mRNA_H-akashiwo_Contig95.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig95.27.1
Unique NamemRNA_H-akashiwo_Contig95.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig95.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig95contigH-akashiwo_Contig95:1612118..1612445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCB5
PFAMs2OG-FeII_Oxy,DIOX_N
Model size141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000118
EggNOG OGsCOG3491@1|root,2QR0G@2759|Eukaryota
Descriptiondioxygenase activity
Cds size141
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.192406-CDS-H-akashiwo_Contig95:1612117..16121861681388055.192406-CDS-H-akashiwo_Contig95:1612117..1612186Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 1612118..1612186 +
1681388055.2028303-CDS-H-akashiwo_Contig95:1612373..16124451681388055.2028303-CDS-H-akashiwo_Contig95:1612373..1612445Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 1612374..1612445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig95.27.1prot_H-akashiwo_Contig95.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig95 1612118..1612445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig95.27.1

>prot_H-akashiwo_Contig95.27.1 ID=prot_H-akashiwo_Contig95.27.1|Name=mRNA_H-akashiwo_Contig95.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=47bp
EQHRPISGCPPEPDPKWRFFWRMDGNRTSGCDSGHQEQVENITTTL*
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mRNA from alignment at H-akashiwo_Contig95:1612118..1612445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig95.27.1 ID=mRNA_H-akashiwo_Contig95.27.1|Name=mRNA_H-akashiwo_Contig95.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=328bp|location=Sequence derived from alignment at H-akashiwo_Contig95:1612118..1612445+ (Heterosigma akashiwo CCMP452)
GAACAGCATCGGCCTATATCTGGATGTCCACCAGAGCCTGACCCGAAGTG
GAGGTTTTTCTGGCGGATGGTGAGGCAcCCCGACTGGGATTTGCTTGTTT
CATGTTGATGGTTGAGCAAACAAACATAATATCAGATTGAAACTTTCCCA
GCGCAAATTCATATTTCATCTTTCATTGCTACACCTGACTTTCCCAGCTA
TAGACAGAGTACAGGTGCATATTTTATCTTCTGTTGCTGCTACCTCTGTC
ACTTAGGATGGAAACAGGACATCGGGGTGCGACAGTGGCCACCAAGAACA
AGTAGAAAACATAACTACAACACTGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig95:1612118..1612445+

>mRNA_H-akashiwo_Contig95.27.1 ID=mRNA_H-akashiwo_Contig95.27.1|Name=mRNA_H-akashiwo_Contig95.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=141bp|location=Sequence derived from alignment at H-akashiwo_Contig95:1612118..1612445+ (Heterosigma akashiwo CCMP452)
GAACAGCATCGGCCTATATCTGGATGTCCACCAGAGCCTGACCCGAAGTG
GAGGTTTTTCTGGCGGATGGATGGAAACAGGACATCGGGGTGCGACAGTG
GCCACCAAGAACAAGTAGAAAACATAACTACAACACTGTAA
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