mRNA_H-akashiwo_Contig952.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig952.6.1
Unique NamemRNA_H-akashiwo_Contig952.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig952.6.1 vs. uniprot
Match: A0A7S4DJ45_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ45_HETAK)

HSP 1 Score: 224 bits (572), Expect = 3.760e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 KVRSLLLFLLIMMVLENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPLA 330
            KVRSLLLFLLIMMVLENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPLA
Sbjct:   23 KVRSLLLFLLIMMVLENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHRPGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQANLSLGYQPLA 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig952.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DJ45_HETAK3.760e-72100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig952contigH-akashiwo_Contig952:103622..104153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categorysignal peptide
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388056.795336-CDS-H-akashiwo_Contig952:103623..1037091681388056.795336-CDS-H-akashiwo_Contig952:103623..103709Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 103624..103709 -
1681388056.806856-CDS-H-akashiwo_Contig952:103909..1041531681388056.806856-CDS-H-akashiwo_Contig952:103909..104153Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 103910..104153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig952.6.1prot_H-akashiwo_Contig952.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig952 103624..104153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig952.6.1

>prot_H-akashiwo_Contig952.6.1 ID=prot_H-akashiwo_Contig952.6.1|Name=mRNA_H-akashiwo_Contig952.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp
KVRSLLLFLLIMMVLENVDMHQPRTSDRSHPTDDEIMKVAAATWAVYEHR
PGLQYLDIGNDTMEIIGIRQYGPSKCLIASSGGKLYIALRGSQTWEDWQA
NLSLGYQPLA
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mRNA from alignment at H-akashiwo_Contig952:103622..104153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig952.6.1 ID=mRNA_H-akashiwo_Contig952.6.1|Name=mRNA_H-akashiwo_Contig952.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=532bp|location=Sequence derived from alignment at H-akashiwo_Contig952:103622..104153- (Heterosigma akashiwo CCMP452)
AAAGTCCGCTCGCTTCTGCTGTTTCTCTTGATCATGATGGTCTTGGAAAA
TGTAGACATGCATCAACCAAGAACGAGCGATAGAAGCCACCCCACAGATG
ATGAGATCATGAAAGTTGCTGCAGCTACATGGGCAGTGTATGAACATCGA
CCGGGATTGCAGTATCTTGATATTGGAAATGACACAATGGAAATAATAGG
CATAAGACAATACGGCCCCAGCAAATGCCTCATAGCATCATCAGGTATAC
AGACAAAAGAACATGAATCGCGATTATACATATATAGTAGAAAAAGTACC
AGCTCACTGGAGAATGCTCTCTGATTTTTTTCTCTTTTGTTGTACAGAAA
AAACTCCTGGTCATACATATTCATCATGTATCTAGGTTTTCGACACCCTG
TCCCTCCTCCTCCACACTTACCAAAAAAATAATCATGACATCAGGCGGGA
AGCTGTACATCGCGCTGAGGGGCAGCCAGACCTGGGAGGACTGGCAGGCC
AACCTCTCGCTGGGCTACCAGCCACTGGCCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig952:103622..104153-

>mRNA_H-akashiwo_Contig952.6.1 ID=mRNA_H-akashiwo_Contig952.6.1|Name=mRNA_H-akashiwo_Contig952.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig952:103622..104153- (Heterosigma akashiwo CCMP452)
AAAGTCCGCTCGCTTCTGCTGTTTCTCTTGATCATGATGGTCTTGGAAAA
TGTAGACATGCATCAACCAAGAACGAGCGATAGAAGCCACCCCACAGATG
ATGAGATCATGAAAGTTGCTGCAGCTACATGGGCAGTGTATGAACATCGA
CCGGGATTGCAGTATCTTGATATTGGAAATGACACAATGGAAATAATAGG
CATAAGACAATACGGCCCCAGCAAATGCCTCATAGCATCATCAGGCGGGA
AGCTGTACATCGCGCTGAGGGGCAGCCAGACCTGGGAGGACTGGCAGGCC
AACCTCTCGCTGGGCTACCAGCCACTGGCC
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