mRNA_H-akashiwo_Contig957.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig957.3.1
Unique NamemRNA_H-akashiwo_Contig957.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig957.3.1 vs. uniprot
Match: A0A7S3UUU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUU9_HETAK)

HSP 1 Score: 199 bits (506), Expect = 9.910e-61
Identity = 131/143 (91.61%), Postives = 133/143 (93.01%), Query Frame = 1 
Query:  190 EQVGEAPSTTPP-LTRI-AAYPSPGAKLGWKVMKGLFHQRVRDMICFVSTPRAWEEYHAHVAAMGGQGEGLLPXXXXXXXXXXXXXXXXXXXXXXXXSRRLEGYQPQQGPFHFPNSPISRKGAAQQQQQGKEGKKKVKAAVAQ 612
            +QVGEA    P  LTRI   +PSPG KLGWKVMKGLFHQRVRDMICFVSTPRAWEEYHAHVAAMGGQGEGLLPXXXXXXXXXXXXXXXXXXXXXXXXSRRLEGYQPQQGPFHFPNSPISRKGAAQQQQQGKEGKKKVKAAVAQ
Sbjct:  105 KQVGEALKHYPGRLTRIFVLHPSPGVKLGWKVMKGLFHQRVRDMICFVSTPRAWEEYHAHVAAMGGQGEGLLPXXXXXXXXXXXXXXXXXXXXXXXXSRRLEGYQPQQGPFHFPNSPISRKGAAQQQQQGKEGKKKVKAAVAQ 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig957.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UUU9_HETAK9.910e-6191.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig957contigH-akashiwo_Contig957:182566..183217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size652
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.0646749-UTR-H-akashiwo_Contig957:182565..1828441681388058.0646749-UTR-H-akashiwo_Contig957:182565..182844Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig957 182566..182844 +
1681388058.0876322-UTR-H-akashiwo_Contig957:183180..1832171681388058.0876322-UTR-H-akashiwo_Contig957:183180..183217Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig957 183181..183217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.076467-CDS-H-akashiwo_Contig957:182844..1831801681388058.076467-CDS-H-akashiwo_Contig957:182844..183180Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig957 182845..183180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig957.3.1prot_H-akashiwo_Contig957.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig957 182845..183180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig957.3.1

>prot_H-akashiwo_Contig957.3.1 ID=prot_H-akashiwo_Contig957.3.1|Name=mRNA_H-akashiwo_Contig957.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MKGLFHQRVRDMICFVSTPRAWEEYHAHVAAMGGQGEGLLPPPTAMARRE
EEGEEDDEGGLLDDSSRRLEGYQPQQGPFHFPNSPISRKGAAQQQQQGKE
GKKKVKAAVAQ*
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mRNA from alignment at H-akashiwo_Contig957:182566..183217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig957.3.1 ID=mRNA_H-akashiwo_Contig957.3.1|Name=mRNA_H-akashiwo_Contig957.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=652bp|location=Sequence derived from alignment at H-akashiwo_Contig957:182566..183217+ (Heterosigma akashiwo CCMP452)
GCCGTGCCGCTACGTGAAGAAGGGCGCGGcGGCGCCGCCGGGCCGCCTGG
ACGAGCTCTTTGTGCTGACGCTCGAGGAGGCGCTGCGCGAGATGGGGCCC
GGGGCGGCCGGCGCCGCGGCCACCTTTGCCTTCGTCTGCGACTTTGAGGG
ATTCAAGGTGCAGCGGCACCTGCCGCCCATGGCCGAGCTGAGCAGGTGGG
CGAGGCGCCAAGCACTACCCCGCCGCTGACCCGCATCGCAGCGTACCCCA
GCCCGGGCGCCAAGCTGGGCTGGAAGGTGATGAAGGGCCTGTTCCACCAG
CGGGTGCGGGACATGATCTGCTTTGTGTCCACCCCGCGGGCCTGGGAGGA
GTACCATGCGCACGTGGCGGCGATGGGGGGGCAGGGGGAGGGCCTGTTGC
CTCCGCCCACGGCAATGGCAAGAAGAGAGGAGGAGGGGGAGGAGGACGAT
GAAGGCGGTTTGCTGGACGACTCGTCCCGTCGGTTGGAGGGCTACCAGCC
ACAACAGGGCCCGTTCCATTTCCCAAACAGCCCTATTTCTAGAAAGGGAG
CAGCTCAGCAGCAGCAACAAGGCAAAGAAGGAAAAAAAAAGGTCAAAGCA
GCTGTTGCCCAATAATAAAATCATATATAATAGTAGTAATACTGGTGTGA
TG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig957:182566..183217+

>mRNA_H-akashiwo_Contig957.3.1 ID=mRNA_H-akashiwo_Contig957.3.1|Name=mRNA_H-akashiwo_Contig957.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig957:182566..183217+ (Heterosigma akashiwo CCMP452)
ATGAAGGGCCTGTTCCACCAGCGGGTGCGGGACATGATCTGCTTTGTGTC
CACCCCGCGGGCCTGGGAGGAGTACCATGCGCACGTGGCGGCGATGGGGG
GGCAGGGGGAGGGCCTGTTGCCTCCGCCCACGGCAATGGCAAGAAGAGAG
GAGGAGGGGGAGGAGGACGATGAAGGCGGTTTGCTGGACGACTCGTCCCG
TCGGTTGGAGGGCTACCAGCCACAACAGGGCCCGTTCCATTTCCCAAACA
GCCCTATTTCTAGAAAGGGAGCAGCTCAGCAGCAGCAACAAGGCAAAGAA
GGAAAAAAAAAGGTCAAAGCAGCTGTTGCCCAATAA
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