mRNA_H-akashiwo_Contig957.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig957.8.1
Unique NamemRNA_H-akashiwo_Contig957.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A6V1V4J2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V4J2_HETAK)

HSP 1 Score: 268 bits (684), Expect = 4.890e-87
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMERKERG 417
            ALYPSIPVKKALEVVR KLEEDETL ERTPWSP QIVELLEICLETHFKTIDGRIFTQSDGT IGKSISGPI GIYLNWFEEQFIY+DRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMER++ G
Sbjct:  144 ALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLEICLETHFKTIDGRIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNG 282          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A7S3XWS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWS7_HETAK)

HSP 1 Score: 196 bits (497), Expect = 2.100e-62
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 1
Query:   34 LEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +E+VR KLEE+ETLS+RTPWSP QI+EL EICLETHFKTI GRIF+Q  GT IGKSISGPI GIYLNWF+E+FIY++RCK+KPTLW RMR     IWDHGEEKLQELL HVN QE+R+QFT+E
Sbjct:    1 MEIVRQKLEEEETLSQRTPWSPAQIIELWEICLETHFKTIYGRIFSQPGGTPIGKSISGPIAGIYLNWFDEEFIYSERCKNKPTLWKRMRG----IWDHGEEKLQELLGHVNEQEERVQFTIE 119          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A7S4DDA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA1_HETAK)

HSP 1 Score: 127 bits (319), Expect = 1.820e-31
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    4 LYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRC---KHKPTLWVRMRDDVFIIWDHGEEKLQELLS-HVNGQEKRIQFTME 402
            +YPSIP + ALEV+  KL++D TL +RT   P QI+ LL +C+ETHFK IDG I+TQ+DG  IGKSISG I GIY+  +EE+ +  ++    K +P  W R +DDV ++W  G E+       ++N +E+RIQ++ E
Sbjct:  209 MYPSIPREAALEVIYRKLQKDRTLKDRTDLKPRQIITLLRVCMETHFKDIDGDIWTQTDGCPIGKSISGVIAGIYMADYEERHVLNNKQLPPKWRPKFWKRQKDDVIVVWPSGAEEFDNFRKEYLNTREERIQWSGE 345          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A2J7QJN5_9NEOP (Reverse transcriptase domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QJN5_9NEOP)

HSP 1 Score: 116 bits (290), Expect = 1.760e-27
Identity = 57/134 (42.54%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +L+ ++PV +AL+V+R +L  D TL+ER+    E I+ELL++CL T +   D   + Q DG ++G S+S  ++ IY+  FE+  I  D  + KP+LW+R  DD F+IW HG E +Q  L+H+N     IQFTME
Sbjct:  258 SLFTNVPVDEALQVIRSRLSNDNTLAERSVLKVEAIMELLDVCLRTTYFQGDDGFYQQKDGMAMGSSLSPVVSNIYMEHFEQLAI--DSAQDKPSLWLRYVDDTFVIWPHGAEGIQNFLTHLNSLRPAIQFTME 389          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: UPI001E274E29 (uncharacterized protein LOC123683035 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E274E29)

HSP 1 Score: 106 bits (265), Expect = 1.980e-24
Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +L+ ++P  + LE+VR KLEED+TL+ERT  S   I+++L +C++T +  +D   + Q  G ++G  +S  +  IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N  E+ I+FTME
Sbjct:   30 SLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSIHAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETIAGFLEHLNNIEESIKFTME 161          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: UPI001E277682 (uncharacterized protein LOC123678684 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E277682)

HSP 1 Score: 106 bits (265), Expect = 4.370e-24
Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +L+ ++P  + LE+VR KLEED+TL+ERT  S   I+++L +C++T +  +D   + Q  G ++G  +S  +  IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N  E+ I+FTME
Sbjct:  298 SLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSINAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETIAGFLEHLNNIEESIKFTME 429          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: UPI001E276C2B (uncharacterized protein LOC123672141 n=2 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276C2B)

HSP 1 Score: 106 bits (265), Expect = 4.440e-24
Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +L+ ++P  + LE+VR KLEED+TL+ERT  S   I+++L +C++T +  +D   + Q  G ++G  +S  +  IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N  E+ I+FTME
Sbjct:  327 SLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSINAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETITGFLEHLNNIEESIKFTME 458          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: UPI001455459E (uncharacterized protein LOC117300272 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455459E)

HSP 1 Score: 102 bits (253), Expect = 4.580e-23
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLE-THFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            +L+ ++P  +A ++ +  LE+DETL++RT  +P+QI +LL  C++ T+F+  DG  + Q+  T +G  IS  +  I++  FE++ + T R K  P LW+R  DD FIIW HG E   + LSH+N Q   IQFTME
Sbjct:  103 SLFTNVPTDEACQITKAVLEQDETLTDRTSLTPDQIHDLLMTCVKSTYFQWRDG-YYRQALRTPMGSPISPVLANIFMEDFEQKALGTARLK--PKLWLRYVDDTFIIWSHGLENHDDFLSHINRQHPNIQFTME 234          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A2J7PER2_9NEOP (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PER2_9NEOP)

HSP 1 Score: 100 bits (248), Expect = 7.880e-23
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEE 339
            +L+ ++PV +AL+V+R +L  D TL+ER+    E I+ELL++CL T +  +D   + Q DG ++G S+S  ++ IY+  FE+  I  D  + KP+LW+R  DD F+IW HG E
Sbjct:  179 SLFTNVPVDEALQVIRSRLSNDNTLAERSVLKVEAIMELLDVCLRTTYFQMDDGFYQQKDGMAMGSSLSPVVSNIYMEHFEQLAI--DSAQDKPSLWLRYVDDTFVIWPHGAE 289          
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Match: A0A1B6H2E9_9HEMI (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6H2E9_9HEMI)

HSP 1 Score: 97.4 bits (241), Expect = 8.690e-23
Identity = 45/130 (34.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   13 SIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKTIDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 402
            ++PV + L+++  +L+ED+TL+ERT      I+ELLE+C + ++  ++G+I+ Q +G ++G  +S     I++  FE++ +     + KP +W R  DD F+++ HG+ KL E L H+N     I+ TME
Sbjct:    1 NVPVAETLKIIESRLKEDQTLNERTKLPVLMIMELLELCTQCNYFELEGKIYRQDEGMAMGSPLSPIFANIFMEEFEQKALAL--AQFKPKIWWRYVDDTFVVFPHGDTKLNEFLDHINSISPSIRLTME 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig957.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1V4J2_HETAK4.890e-8793.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWS7_HETAK2.100e-6275.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDA1_HETAK1.820e-3146.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2J7QJN5_9NEOP1.760e-2742.54Reverse transcriptase domain-containing protein n=... [more]
UPI001E274E291.980e-2439.55uncharacterized protein LOC123683035 n=1 Tax=Harmo... [more]
UPI001E2776824.370e-2439.55uncharacterized protein LOC123678684 n=1 Tax=Harmo... [more]
UPI001E276C2B4.440e-2439.55uncharacterized protein LOC123672141 n=2 Tax=Harmo... [more]
UPI001455459E4.580e-2341.48uncharacterized protein LOC117300272 n=1 Tax=Aster... [more]
A0A2J7PER2_9NEOP7.880e-2341.59Reverse transcriptase domain-containing protein (F... [more]
A0A1B6H2E9_9HEMI8.690e-2334.62Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig957contigH-akashiwo_Contig957:249333..249752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_001642-tr
PFAMsRVT_1
Model size420
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.84e-21
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.2769861-CDS-H-akashiwo_Contig957:249332..2497521681388058.2769861-CDS-H-akashiwo_Contig957:249332..249752Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig957 249333..249752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig957.8.1prot_H-akashiwo_Contig957.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig957 249333..249752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig957.8.1

>prot_H-akashiwo_Contig957.8.1 ID=prot_H-akashiwo_Contig957.8.1|Name=mRNA_H-akashiwo_Contig957.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=140bp
ALYPSIPVKKALEVVRHKLEEDETLSERTPWSPEQIVELLEICLETHFKT
IDGRIFTQSDGTSIGKSISGPITGIYLNWFEEQFIYTDRCKHKPTLWVRM
RDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMERKERGA
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mRNA from alignment at H-akashiwo_Contig957:249333..249752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig957.8.1 ID=mRNA_H-akashiwo_Contig957.8.1|Name=mRNA_H-akashiwo_Contig957.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=420bp|location=Sequence derived from alignment at H-akashiwo_Contig957:249333..249752+ (Heterosigma akashiwo CCMP452)
GCGCTGTATCCTTCCATTCCAGTGAAGAAGGCTTTGGAGGTGGTGAGGCA CAAGCTAGAGGAGGATGAGACTCTATCTGAAAGGACGCCATGGAGCCCAG AGCAGATTGTGGAGTTGTTGGAGATTTGCCTTGAAACTCATTTCAAGACA ATTGATGGGCGGATCTTCACGCAGTCTGATGGGACTTCTATCGGTAAGTC CATCTCCGGTCCCATTACAGGTATATATTTGAACTGGTTCGAAGAACAGT TCATCTATACTGATAGGTGCAAGCACAAGCCTACCCTGTGGGTGAGGATG AGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGAGAAGCTACAGGA GCTTTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCCAGTTCACTATGG AGAGAAAAGAACGGGGTGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig957:249333..249752+

>mRNA_H-akashiwo_Contig957.8.1 ID=mRNA_H-akashiwo_Contig957.8.1|Name=mRNA_H-akashiwo_Contig957.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=420bp|location=Sequence derived from alignment at H-akashiwo_Contig957:249333..249752+ (Heterosigma akashiwo CCMP452)
GCGCTGTATCCTTCCATTCCAGTGAAGAAGGCTTTGGAGGTGGTGAGGCA
CAAGCTAGAGGAGGATGAGACTCTATCTGAAAGGACGCCATGGAGCCCAG
AGCAGATTGTGGAGTTGTTGGAGATTTGCCTTGAAACTCATTTCAAGACA
ATTGATGGGCGGATCTTCACGCAGTCTGATGGGACTTCTATCGGTAAGTC
CATCTCCGGTCCCATTACAGGTATATATTTGAACTGGTTCGAAGAACAGT
TCATCTATACTGATAGGTGCAAGCACAAGCCTACCCTGTGGGTGAGGATG
AGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGAGAAGCTACAGGA
GCTTTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCCAGTTCACTATGG
AGAGAAAAGAACGGGGTGCT
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