mRNA_H-akashiwo_Contig95.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig95.5.1
Unique NamemRNA_H-akashiwo_Contig95.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A7S3XKX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKX0_HETAK)

HSP 1 Score: 193 bits (490), Expect = 8.990e-55
Identity = 108/201 (53.73%), Postives = 138/201 (68.66%), Query Frame = 1
Query:   22 EGVPIQNRSSHTAARSFIRYGCTTLLVLAGIFLLAKTTSEQQHNPSSPFLMMAEWNSKSDEKANDLVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAMAI 624
            EG PI+++      R F  +   +LL L GIF  A T   Q   P     +  E NSKS  +   L LEV NKYSERDG+PGQQYSWLE  +L EP+ P+TFRVV+HD  K+Y+WE+Y++  GD+E IF GHEFV+SF +EDVW D+F+VVNEYE +   E  ++KIS+S  AKLY RYVRREIRNL  ED +E+LDAM++
Sbjct:    3 EGTPIKDKPR--GLRIFASFAALSLL-LVGIFAYASTFKLQNSAP-----LATELNSKSHARTATLTLEVKNKYSERDGTPGQQYSWLEDAMLAEPHLPSTFRVVDHDPLKDYEWELYDE-AGDIEKIFYGHEFVYSFEREDVWHDRFLVVNEYETN--LEAQTKKISNSGSAKLYVRYVRREIRNLFLEDLDEILDAMSL 192          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A7S4DDY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY2_HETAK)

HSP 1 Score: 123 bits (309), Expect = 1.080e-29
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  295 LLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFV-VVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAMAI 624
            LL EP+QP+TFRVV+HD  +EY+WE+Y+    +LE  F GHEFV+SF +E VW+D F+ VVNEYE D  A+ ++R I+ SA A++Y RYVRREIR L  EDR+EVLD MA+
Sbjct:    1 LLAEPHQPSTFRVVHHDPTREYEWELYDGT--NLEQKFTGHEFVYSFEREHVWNDNFILVVNEYETD--ADDHARSITDSASAQVYVRYVRREIRTLFPEDRDEVLDTMAL 107          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.260e-10
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  190 SKSDEKANDLVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEF-----VHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            S S E    L    +N Y  RDG PGQ Y WL+   LVEP++ TT  V       EY+W+V    TGD      G E        + A+  + S +  ++   E++ A     R++  + + K    YVRREIR+L +++REE+LDAM
Sbjct:  103 SSSGESDQALAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPREGFEYRWDVRPTCTGDSCTSSSGGESSPIQAAGAVAEVVLTSLEENMITLEEVNVADGKVVRRLEETVMVK----YVRREIRSLTDDEREELLDAM 246          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.130e-10
Identity = 47/134 (35.07%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  217 LVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            L  + +N Y  RDG P Q Y WL+G  L+EP++ TT  V +     +Y WEV    T D  N+        +        D  + V E   D       R++    + K    YVRREIR L +E+REE+LDAM
Sbjct:  121 LSFQALNFYHIRDGKPAQDYPWLKGVKLIEPHRETTLSVSSPRDGHDYIWEVRAGET-DEANLVATARGAEAVVTLTTLDDNVITVKEVHPDGHIV---RRLDEVVMVK----YVRREIRTLTDEEREELLDAM 246          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-9
Identity = 42/134 (31.34%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  217 LVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            L  + +N Y  RDG P Q Y WL+   L+EP++ TT  V +     +Y WEV + +T D E +        +     +  D  + + E   D        +I       +  +YVRREIR L +++REE+ DAM
Sbjct:  127 LAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRDGYDYIWEVRSGDTDDTE-VRASARGAEALITLTILDDNVITLKEVNSDG-------EIMRQLDELVMVKYVRREIRTLTDDEREELFDAM 252          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.060e-9
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  217 LVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNT--GDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            L  E  N Y  RDG P Q Y WL+   L+EP++ TTF V +     +Y+W V+  +   G+L     G E        D   +  VV+ E + D       ++       K+  +YVRREIR L +++REE+ DAM
Sbjct:  166 LSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRDGFDYRWRVFAGSAAEGELCTEATGPESTVVLTTLD---ENEVVLEEVDADGTVVRRRQE-------KVMVKYVRREIRTLTDDEREELFDAM 291          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A7S3XQ55_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ55_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 9.520e-9
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  235 NKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAMAI 624
            N Y+   G  G QY WLEG  L EPY+ T  +V++      Y W++     G  E    G E + +++ ++V + K ++    E      G S +++   + K    YVRREIR L  EDR E+LD M I
Sbjct:    1 NTYTRAYGRAGVQYPWLEGKKLAEPYRETELKVLDPIPGATYTWQI----EGSEELTSVGDERL-TYSWKNVGTYKLILTETLE-----NGESTQVASDVVVK----YVRREIRALFPEDRNELLDTMKI 116          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.700e-8
Identity = 45/136 (33.09%), Postives = 63/136 (46.32%), Query Frame = 1
Query:  217 LVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTG--DLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            L  E  N Y  RDG P   Y WL+   L+EP++ TTF V +     EY+W V   +    DL     G E V       V  D  + + E   +         ++     K+  +YVRRE+R L +E+REE+ DAM
Sbjct:  129 LSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRDGFEYRWTVRGADADKDDLRAEASGAETVMILT---VLDDTIIDLEEVNTETGV------VARRLEEKVMVKYVRRELRTLTDEEREELFDAM 255          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.130e-8
Identity = 42/143 (29.37%), Postives = 66/143 (46.15%), Query Frame = 1
Query:  217 LVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDK--------FVVVNEYEID-DAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLDAM 618
            L    +N Y  RDG P Q Y WL+   L+EP++ TT  V       EY+W+V       + +  P   F      E+V +          F  + E  +  +    ++  ++     K+  +YVRREIR L +++REE+ DAM
Sbjct:  133 LSFTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRDGFEYRWKVLLGAPVSITDSAPASSFEEEGVTEEVVATASGAEAVVVFTHLGENSVSLEEVNSDTGVVTRRLQEKVMVKYVRREIRTLTDDEREELFDAM 275          
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.050e-7
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  214 DLVLEVVNKYSERDGSPGQQYSWLEGNLLVEPYQPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDKFVVVNEYEIDDAAEGNSRK---ISHSAIAKLYTRYVRREIRNLDEEDREEVLDAMAI 624
            DL     N+Y+ R    G  Y WL+  +LVEP++ TT  VV+      Y W V      D +   P      S       + K+ VV E     +  G++ +   +  S+  +++++YVRREIR+L +++R+++ DAM +
Sbjct:  120 DLSFIASNEYTRRGDIIGLGYPWLQDRILVEPFRTTTLEVVSPKEGMVYSWTVRPVTEVDEQEETPAEYAGPSVDVVFERAPKYQVVLEERASGSGGGDAGEEAAVVRSSDVEVFSKYVRREIRSLFDDERDQMFDAMKV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig95.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S3XKX0_HETAK8.990e-5553.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DDY2_HETAK1.080e-2958.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LC28_ECTSI3.260e-1035.14TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5K485_9PHAE6.130e-1035.07TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JRR4_9PHAE1.500e-931.34TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LC46_ECTSI2.060e-933.82Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A7S3XQ55_HETAK9.520e-933.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5J7R8_9PHAE1.700e-833.09TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC42_ECTSI3.130e-829.37TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5K0B2_9PHAE1.050e-729.29TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig95contigH-akashiwo_Contig95:104787..105410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size624
Hectar predicted targeting categorysignal anchor
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.3295374-UTR-H-akashiwo_Contig95:104786..1047981681388055.3295374-UTR-H-akashiwo_Contig95:104786..104798Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig95 104787..104798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.3450184-CDS-H-akashiwo_Contig95:104798..1054101681388055.3450184-CDS-H-akashiwo_Contig95:104798..105410Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 104799..105410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig95.5.1prot_H-akashiwo_Contig95.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig95 104799..105410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig95.5.1

>prot_H-akashiwo_Contig95.5.1 ID=prot_H-akashiwo_Contig95.5.1|Name=mRNA_H-akashiwo_Contig95.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=204bp
MEHEGVPIQNRSSHTAARSFIRYGCTTLLVLAGIFLLAKTTSEQQHNPSS
PFLMMAEWNSKSDEKANDLVLEVVNKYSERDGSPGQQYSWLEGNLLVEPY
QPTTFRVVNHDIAKEYQWEVYNKNTGDLENIFPGHEFVHSFAQEDVWSDK
FVVVNEYEIDDAAEGNSRKISHSAIAKLYTRYVRREIRNLDEEDREEVLD
AMAI
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mRNA from alignment at H-akashiwo_Contig95:104787..105410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig95.5.1 ID=mRNA_H-akashiwo_Contig95.5.1|Name=mRNA_H-akashiwo_Contig95.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=624bp|location=Sequence derived from alignment at H-akashiwo_Contig95:104787..105410+ (Heterosigma akashiwo CCMP452)
GTCGTAGAGAGTATGGAGCATGAGGGAGTGCCGATCCAAAACAGGTCTTC GCACACAGCTGCGAGGTCCTTCATCAGATATGGCTGCACCACTCTCCTGG TGTTGGCAGGAATTTTTCTCCTGGCAAAGACAACTTCTGAACAACAGCAC AACCCTTCTTCTCCTTTTTTGATGATGGCCGAATGGAACTCCAAATCTGA TGAAAAGGCCAATGACCTCGTACTGGAAGTGGTGAACAAGTATTCTGAAA GGGATGGGAGCCCTGGTCAGCAATATTCCTGGCTGGAAGGTAATTTATTG GTCGAACCTTATCAGCCGACAACTTTTCGAGTGGTGAATCATGACATCGC CAAAGAGTACCAGTGGGAAGTGTACAACAAAAACACCGGTGATCTAGAGA ACATTTTTCCTGGCCATGAGTTTGTGCACTCATTTGCCCAAGAAGATGTT TGGAGTGACAAGTTTGTTGTGGTGAATGAATACGAGATTGATGATGCAGC AGAGGGCAACTCGAGGAAAATAAGCCACAGCGCAATTGCCAAGCTGTACA CCAGGTACGTGAGAAGAGAAATCAGAAACCTTGATGAGGAAGACCGCGAG GAGGTTCTTGATGCCATGGCAATC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig95:104787..105410+

>mRNA_H-akashiwo_Contig95.5.1 ID=mRNA_H-akashiwo_Contig95.5.1|Name=mRNA_H-akashiwo_Contig95.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=612bp|location=Sequence derived from alignment at H-akashiwo_Contig95:104787..105410+ (Heterosigma akashiwo CCMP452)
ATGGAGCATGAGGGAGTGCCGATCCAAAACAGGTCTTCGCACACAGCTGC
GAGGTCCTTCATCAGATATGGCTGCACCACTCTCCTGGTGTTGGCAGGAA
TTTTTCTCCTGGCAAAGACAACTTCTGAACAACAGCACAACCCTTCTTCT
CCTTTTTTGATGATGGCCGAATGGAACTCCAAATCTGATGAAAAGGCCAA
TGACCTCGTACTGGAAGTGGTGAACAAGTATTCTGAAAGGGATGGGAGCC
CTGGTCAGCAATATTCCTGGCTGGAAGGTAATTTATTGGTCGAACCTTAT
CAGCCGACAACTTTTCGAGTGGTGAATCATGACATCGCCAAAGAGTACCA
GTGGGAAGTGTACAACAAAAACACCGGTGATCTAGAGAACATTTTTCCTG
GCCATGAGTTTGTGCACTCATTTGCCCAAGAAGATGTTTGGAGTGACAAG
TTTGTTGTGGTGAATGAATACGAGATTGATGATGCAGCAGAGGGCAACTC
GAGGAAAATAAGCCACAGCGCAATTGCCAAGCTGTACACCAGGTACGTGA
GAAGAGAAATCAGAAACCTTGATGAGGAAGACCGCGAGGAGGTTCTTGAT
GCCATGGCAATC
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