mRNA_H-akashiwo_Contig957.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig957.11.1
Unique NamemRNA_H-akashiwo_Contig957.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.280e-28
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   31 LQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCIDQQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            L +AM NAR N  AG SPGAGL++A +Q+DAA+ADLI T +D QG++L  +EV  LA+ G M +D   +KK KGLF DM DV  AL GGAHI +RDDG++
Sbjct:   82 LSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQD-STSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.760e-25
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   31 LQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCIDQQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            L  A++NAR+N E G SPGAGL TA+EQ+DAAYADLI T +DQ+ +SL  +++  L K G M +    +++ +G  GD+ DVF AL GGAHI R+ DG I
Sbjct:   11 LAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMM-DSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: A0A5J4YNM4_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNM4_PORPP)

HSP 1 Score: 99.8 bits (247), Expect = 6.400e-25
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   10 GEKISEKLQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCIDQQGISLSSDEVDGLA-KGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            GE++ EKL+ AM  AR+NQ  G SPGA  +++++ + AAYADLI     QQ   LS  E++  A +GG MWE+G K +K KG  GD VD+ KAL GGAHI R+DDG I
Sbjct:    8 GEEL-EKLKKAMALARENQRRGESPGANAESSEDAAYAAYADLIVQSSSQQQRELSDSELEVFAARGGQMWEEGSKQRKSKGPVGDFVDMIKALFGGAHIVRQDDGRI 114          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 7.340e-23
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   25 EKLQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCID-QQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            E L+ AM NARKN   G SPGAGL TA EQ++AA+ADLINT +D     +L+  E+  L++GG M ++G KA+K  GL  D+V +F+ALG GAHI ++ DG +
Sbjct:  117 ETLEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRM-DEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 218          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 4.160e-21
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   43 MENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCID-QQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            M NARKN   G SPGAGL TA EQ++AA+ADLINT +D     +L+  E+  L++GG M ++G KA+K  GL  D+V +F+ALG GAHI ++ DG +
Sbjct:   71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRM-DEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 166          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 84.0 bits (206), Expect = 3.950e-18
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   31 LQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCIDQQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGAHITRRDDGSI 330
            + A+M  AR  + +G SPGAGL +A++Q++AA+AD+INT +D  G +L +D    LA+GG M +    ++K  G++ D+ D+F ALG GAHI R+ +G +
Sbjct:   69 IAASMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRM-DGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNGRV 167          
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.870e-16
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   31 LQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTCID-QQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKAL 288
            L+ AM NARKN   G SPGAGL TA+EQ++AA+ADLINT +D     +L+  E+  L++GG M ++G KA+K  GL  D+V +F+AL
Sbjct:  122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRM-DEGSKARKSGGLLADVVGLFEAL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig957.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVP2_ECTSI2.280e-2857.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCH3_9STRA2.760e-2552.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YNM4_PORPP6.400e-2551.85Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7R9XNM3_9CHLO7.340e-2351.46Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A830HV35_9CHLO4.160e-2151.55Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
C1MJA6_MICPC3.950e-1843.00Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S2FA39_9CHLO2.870e-1651.72Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig957contigH-akashiwo_Contig957:365937..366269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVP2
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.73e-29
EggNOG OGs2D476@1|root,2SU5J@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006010.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.4182959-CDS-H-akashiwo_Contig957:365936..3662691681388058.4182959-CDS-H-akashiwo_Contig957:365936..366269Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig957 365937..366269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig957.11.1prot_H-akashiwo_Contig957.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig957 365937..366269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig957.11.1

>prot_H-akashiwo_Contig957.11.1 ID=prot_H-akashiwo_Contig957.11.1|Name=mRNA_H-akashiwo_Contig957.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
SNDGEKISEKLQAAMENARKNQEAGYSPGAGLKTADEQSDAAYADLINTC
IDQQGISLSSDEVDGLAKGGTMWEDGQKAKKGKGLFGDMVDVFKALGGGA
HITRRDDGSI*
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mRNA from alignment at H-akashiwo_Contig957:365937..366269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig957.11.1 ID=mRNA_H-akashiwo_Contig957.11.1|Name=mRNA_H-akashiwo_Contig957.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig957:365937..366269- (Heterosigma akashiwo CCMP452)
TCAAATGACGGTGAAAAAATATCTGAAAAGCTACAGGCTGCAATGGAAAA CGCTCGGAAAAACCAAGAGGCGGGATATTCTCCAGGGGCTGGCCTTAAAA CTGCCGATGAACAATCCGATGCAGCCTACGCGGATTTGATCAACACATGC ATTGATCAACAAGGGATCAGTTTGAGCTCTGATGAAGTTGATGGCCTCGC AAAGGGCGGAACAATGTGGGAAGATGGGCAAAAGGCAAAGAAGGGCAAAG GGCTCTTCGGGGATATGGTCGACGTTTTCAAGGCACTTGGCGGAGGTGCG CATATCACACGCCGAGACGACGGATCAATTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig957:365937..366269-

>mRNA_H-akashiwo_Contig957.11.1 ID=mRNA_H-akashiwo_Contig957.11.1|Name=mRNA_H-akashiwo_Contig957.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig957:365937..366269- (Heterosigma akashiwo CCMP452)
TCAAATGACGGTGAAAAAATATCTGAAAAGCTACAGGCTGCAATGGAAAA
CGCTCGGAAAAACCAAGAGGCGGGATATTCTCCAGGGGCTGGCCTTAAAA
CTGCCGATGAACAATCCGATGCAGCCTACGCGGATTTGATCAACACATGC
ATTGATCAACAAGGGATCAGTTTGAGCTCTGATGAAGTTGATGGCCTCGC
AAAGGGCGGAACAATGTGGGAAGATGGGCAAAAGGCAAAGAAGGGCAAAG
GGCTCTTCGGGGATATGGTCGACGTTTTCAAGGCACTTGGCGGAGGTGCG
CATATCACACGCCGAGACGACGGATCAATTTAA
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