mRNA_H-akashiwo_Contig952.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig952.3.1
Unique NamemRNA_H-akashiwo_Contig952.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S3UX78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX78_HETAK)

HSP 1 Score: 392 bits (1006), Expect = 1.370e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
Query:    1 SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWT 561
            SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWT
Sbjct:   40 SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWT 226          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S3UZ34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ34_HETAK)

HSP 1 Score: 245 bits (625), Expect = 4.180e-78
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 1
Query:  160 INESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWT 561
            +NE+VL+VYNF+CK+M+WPPENIIVVGRSIGSGPAT+LAR+VP+GGLIL+SAFKSITSIA KFVG  IANLV+ANQYDNL+AI  VHCPVLFLHG EDDF+PFQH QDLYNACASSRKTL PLLGYGHN+FDWT
Sbjct:    1 MNEAVLRVYNFLCKRMNWPPENIIVVGRSIGSGPATQLARDVPIGGLILVSAFKSITSIAAKFVGESIANLVVANQYDNLSAIHHVHCPVLFLHGLEDDFIPFQHSQDLYNACASSRKTLTPLLGYGHNNFDWT 134          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S3XMG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMG0_HETAK)

HSP 1 Score: 160 bits (404), Expect = 1.580e-44
Identity = 83/188 (44.15%), Postives = 116/188 (61.70%), Query Frame = 1
Query:    7 IILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVI----ANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDW 558
            I+++CH N+TD+G  R+ L+ L   LGV+++ VEYPGYG   S  KPS+  ++ SVLKVY+++  ++ WP  NI+V+GRSIGSGPAT LA     G LIL+S F SI  +  + VG     +V      N ++NL  I QV CPVL LHGS+D  +P  H   L++ C + R +  P  G  H+ F W
Sbjct:   39 IMIHCHGNATDVGRIRETLELLADQLGVNIVAVEYPGYGCR-SDEKPSKAGLDVSVLKVYSYLRNEVGWPACNILVMGRSIGSGPATSLASHNRPGALILVSLFSSIEDLIEQRVGHRATRVVTDVFRVNGWNNLEQISQVECPVLLLHGSQDKIIPCSHSTKLFHLCKNGRISYLPRTG--HSGFRW 223          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A6H5KBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.560e-41
Identity = 74/186 (39.78%), Postives = 111/186 (59.68%), Query Frame = 1
Query:    1 SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDW 558
            S ++L+CH  S+D+G  R+ L+ L  +L  HVIGVEYPGYG   +  + +E ++N +V   +  + + M WP + ++V+GRS+GSGPA  LARE   G L L++ F  +  +A   VG  +A++   NQ+DN  A+ +  CP L LHG +D  VP  H  +LY A A++ K +A L    HN   W
Sbjct:   71 SKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLM-THDESNEQSVNAAVRVAFLHMTEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLELYRASAATTKYVALLFDSDHNRIGW 255          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: D8LMJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 5.150e-41
Identity = 71/171 (41.52%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRK 513
            S ++L+CH  S+D+G  R+ L+ L  +L  HVIGVEYPGYG   +  + +E ++N +V   +  I + M WP + ++V+GRS+GSGPA  LARE   G L L++ F  +  +A   VG  +A++   NQ+DN  A+ +  CP L LHG +D  VP  H  DLY A A++ K
Sbjct:   71 SKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLM-AHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTK 240          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S0DSL2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSL2_9EUKA)

HSP 1 Score: 152 bits (383), Expect = 7.500e-41
Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 1
Query:    7 IILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAR------EVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFD 555
            +++YCH N  D+G     L   R    VH++ +EYPGYG     G PSE +IN ++  VY+F+ +++HWP   + + GRSIG+GPA  LAR         +GG+IL   + SI ++  K +G   +NL I +++ N+ A++ + CPVL +HG  D  +P++H + LY+AC S  K L  +    HN FD
Sbjct:   54 LVIYCHGNGCDLGKIHDELLRYRDYWKVHILAMEYPGYGLC--EGTPSEASINRALYSVYDFVTRKLHWPSLFVFLYGRSIGTGPACHLARYCNKSPSTRVGGIILQCGYTSIRAVVAKSIGTLASNL-ITDRWQNIKAMKYIDCPVLLIHGQGDKLIPYEHSEKLYDACKSQHKQLIVVAEADHNTFD 239          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S2XC84_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2XC84_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 2.770e-39
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 1
Query:    7 IILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVP-----LGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFD 555
            +++YCH N  D+G     L   R    VHV+ +EYPGYG    +G P E +IN + L VYN++ KQ+ WP   I   GRSIGSGP  KL  ++      +GG+IL   + SI ++    +G  +A+ +I +++ N+  ++++ CPVL +HG +D  +P+ H + LY+ C S  K L  +    HN FD
Sbjct:   56 MVIYCHGNGCDLGTIYDELLRYREYWQVHVLAMEYPGYGLC--TGTPDEASINAATLSVYNYVTKQLRWPSLFIFFYGRSIGSGPVCKLVADLQERGTRVGGIILHCGYTSIRAVVSHSIGL-VASALIKDRWQNIKEVKKIDCPVLLIHGQQDKLIPYTHSEQLYDTCKSQHKQLVIVAEADHNTFD 240          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A0G4GSI9_VITBC (Hydrolase_4 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSI9_VITBC)

HSP 1 Score: 147 bits (372), Expect = 1.150e-38
Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 1
Query:    4 HIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVP-----LGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHN 546
            ++++Y HAN+ D+G CRK    L    GV+V+ VEYPGYG  Y  G+ +E+++  +   VY+++   +HW PE+IIVVGRSIGSGPA  +A E       L GL+LI+AF SI  + R    A  A   + + + N   + QV C V+ +HG+ED  +P  H  +L+N C +  K   P+ G  HN
Sbjct:   53 YVMVYLHANAEDLGSCRKFCTLLHDCFGVNVLAVEYPGYGLAY--GQATEESVEAATRGVYDYVTHTLHWAPEDIIVVGRSIGSGPAVSIACEAARRGSHLAGLVLIAAFTSIRDVVRGI--APWAARFMPDYFPNKDKMHQVSCGVVCVHGTEDRIIPLAHSVELFNLCGNPDKMFLPIHGGDHN 234          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A1R2BH96_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BH96_9CILI)

HSP 1 Score: 140 bits (354), Expect = 8.100e-38
Identity = 72/184 (39.13%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    7 IILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDW 558
            I+LY H N+ DIG   +    +R++L +HV+ +EYPGYG    +GKP  + I +    +YNF+   + + P +I   GRSIGSGP+T LAR   LG L L+SA+ SI  + +   G  +A  ++A ++ N+  +  +HCPVL +HG  D  VP+ H QDL+  CA     + P     HN FD+
Sbjct:   51 IMLYFHGNAEDIGLSYEMTDLIRTVLQLHVLVIEYPGYGLY--AGKPKAERILQDANSIYNFVINTLKFAPNDIFAFGRSIGSGPSTSLARFRGLGCLFLMSAYTSIRDVVKNVAGK-LAQYLVAERFRNIDNMPHIHCPVLLMHGRLDTLVPYSHSQDLHAQCAGLCHLILP-NDMDHNFFDY 230          
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Match: A0A7S0N4J5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4J5_9CRYP)

HSP 1 Score: 140 bits (353), Expect = 3.130e-37
Identity = 73/186 (39.25%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    1 SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVI-ANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFD 555
            S +++YCHANS D+G      Q L  ++GVHV+  EYPGYG    +G P ED +N +VL    F    + W  ++I++ GRSIG+GPA   AR   +GGL+L+S + +I  I    VG+ IA +   A+ +DN + IR V  P+L +HG+ DD +P  H ++L+  C + ++ L  L   GH   D
Sbjct:   78 STLLIYCHANSEDLGSIYPCAQWLCQMMGVHVLVPEYPGYGLC--TGNPCEDTVNRAVLAACTFAKDALRWDLDHILIYGRSIGTGPALNAARLGRVGGLVLVSPYTNIRDIIETHVGSVIALIAAGASDWDNRSMIRNVAVPILLIHGTADDIIPCNHSEELHELCQAPKR-LVLLERVGHQDMD 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig952.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UX78_HETAK1.370e-134100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UZ34_HETAK4.180e-7883.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XMG0_HETAK1.580e-4444.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KBU0_9PHAE3.560e-4139.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMJ7_ECTSI5.150e-4141.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0DSL2_9EUKA7.500e-4138.10Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2XC84_9EUKA2.770e-3937.23Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A0G4GSI9_VITBC1.150e-3840.32Hydrolase_4 domain-containing protein n=2 Tax=Vitr... [more]
A0A1R2BH96_9CILI8.100e-3839.13Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A7S0N4J5_9CRYP3.130e-3739.25Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig952contigH-akashiwo_Contig952:16545..17238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMJ7
PFAMsAbhydrolase_3,Hydrolase_4
Model size561
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.44e-42
EggNOG OGsCOG1073@1|root,KOG1552@2759|Eukaryota
Descriptionpalmitoyl-(protein) hydrolase activity
Cds size561
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.142994-CDS-H-akashiwo_Contig952:16544..166441681388057.142994-CDS-H-akashiwo_Contig952:16544..16644Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 16545..16644 +
1681388057.154773-CDS-H-akashiwo_Contig952:16777..172381681388057.154773-CDS-H-akashiwo_Contig952:16777..17238Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 16778..17238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig952.3.1prot_H-akashiwo_Contig952.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig952 16545..17238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig952.3.1

>prot_H-akashiwo_Contig952.3.1 ID=prot_H-akashiwo_Contig952.3.1|Name=mRNA_H-akashiwo_Contig952.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=187bp
SHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPS
EDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGL
ILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSE
DDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWT
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mRNA from alignment at H-akashiwo_Contig952:16545..17238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig952.3.1 ID=mRNA_H-akashiwo_Contig952.3.1|Name=mRNA_H-akashiwo_Contig952.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=694bp|location=Sequence derived from alignment at H-akashiwo_Contig952:16545..17238+ (Heterosigma akashiwo CCMP452)
AGCCACATTATCCTGTACTGCCACGCCAATTCAACGGATATAGGGCACTG TAGGAAGCACTTACAGGCCCTTCGTAGTTTGCTGGGGGTTCACGTAATAG GTGAGCTTATCAAAATTCATGCATTTCGAGAACATATCTTCGAAATCAAG CACTGTTGAAAATTTATAGCAGACGAAGAAACACAACGCTGACTCTGTTT CCCCTCCTCTTTGTGCGCGCGCGTAATACTCAGGCGTGGAATATCCCGGT TATGGTACTACTTACTCTTCTGGAAAACCATCAGAAGACAACATTAATGA ATCAGTCCTCAAGGTTTATAATTTCATCTGCAAGCAAATGCATTGGCCTC CTGAAAATATCATCGTTGTTGGAAGATCAATAGGCTCTGGTCCAGCAACA AAACTTGCCAGAGAAGTTCCGCTGGGGGGTCTGATTCTCATTTCAGCTTT CAAAAGCATAACAAGCATTGCTAGAAAATTTGTTGGGGCAGGCATAGCAA ATTTAGTTATCGCCAACCAGTATGACAACCTGACTGCTATTCGCCAAGTG CACTGTCCTGTTCTATTTCTTCATGGATCAGAGGATGATTTTGTACCATT TCAACACTGTCAGGATCTCTACAATGCTTGCGCTAGCAGCCGCAAAACCC TGGCACCTTTATTAGGCTACGGACACAATCACTTTGACTGGACT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig952:16545..17238+

>mRNA_H-akashiwo_Contig952.3.1 ID=mRNA_H-akashiwo_Contig952.3.1|Name=mRNA_H-akashiwo_Contig952.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=561bp|location=Sequence derived from alignment at H-akashiwo_Contig952:16545..17238+ (Heterosigma akashiwo CCMP452)
AGCCACATTATCCTGTACTGCCACGCCAATTCAACGGATATAGGGCACTG
TAGGAAGCACTTACAGGCCCTTCGTAGTTTGCTGGGGGTTCACGTAATAG
GCGTGGAATATCCCGGTTATGGTACTACTTACTCTTCTGGAAAACCATCA
GAAGACAACATTAATGAATCAGTCCTCAAGGTTTATAATTTCATCTGCAA
GCAAATGCATTGGCCTCCTGAAAATATCATCGTTGTTGGAAGATCAATAG
GCTCTGGTCCAGCAACAAAACTTGCCAGAGAAGTTCCGCTGGGGGGTCTG
ATTCTCATTTCAGCTTTCAAAAGCATAACAAGCATTGCTAGAAAATTTGT
TGGGGCAGGCATAGCAAATTTAGTTATCGCCAACCAGTATGACAACCTGA
CTGCTATTCGCCAAGTGCACTGTCCTGTTCTATTTCTTCATGGATCAGAG
GATGATTTTGTACCATTTCAACACTGTCAGGATCTCTACAATGCTTGCGC
TAGCAGCCGCAAAACCCTGGCACCTTTATTAGGCTACGGACACAATCACT
TTGACTGGACT
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