mRNA_H-akashiwo_Contig952.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig952.16.1
Unique NamemRNA_H-akashiwo_Contig952.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig952.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig952contigH-akashiwo_Contig952:426920..428276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size528
Hectar predicted targeting categoryother localisation
Exons3
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.0407283-CDS-H-akashiwo_Contig952:426920..4270431681388057.0407283-CDS-H-akashiwo_Contig952:426920..427043Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 426921..427043 -
1681388057.0522149-CDS-H-akashiwo_Contig952:427602..4277861681388057.0522149-CDS-H-akashiwo_Contig952:427602..427786Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 427603..427786 -
1681388057.061659-CDS-H-akashiwo_Contig952:428058..4282761681388057.061659-CDS-H-akashiwo_Contig952:428058..428276Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 428059..428276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig952.16.1prot_H-akashiwo_Contig952.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig952 426921..428276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig952.16.1

>prot_H-akashiwo_Contig952.16.1 ID=prot_H-akashiwo_Contig952.16.1|Name=mRNA_H-akashiwo_Contig952.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=175bp
FNQARDLEVSASDPCVKGKLPLCTKCAPQDDLCQMSCVSFKAVPIKFEDF
DGVKALARAGGPSLSEKKTFLDRATYYCDAGPSHSYGGGGNGEPSLGADV
LDTIQRQAHEKAADQANAAQDLSLLANACGVYDVVFTAADYAGNLGWRHA
ELATTVVRTRAAWGGAARGRLGPPS
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mRNA from alignment at H-akashiwo_Contig952:426920..428276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig952.16.1 ID=mRNA_H-akashiwo_Contig952.16.1|Name=mRNA_H-akashiwo_Contig952.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1357bp|location=Sequence derived from alignment at H-akashiwo_Contig952:426920..428276- (Heterosigma akashiwo CCMP452)
TTCAACCAAGCTAGAGACCTGGAGGTTTCAGCAAGCGACCCTTGTGTGAA
AGGCAAATTGCCGCTTTGCACTAAGTGTGCCCCTCAGGATGATTTGTGCC
AGATGTCATGTGTCTCATTCAAAGCTGTGCCCATCAAATTTGAAGACTTT
GATGGAGTCAAAGCACTTGCTCGTGCAGGGGGGCCCTCCCTGAGTGAGAA
GAAGACTTTTTTGGACAGGTGTGGTGGCATGCTAAAGTTTGAATGGCCCA
CTTTTTTCTATCCATACGTGTTGGTGATGAATATATTTATCATCATCAAA
TCCTTTGGATTTTGGTGTGTTTTTTGGTGTTTTAAAAGTATTGTAGGTCC
CTGATCTCTGCTGAATCCTGTATTGAAGCTACATACAGTTGCCTGCAAGA
CAGAGAAACGAAAACAACAGCAACACATAATATGTACTGCCTAAAGTAAC
CCCCCCCCCCCCACCGTCCCTTTTGTATCCTTCACTTCAGGGCAACGTAC
TACTGTGATGCAGGGCCCTCACACAGTTATGGAGGTGGTGGAAATGGTGA
GCCATCCCTTGGAGCAGATGTGTTGGACACAATCCAACGGCAAGCACACG
AGAAAGCAGCAGACCAAGCCAATGCTGCACAGGACCTCAGTCTTCTTGCC
AACGCCTGCGGCGTTTACGACGTGGTAAGCCGCAGCCTGCTCCACCCCTC
CTCTGGGCGCTATGCGAGGAACGAGCAGCTGAACCTTCTCCCCCGTCCGT
CCGGCATACCAACAGACCGCACCACTTTCCTTTTGAGAGTCAACTTCCAT
TTTTTTTTTCTACTGTGGTCCTATTATATCTCACTTGCTGCGTCATCGCG
AATGCCAGTCCCGCCTTGTTGTTCAGAACCGCCTGCCGGCCTTTCAACCC
ACCATCACCATCCCTCTTTCGTTCGGCCAATCGTTCTCTTTTTTTCCCCT
ATGTTCATACGATCATGCAATAGGCTCCTCTCACATTCTGACCCACGACG
CCGCTCGCCTTCTTGCACCCGCCTTGGCATCCGAACCCTTCTTTTTTTTT
TCCGTCGAACGATGCTGCGGAAGTTGCCCCGGGGCCCACTTGAACAACCG
CCGCAAGGCTCTACGCACACGCTCTGTCGTTGCCCCGTGGCGGCCTCGTC
ATCTCTTTCTGCTCGTACGATGGGTGCGCGACCCGGGCGCCGCCGCCGCC
GCCGCCCCGCCGGCCGGCCCCGGCATGGGGCAGGTGTTCACGGCGGCGGA
CTACGCGGGGAACCTGGGCTGGCGGCACGCGGAGCTGGCCACGACGGTGG
TGCGGACCCGCGCGGCCTGGGGGGGGGCGGCGCGGGGCCGCCTGGGCCCC
CCAAGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig952:426920..428276-

>mRNA_H-akashiwo_Contig952.16.1 ID=mRNA_H-akashiwo_Contig952.16.1|Name=mRNA_H-akashiwo_Contig952.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig952:426920..428276- (Heterosigma akashiwo CCMP452)
TTCAACCAAGCTAGAGACCTGGAGGTTTCAGCAAGCGACCCTTGTGTGAA
AGGCAAATTGCCGCTTTGCACTAAGTGTGCCCCTCAGGATGATTTGTGCC
AGATGTCATGTGTCTCATTCAAAGCTGTGCCCATCAAATTTGAAGACTTT
GATGGAGTCAAAGCACTTGCTCGTGCAGGGGGGCCCTCCCTGAGTGAGAA
GAAGACTTTTTTGGACAGGGCAACGTACTACTGTGATGCAGGGCCCTCAC
ACAGTTATGGAGGTGGTGGAAATGGTGAGCCATCCCTTGGAGCAGATGTG
TTGGACACAATCCAACGGCAAGCACACGAGAAAGCAGCAGACCAAGCCAA
TGCTGCACAGGACCTCAGTCTTCTTGCCAACGCCTGCGGCGTTTACGACG
TGGTGTTCACGGCGGCGGACTACGCGGGGAACCTGGGCTGGCGGCACGCG
GAGCTGGCCACGACGGTGGTGCGGACCCGCGCGGCCTGGGGGGGGGCGGC
GCGGGGCCGCCTGGGCCCCCCAAGC
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