1 Score: 58.9 bits (141), Expect = 1.340e-8
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276
            E  TPN+L    PC+IHHDGP E + +Y+ P  ++ DEK             QT+H   FRGR+L+G  +++P+G  GVV
Sbjct:   21 ESCTPNIL----PCRIHHDGPVESLQRYWAPEADNEDEKL------------QTSH---FRGRKLRGRRVAIPEGYQGVV 81          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1Q5UQX5_9EURO (Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5UQX5_9EURO)

HSP 1 Score: 60.1 bits (144), Expect = 2.260e-8
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   13 NSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWK--ESIIPESQ 306
            +S++  +   + TPN+L    PC+IHHDGP E  +++++P  +  D KQ             TAH   FRGRRL+G  +++P+G  GV+    + ++P SQ
Sbjct:   15 SSLVSDEAPTKFTPNIL----PCRIHHDGPIESTNRFWIPQTDEKDNKQ-------------TAH---FRGRRLRGRRVAIPEGYQGVIATPTDRVLPASQ 95          
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: W5K0X1_ASTMX (Ribonuclease H2 subunit C n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K0X1_ASTMX)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8
Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 1
Query:   73 LPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPES 303
            LPC+I HDGPAEI ++F P             + E    Q+     SFRGR LKG ++S P G  G+V KE   P S
Sbjct:   26 LPCEIEHDGPAEISRFFTP------------TVKE----QKCEKTVSFRGRGLKGQEVSCPQGYTGLVLKEVQRPSS 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BD4154C1.390e-934.95ribonuclease H2 subunit C n=1 Tax=Cheilinus undula... [more]
A0A317UYW4_9EURO2.170e-945.45Ribonuclease H2 subunit C n=3 Tax=Aspergillus TaxI... [more]
A0A1L9VW70_ASPGL2.460e-943.75Uncharacterized protein n=1 Tax=Aspergillus glaucu... [more]
UPI001561416B5.300e-941.03ribonuclease H2 subunit C isoform X1 n=4 Tax=Acipe... [more]
A0A2R5GUU5_9STRA6.170e-934.48Ribonuclease H2 subunit C n=1 Tax=Hondaea fermenta... [more]
A0A1S9RBX0_PENBI6.680e-934.65Ribonuclease H2 subunit C n=2 Tax=Penicillium bras... [more]
Q0CHU1_ASPTN9.100e-940.45RNA exonuclease 4 n=1 Tax=Aspergillus terreus (str... [more]
A0A1E3B4D7_9EURO1.340e-841.25Uncharacterized protein n=2 Tax=Aspergillus TaxID=... [more]
A0A1Q5UQX5_9EURO2.260e-834.65Acyl-coenzyme A:6-aminopenicillanic-acid-acyltrans... [more]
W5K0X1_ASTMX2.910e-841.56Ribonuclease H2 subunit C n=2 Tax=Astyanax mexican... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig958contigH-akashiwo_Contig958:283078..284229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog33178.CADATEAP00008202
Preferred nameREX4
PFAMsRNase_T
Model size307
Max annot lvl4751|Fungi
KEGG koko:K18327
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:1901360
Exons2
Evalue1.49e-09
EggNOG OGsCOG0847@1|root,KOG2249@2759|Eukaryota,3A1XU@33154|Opisthokonta,3NYIT@4751|Fungi,3QS54@4890|Ascomycota,20F16@147545|Eurotiomycetes,3S7BN@5042|Eurotiales
Descriptionexonuclease
Cds size306
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.5816653-CDS-H-akashiwo_Contig958:283077..2831491681388058.5816653-CDS-H-akashiwo_Contig958:283077..283149Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 283078..283149 -
1681388058.5933423-CDS-H-akashiwo_Contig958:283995..2842291681388058.5933423-CDS-H-akashiwo_Contig958:283995..284229Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 283996..284229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig958.4.1prot_H-akashiwo_Contig958.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig958 283078..284229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig958.4.1

>prot_H-akashiwo_Contig958.4.1 ID=prot_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
MTKENSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDE
KQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPE
SQ
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mRNA from alignment at H-akashiwo_Contig958:283078..284229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig958.4.1 ID=mRNA_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-akashiwo_Contig958:283078..284229- (Heterosigma akashiwo CCMP452)
ATGACAAAGGAAAACTCCATTATTGGGGTGCAGAGAGTTGAGCAGACAAC CCCAAATGTTTTGATACAACACCTTCCTTGCAAAATTCACCATGATGGCC CTGCAGAGATTGACAAATATTTCCTTCCAGGCGAAGAATCCCCAGATGAA AAGCAACACCACCAAGCCATTAGTGAAGATGAAAACGCACAACAAACTGC ACATATATCCAGCTTTCGAGGTCGAAGATTAAAGGTATTTTTTTCTTTTA AAAAAGGTAGGACCTGATTAGTGTAGTAAAGTTGACGACATTGTTGTTTA GTCAAATTACTAGAAAAAAGTACCTATATATCAACTGGCAAAAAAGAAGA GGAATAGAAAACAACAGCAGCAAGCAGCAACAACAATGTTTTTAGCAAGC AAAGCACCATCATTACATTGTAGGACTTTGTAAGAAAGGTCAAGCCAAAA AAACTGAAGATCAGGCACTGGCCTTGGCTGGTGCTGGCTTGGTGGTATTA GCCGAAACCATGGTCTTTTGCAGTGATGGCCTGGTATTAAATACTGTAGG GTATAGCTGTTTTTCAAAGAACTTTCTACAATTCTAACAACCTCCTCCTG TTTCATTGATGTTGGTGTGATGATTACTTGATCCAGGGCTGGATGTGTCC CTTCCGTTAAGACCTTAGTAATTTATATTGAGTCATGTAGAACAGCACAA TAATATGTACGTACTATACTTGATGATGATCATATCAGAGACGAACCCGA TGATATCATATTCAAAAACAATCAATCCCTCGGAAATAATTACTAATGAT CCTCTACTCTGGACATACGTGTTGTCTTGACCTGAAAATAACCAAAAAAA AGTTGTCCAAGCAATGCATAACACTACTCTACCATGTAAACCAGTATATA TATATATTTTTCTCCGTTCAGATATTGTCTGATAATATATAATAAGCAGG AATAATACTCTCTCTCACACAGCAATAATGATGTTTGTTTGCTGTGAGGG ACAAATATACCCCGCACCAGGAATCACCTGGACCATCAGCACTTACTGTC ACACTGCTTTGCATTTGACCCCCCCCTCAGGGGACTGATATCAGCCTGCC AGATGGTGTTGTTGGTGTTGTGTGGAAAGAATCAATAATTCCTGAATCAC AG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig958:283078..284229-

>mRNA_H-akashiwo_Contig958.4.1 ID=mRNA_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig958:283078..284229- (Heterosigma akashiwo CCMP452)
ATGACAAAGGAAAACTCCATTATTGGGGTGCAGAGAGTTGAGCAGACAAC
CCCAAATGTTTTGATACAACACCTTCCTTGCAAAATTCACCATGATGGCC
CTGCAGAGATTGACAAATATTTCCTTCCAGGCGAAGAATCCCCAGATGAA
AAGCAACACCACCAAGCCATTAGTGAAGATGAAAACGCACAACAAACTGC
ACATATATCCAGCTTTCGAGGTCGAAGATTAAAGGGGACTGATATCAGCC
TGCCAGATGGTGTTGTTGGTGTTGTGTGGAAAGAATCAATAATTCCTGAA
TCACAG
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