mRNA_H-akashiwo_Contig952.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig952.5.1
Unique NamemRNA_H-akashiwo_Contig952.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig952.5.1 vs. uniprot
Match: A0A7S3XYS3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYS3_HETAK)

HSP 1 Score: 270 bits (690), Expect = 2.410e-90
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 2 
Query:   29 APVKSAAEQKEEFEMLIHKTLQGNVLIIGKMRENLLTGKLMDNYSLMEKFDENINIIISMLDTLQCRMPALPVQVNKLLLSAHQSQKGEGVVGPLPPVTSGDMEVSFNSLLAQQQAGMPWAPGSLSGPGGGGGFFGSK 442
            APVKSAAEQKEEFEMLIHKTLQGNVLIIGKMRENLLTGKLMDNYSLMEKFDENINIIISMLDTLQCRMPALPVQVNKLLLSAHQSQKGEGVVG LPPVTSGDMEVSFNSLLAQQQAGMPWAPGSLSGPGGGGGFFGSK
Sbjct:   24 APVKSAAEQKEEFEMLIHKTLQGNVLIIGKMRENLLTGKLMDNYSLMEKFDENINIIISMLDTLQCRMPALPVQVNKLLLSAHQSQKGEGVVGQLPPVTSGDMEVSFNSLLAQQQAGMPWAPGSLSGPGGGGGFFGSK 161
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BLAST of mRNA_H-akashiwo_Contig952.5.1 vs. uniprot
Match: A0A7S2G893_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G893_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.050e-6
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:   44 AAEQKEEFEMLIHKTLQGNVLIIGKMRENLLTGKLMDNYSLMEKFDENINIIISMLDTLQCRMPALP 244
            A   K  +E+ + + LQ N+++IG++RENL+  KL  N +LM KF++N++ I +M+  L   +P LP
Sbjct:   86 APASKFPYELQVSQLLQENLILIGRLRENLIGVKLAKNIALMRKFEDNVSAIFTMIRALPVMIPPLP 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig952.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XYS3_HETAK2.410e-9099.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G893_9STRA1.050e-638.81Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig952contigH-akashiwo_Contig952:99373..101171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000021979
Model size571
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.43e-06
EggNOG OGs2CSYT@1|root,2S4AM@2759|Eukaryota,1MH0T@121069|Pythiales
Descriptionfunction. Source PGD
Cds size444
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.3242834-UTR-H-akashiwo_Contig952:99372..993731681388057.3242834-UTR-H-akashiwo_Contig952:99372..99373Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig952 99373..99373 +
1681388057.3700707-UTR-H-akashiwo_Contig952:101045..1011711681388057.3700707-UTR-H-akashiwo_Contig952:101045..101171Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig952 101046..101171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.336763-CDS-H-akashiwo_Contig952:99373..994661681388057.336763-CDS-H-akashiwo_Contig952:99373..99466Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 99374..99466 +
1681388057.347927-CDS-H-akashiwo_Contig952:99668..997811681388057.347927-CDS-H-akashiwo_Contig952:99668..99781Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 99669..99781 +
1681388057.3579445-CDS-H-akashiwo_Contig952:100807..1010451681388057.3579445-CDS-H-akashiwo_Contig952:100807..101045Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 100808..101045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig952.5.1prot_H-akashiwo_Contig952.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig952 99374..101045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig952.5.1

>prot_H-akashiwo_Contig952.5.1 ID=prot_H-akashiwo_Contig952.5.1|Name=mRNA_H-akashiwo_Contig952.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=148bp
MNMVGMGMPAPVKSAAEQKEEFEMLIHKTLQGNVLIIGKMRENLLTGKLM
DNYSLMEKFDENINIIISMLDTLQCRMPALPVQVNKLLLSAHQSQKGEGV
VGPLPPVTSGDMEVSFNSLLAQQQAGMPWAPGSLSGPGGGGGFFGSK*
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mRNA from alignment at H-akashiwo_Contig952:99373..101171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig952.5.1 ID=mRNA_H-akashiwo_Contig952.5.1|Name=mRNA_H-akashiwo_Contig952.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1799bp|location=Sequence derived from alignment at H-akashiwo_Contig952:99373..101171+ (Heterosigma akashiwo CCMP452)
CATGAACATGGTGGGCATGGGGATGCCTGCACCAGTGAAGAGTGCGGCGG
AGCAGAAGGAAGAATTCGAGATGCTGATTCACAAGACACTGCAGGTGTGT
GTGTTGGTTTTCTTTGTTAAGTGGGGGTTGAGGGGAGGGGGCTGCTTTCA
TTAGCTTTCTGGTCTGTATGCTTCATTTGTGTACTTCAGCTGAAACCTAT
GAATTTAAAAAAGTGACGATGAATGTTTTGGTCAACCACTGAAGATTGAT
AAAACCAAAAAATGCAGCCTTTTCTTTTTTTTTTTGGCTCTAACAGGGTA
ATGTTCTTATCATTGGAAAGATGCGTGAGAACTTACTGACAGGAAAGCTG
ATGGACAACTACAGTCTGATGGAGAAATTTGATGAAAATATCAACATCAT
TATTTCAATGTACGTTCAGCCATGATGATGCTTTGCATTTATTTAAGGTC
CAGCCACTTGAAAACTAGAAGGACCGAAGTCCCGGCCTCCACAAACAAAT
ATGGACCCTTCCACTTCTAGACCCTGTAACCTAGATCCCTTTTTCATCAC
CAAAACCCACTATACTGTTCTAACTGCATGCATCCCCGTTGTGCCAATCA
CCCCTCTCCCTTCCTTCCTACGCACTGCTTCCTCTACTCCCCAATATTCC
TCCTCTAATCCCATTGTGGGTGAAGGTCCAAGGCAGCTATATGTTGCTGC
ATTCGAATGTATAAATATATTGTGACCTGCTATTTTAAATTGGATTGCGC
CTTCATGCAACGTGTAGTCATTTTAAAGAAAACTTTCCCCTTTGGATTTT
TTTTTTGGTCTATGTGTAAGCACATCGTGGAGAAAATAGCTGAGAATATA
CATAATCAGAAAAGTGATCAGCGATGGAATAGAACAATTATGATGTAATC
TTCTGGTAAATGATACGCCTCTCCAGCTCCCGACGTTTCGACATGCAGTC
ATGCCTTCTTCACAGAGTCAACAACAACAACACCGAACAGCTGACAAGAT
ATAAAACCCGCAACCGTCGTGGTTACCGCACCCACTCTTCTTCTTCCCTC
CTCCTTCCGTTGCGAAGGAAAAGAAAAGAAAACTGTCACCCAAGATTCAC
ACCTTCCTTTTCGTTTTCGATCTCGCCCGCCCTTTCTTCTTCGACTCCTT
GCTTTCTACGCACCCAAAACTAACAGAGTAATCCATCTCGGTGCCCCAGC
GTTTTCCAACGGCACCGCTCCCATCCATATGCAGATCCCGTCCGGGGCCT
CCTCATCAGTGTGCGAGCACCGCTGCTGCTTCATCAGTGCCTCACTCCTC
CTGAGCCGCGTCATCCGCTGGCCCCGAGATCCCCCTATACCCCCAACATT
GCCCTCGCGCTCCTCATTGTATATATATCGTATATTATCACCAAATCAAT
GCTGTGTTGCCGCTCTTAAACCCCTCCTATATCAGGTTAGACACCCTGCA
GTGCCGGATGCCAGCGCTCCCTGTGCAAGTGAACAAGCTGCTGCTGTCTG
CGCACCAGAGCCAAAAGGGGGAgGGGGTGGTCGGGCCACTGCCACCGGTA
ACGTCAGGGGACATGGAAGTGAGCTTCAACTCCCTCCTGGCTCAACAACA
GGCCGGCATGCCCTGGGCACCAGGGTCACTTAGTGGCCCCGGTGGGGGTG
GGGGGTTCTTTGGCAGCAAGTGAAATTAAGGCAGTTAATCTTTTCCATTG
GTTTTTTGTTTGATGGGTAGCTCTTCACTATCTTTGCAGTCTCCTGGTGG
AGTATACTAACCGAGCGTAAATAATGACTGCTGAGGTCACTTTTTGTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig952:99373..101171+

>mRNA_H-akashiwo_Contig952.5.1 ID=mRNA_H-akashiwo_Contig952.5.1|Name=mRNA_H-akashiwo_Contig952.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig952:99373..101171+ (Heterosigma akashiwo CCMP452)
ATGAACATGGTGGGCATGGGGATGCCTGCACCAGTGAAGAGTGCGGCGGA
GCAGAAGGAAGAATTCGAGATGCTGATTCACAAGACACTGCAGGGTAATG
TTCTTATCATTGGAAAGATGCGTGAGAACTTACTGACAGGAAAGCTGATG
GACAACTACAGTCTGATGGAGAAATTTGATGAAAATATCAACATCATTAT
TTCAATGTTAGACACCCTGCAGTGCCGGATGCCAGCGCTCCCTGTGCAAG
TGAACAAGCTGCTGCTGTCTGCGCACCAGAGCCAAAAGGGGGAgGGGGTG
GTCGGGCCACTGCCACCGGTAACGTCAGGGGACATGGAAGTGAGCTTCAA
CTCCCTCCTGGCTCAACAACAGGCCGGCATGCCCTGGGCACCAGGGTCAC
TTAGTGGCCCCGGTGGGGGTGGGGGGTTCTTTGGCAGCAAGTGA
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