mRNA_H-akashiwo_Contig956.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig956.13.1
Unique NamemRNA_H-akashiwo_Contig956.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig956.13.1 vs. uniprot
Match: A0A7S3UZ87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ87_HETAK)

HSP 1 Score: 124 bits (311), Expect = 1.120e-34
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 SEELLARAGVPPGQDPGKNDIRHKVAEVAEILKAAHGTHELTSEHTAVWEGYLWHQYQ 174
            SEELLARAGVPPGQDPGKNDIRHKVAEVAEILKAAHGTHELTSEHTAVWEGYLWHQYQ
Sbjct:  106 SEELLARAGVPPGQDPGKNDIRHKVAEVAEILKAAHGTHELTSEHTAVWEGYLWHQYQ 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig956.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UZ87_HETAK1.120e-34100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig956contigH-akashiwo_Contig956:413180..420535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_008860.1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.7608147-CDS-H-akashiwo_Contig956:413180..4133061681388057.7608147-CDS-H-akashiwo_Contig956:413180..413306Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig956 413181..413306 -
1681388057.7728884-CDS-H-akashiwo_Contig956:420487..4205351681388057.7728884-CDS-H-akashiwo_Contig956:420487..420535Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig956 420488..420535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig956.13.1prot_H-akashiwo_Contig956.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig956 413181..420535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig956.13.1

>prot_H-akashiwo_Contig956.13.1 ID=prot_H-akashiwo_Contig956.13.1|Name=mRNA_H-akashiwo_Contig956.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
SEELLARAGVPPGQDPGKNDIRHKVAEVAEILKAAHGTHELTSEHTAVWE
GYLWHQYQ
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mRNA from alignment at H-akashiwo_Contig956:413180..420535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig956.13.1 ID=mRNA_H-akashiwo_Contig956.13.1|Name=mRNA_H-akashiwo_Contig956.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7356bp|location=Sequence derived from alignment at H-akashiwo_Contig956:413180..420535- (Heterosigma akashiwo CCMP452)
TCCGAGGAGCTCCTCGCCCGCGCAGGCGTGCCCCCGGGGCAGGATCCGGT
GGGCGGGCTGGGGGTGAGCCGAGGGCCGGCTAACGGCAGGCGGGCAGGAG
GGCGGGCGGGCAGGTCTCCGCTGCTGCTGCCCGGCAGCGTTCTTCTTCTT
CCTCCGGCCTCTTGCTGACAATCACGGTGGAGGGGGGCATGAGACGTTGC
CATCATTCAGTTTTAAGCCTCCTGCTTTTCATGCGGTTGGAACAGGCGGC
CATCCCCCACTGCTGCATAGCCGTGTTCTTCTTCCTTCGTCTGCTGTTGG
TGATCGCGGTTGAGGGCGGCAGTGAGATGTTGCCATCATTTACTTTCATT
GAGCCTCTCTCTGCCTTTCAAACCGTTAGAATAACTGACGGTCATAGCAG
ACCTTTCCACTTCAATTCAACTTTACTAGCGACAAAAAATGTTCAATGTA
TGTTCATTCATCACTCTAGCACAACTATTATATTCAGTGCAGCAGAAGAT
GATATTATACTATAAAAGTCATTTTTTCATATATTGAAGCGGAAGGGTCT
GCTTATAGAAGCTACATAGGGGCTTAGCCCCGAAATCGAATTGAAAGAGG
TTAGACTGTAAGCTTAATCTAACATCATCATCATTATCATCATATGATTA
TGATGATGATGTTATTGTTAGTTTCATATATTTTTATGTATACTACTATT
GAATTAGCGTGCGTGACCCAATAGTTGCTTTGATCAAAAGCCATACTGGC
GTATCTCTTCTGAAAATACTACTGGAGCATACTTATCCCATGTCGCATCC
ACCACAGAGAGTCCATTACCTGCTTACTATACCACCACAGTGATTCTTCT
GGCCATTTTAAAGCCATATTGCTTGTTGCTGCTGCAGTGCAGGGACCGCC
TTTATTACTACCTTTAATGGAGCTGGGTTAGATTTGGCCAACTAGGTGAC
TCTGTGAAGAAGGTATAACTGCATGGCGAAACGGCGGGAGGCGGGAGATG
TTAAAGATTACATGATTGTTCCAATCCTCCATCAGTGATCATTTTTCTAA
TCATGAATAAATAATACAATAATATATATAGTTGGTTGTTGGGCATCGTC
CGCTTGCACAGAACCACAGCAGTTGGCTTGGTTTGATAAACCCGCACGCA
AAACAAACCTGATGATGACTGATGATGATGTGGCTGATGACCTCCACACA
AATGACAGCTGCTATGCTGCTGACCTGGCAAAGGCAACACAACATGATTG
TGTGTTGCCTCATGTGCTGTGCACCTACCTTTCCCTTCTGTATCATTCCC
ACTCTCCCACTTGTACTAACCACAATAAAATGACTTATTTCTCTCTCTTG
GGCCTGGCCTTCGTGGCCTGGCCCCCTCAGCCTCCAGCTGGGCTGCCTTT
GTTGTGCCACTACACACAATTGTTATGGGCTTTGACTGATCGCACCACCT
CTGTGCGTATTGGCGGCCCGCTAAACTGGAGCTTCGAGATCGATATCTCA
GCTGGTCGCTTCTATGTCATGCTGGGGCATGGTGATCTTTGAAGGCCGAT
TCTGTGCTGCTCACCCTTCTGGATTGGGTGGCCCTGGGCTAGAAGTCCGA
AAGGACTCGCCTAGATGGCTCGATTTTCTTCTGGGATCTCTCTGACACTG
TCTTCCACCTTCCTGATAGCTTGTGCCATCGTTTGTTGGGAATGAAGCGA
GTTTGGGGCCTTCTTCTGAAATTGCCCTCTTCTGCTTCTGCTGCTGCTAC
TGCGTTTTTGGGGCCGCCCGCTCTCGCGACCCTGCTGGTGACCGTCCTCC
CCGTAGTCATGATGAATGGTGCTAAAGCCTTCTCGTGCCGGTACTCAGAG
ACGAACTCGCCCTCGCCAGGGCCATTAGTGGGCTGCTCTGACCTCGCCAG
CACGCAAGAGTGACCTCTGAATTCTGCTCTCGTGTTACTGCTCTTGCACA
TGATTGTGAACTGTTTTTGAGCATGATGATGATCGACTTCTCACCCCTCC
TCTCTAGTGATTCGAATCTGATTTTTCATTCTCTTTAAAAGATAACTTTG
ACTTTGTACATTTCTGAACCGTTTTCTGTGAGCTCTTGACTCTCTTTGCC
ACGTTCGTTTACTCATCACTGGAATCAACGGCGGGGAAGTCGTTACCCCC
TGCTGCCAGGGCCTGGAGACTCAACATGCAATTGGTTCTCGACTAAATTC
TTCGACAAGACTGTAACTCTCATTCCCTCTGTTCCTTGATTCAACTTGGC
ATTTGGGGCACCCTGACCCTCTTTGGGCAGTAAAGAATTTTATGGGGCGA
CTACCTGCCTCTACAATAACGGTAAAATTGGTGGAGCCTTATCACTTCTG
GTGGGGCCTATTTTTATTTCTTATGACTTTCAACTTCTGGTGGAGTTCAA
CTTCTGGTGGAGCTCTTCTTCACACAGCTTTCAGCTTTTGCCCAGCGGTG
GGGGATCTTTTCTCCTACTACTGTGTTCCTGTGCTACACCTGTCCGCTGT
GGTGCAGCGTTGGTTGTTGGGCATCGTCCGCTTGCACAGAACCACAGCAG
TTGGTTTGGTTTGGTAAACCCGCACGCAAAACAAACCTGATGATGACTGA
TGATGATGTGGCTGATGACCACCACACAAATGACAGCTGCTATATGCTGC
TGACCTGGCAAAGGCAACAACAACATGATTCTGTGTTGCCTCATGTGCTG
CGCACCTAATACCTTTCCCTTTTGTATCATTCCCACTCTCCCACTTGTAC
TAACCACATGAAGACTTGTTTCTCTCTCTGGGGGCTGGTCCTTCATGGCC
TGGCCCCCTCAGCCTCCAGCTGGGCTGCCTTTGTTGTGCCACTACACACA
ACATATATTATGTAATGTAATACAATACTTTGACATTGATTGATGTCTTG
ACGTGGAACAGATATGGCACTGGTCCCAACCAGGGCCAGATCTGTTCCAC
GTCGTCAAGACATAGTCTTCAGACGCAACAAGTCTTTTCTTCAAAGGAAG
ACCGACCAGCTGTTGTACCAGGCGTACTAGGCTGTAGAGGAGAAGAACGG
CCGGGGGACCCTGAGGAAGAAGTGGGTCAAGGGCAGATTGTTTGTGAATG
ATGAGGTGGTCCGCCTCGACAGGGGGGGGAGCAGCCTCCAGGCCACCTGG
GGGGGGAGCCTGATGCTGATGATGCCCTGCTTGTCAAGGCTGGTGGGGGT
GTAGGGTGCGGCTGCTGCCAGTTGCTGTATTAGCTTTGCACGCTGATGTG
CCCCAATAAGGGCGAAAGTCAGGCTGTGTTGCATATCTACACCACTGTGA
TAGATGGTTAAAACATTTTGACTCCTATCTGAATGATGGTTTACTGCCAC
CAATGCATTATATTGCAACAAAAATACTCTGTAATATTCAAACTTGGTAT
CACAGGCAAACTTGCCTGATATGCCGTTCAATGATCCAGGTATGTTAGTC
CTCGAGGCATCATGCCACCCCGCTCTGCGTGCAGATGCAATGCGGCTATC
CCTGTTAGCCGCGCCTCCAGCCGAACGAGAATCGTCAAAGCTGATCAAAA
ACACGAAGAAAAAAAAACAACCCACCTGAGCGCTCGACTCCAGACAGCTT
CACTGAAAAGAGCCGTAAACTTCATCGGTCCAGTGAGTGACCTGACGCCT
GACTGTCCAAGCCAACTTCTGAACTGGCAGCCCAACAGGCGATGGCCCGA
GCACTTGCAACGACAAAAGTGAACCTTCGGTAACTCACAAGAAAACAGGC
CAGCAGAGCAAAAACACTGCGAGACCCATAAAGATTAATCTCGAACAGTC
GCCAGATGCCTAAACATTCGAGCTCCAACAATCATATTTTGCTTCAAAAA
TGAGCCTGCCTGGGGAGGAGGGGAAGGAAGTACCACCGCTGGAGCAGGCG
CCGCCGAGGGCCAGGAGACTGCGAGGTTTCAAAGTAACCAGGGCAAAGGT
GTCCAAGGTGCTGCGAGCTCTGGACGAGTCCAAATCGGTTGGCCCGGATG
GAGTCAGCCCACGTGTCCTCAAGCACTGCGCCAAGGAGCTGGACGTCTGT
TGGCCCGCCTGTTTCAGAAGGTGAAAAGGGCGGCAGTTTTCCAGGATAGC
TGGAAGGTGGCCCGGGTGACTCCGGTGTACAAAAAGGGTGATGCTACAGA
TCCCAAGAACTACCGGCCAGTCTCGGTGCTGCCAACCCTGGCGACAACTT
TTGAGCGCGTGCTGATGCCCCAGTTGAGCTCTTTCCTGTATGAGCACATC
CCTCCGGAACAGTTTGGCTTCTTGCGTGGTACGGGCACCGCGGACGTTGG
CGTCATCATTGCTAACCAGATCGCCCGGTCACTTGAGGCTAGGAAGGATG
TGAGGCTTGTGGCTCTGGATTTCAAGGGCGCCTTCGACAAGGTCTGGTGG
AGGGGGGTGCTTGAGCACCTGTGGGCGGTAGGGGTGCGGGGCAGAGCCTT
CAAGCTTTTTCAAAGCTACCTGTCAGGCAGATCTCTGTTCGTGGTGGCTA
ATGGGGAGGCTTCTGACCGGGTGCAGAACAACTCTGGGGTCCCACAAGGG
GCCATCTGGTCCCCACTCTTGTTCAACCTGTTTGTGCGCAATGTACCTGC
TGATGTGAAAGAGGCTCTTTGTCTCTTCTATGCGGATGACCTCACGCTCA
TGATGGAGATCCAAAAGAGCGAAGAAGGTGAGGCGGCACAGAAACTGGAT
GAGGACCTTGAAAGACTGCACAACTGGGGGGACCAGTGGCTGCTGGAGTT
TGAGGCCACCAAGTCGCAGAGCCTCCTTGTCTCAAACAAGGGCGAGGAAA
GCAAGGCTCAGCACAGACCATTGAGCATGGGCGGCTTCACTGTTGAGGAA
AAGGAGCAGCTGAAAGCTTTGGGGTTCATTATTGACCCCAAGGGCAATTG
GTCGCTTCACGTCCAACAAACAGCAGCAGATGCGAGGAAGAGGCTTGGGG
CTATCAGAAGGGTGGCCCACTTGCTGGACAACCAGGGCATCATGATGGCC
TACACAGCCTTTGTGAGATCTAAAATTGAGTATGGCAACCTAGTCTACTG
GGGGTAGCAAATACCAATCTTGGGATGCTAGACAAAGTCCAGCAGAGCGC
CATCTCCCTTCTTGATGACCCAGAGCCCTCCCTCCTGCCTTGTCCACTGG
AGCGCAGAAGAGAGGCGGCGGCAGTTGGGCTGTTGGTCAAACTGCTTGAT
GGTGAAGGGCGCGGGCGGGTGAATGAGCTGAAACCGGAGCGCATGGACCC
ATCCCAAACATCGCTTAGGAGATCAACACGACTTGCTGCTGCAAAGGCAC
CACCACATCACCACCAGCTGAGGCCAGCCCCGGTTCACAACAGCAAGTCT
CTGGAGACTTACAGAAGAAGCTGGGGAGTAAGAATTCCTCAAGTTTGGAA
CAACCTCGACTATGAAATGCTTCATCAACAACAACACATCGAAAATTTCA
CTCCACTTAGAAAACAACTCCAAAGACATATGACGACGAGTGCGAAACAA
AAGTAGTGTATTGGGATTTATTTTTCCTGATTGCTTAAACGTATTTAAAA
AAAAAAAAATCATTCGCGCACAGCGCAGTCAACGCAAGAAAGAAAAAATG
GCAAATGACAACAGCAACAGAAACATGATACTGGACTTATTTTCCTGTTG
AAAAAATTCAATGTAACATCCCTAACAGGCCCGATGAGCCTAAGAGTGGC
AGCTCAACCACTACTCACTTCATCCAGCAAGTGGAAGTGCAATACTGTTG
CACAGGAGACTCCACGGTCGCGCCCATCCGATGATCAAAACAATTTCATC
ATCACTGAACCAGTAGACTCAATAGACTCAAGTCATTCAGTACCGATCAT
CATGTTAATCACTTACTAGTAGTTAGGTTATTGCACGCTGATGTGCCCCA
ATAAGGGCGAAAGTCAGGCTGTGTTGCATATCTACACCACTGTGATAAAT
GGTTAAAATATTTTGACTCCTATCTGAATGATAGTTTACTGCCACCAATG
CATTATATTGCAACAAAAAAACTCTTTAATAATCAAACTTGGTATCACGG
GCAAACTTGCCTGATATGCCGTTCAATGATCCAGGTATGTTAGTCCTCGA
GGCATCATGCGTGCAGATGCAATGCGGCTATCCCTGTTAGCCGCGCCTCC
AGCCGAATGAGAATCGTCAAAGCTGATAAAAAAAACGAAAAAAAACAACC
CACCTGAGCACTCGACTCCAGACAGCTTCACTGAAAAGAGCCGTAAACTT
CATCGGTCCAGTGAGTGACCTGACGCCTAACTGTCCAAGCCAACTTCTGA
ACTGGCAGCCCAACAGGCGAGGGCCCCAGCACTTGCAACGACAAAAGTGA
ACCTTCGATAACTCACAAGAAAACAGGCCAGCAGAGCGAAAACTTGCAAG
ACCCATAAAGATTAATCTCGAACAGTCGCCAGATGCCTAAACATTCGAGC
TCCAACAATCATTCGCGCACAGCGCAGTCAACGCAAGAAAGGAAAAATGG
CAAATGACAACAGCAACAGAAACATGATACTGGACTTATTTTTTTCCTGT
TGAAAAAATTCAATGTAACATCCCTAACAGGCCCGATGAGCCTAAGAGTG
GCAGCTCAACCACTACTCACTTCATCCAGCAAGTGGAAGTGCAACACTGT
TGCACAGGAGACTCCACGGTCGCGCCCATCCGATAATCAAAGCAGTTTCA
TCATCACTGAACCAGTAGACTCAAGTCATTCAGTACCGATCATCATGTTG
ATCACTTACAGGTAGTTAGGTTATTGCACGCTGATGTGCCCCAATAAGGG
CGAAAGTCAGGCTGTGTTGCATATCTACACCATTGTGATAGATGGTTAAA
ACATTTTGACTCCTATCTGAATGATAGTTTACTGCCACCAAAGCATTATA
TATTGCAACAAAAAAACTCTCTACTACTACTAATAATAATTTGACCATTT
AGCCTCCTGTAGCACTTTTTTTGCAACAGTGTCGTTTGGCCACACATGGC
ATTTTTGACACTTAAATCTTAAATCTTAATGTCAAAGTAGAATGAAAGAT
GATCTAATAATGACCTGTCTTGCCAGAGACTGCAAAAAATCAATAATAAA
TAATCAATACAATACAATAATGAATGACACCATGTTTTCAATAAACATCT
TCCATCAGCTGAGCTCTTCCTGACCTCTTATGCCCTCCTCCTCCATGAAC
CACTTCGTGCATGATGGTTGATGATGCAGGGGAAGAATGATATCCGGCAC
AAGGTGGCCGAAGTGGCGGAGATCCTGAAGGCGGCCCACGGTACGCATGA
ACTCACTTCGGAGCACACGGCCGTATGGGAGGGTTACCTGTGGCACCAGT
ACCAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig956:413180..420535-

>mRNA_H-akashiwo_Contig956.13.1 ID=mRNA_H-akashiwo_Contig956.13.1|Name=mRNA_H-akashiwo_Contig956.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig956:413180..420535- (Heterosigma akashiwo CCMP452)
TCCGAGGAGCTCCTCGCCCGCGCAGGCGTGCCCCCGGGGCAGGATCCGGG
GAAGAATGATATCCGGCACAAGGTGGCCGAAGTGGCGGAGATCCTGAAGG
CGGCCCACGGTACGCATGAACTCACTTCGGAGCACACGGCCGTATGGGAG
GGTTACCTGTGGCACCAGTACCAG
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