mRNA_H-akashiwo_Contig95.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig95.19.1
Unique NamemRNA_H-akashiwo_Contig95.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig95.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig95contigH-akashiwo_Contig95:946693..947722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size215
Hectar predicted targeting categoryother localisation
Exons3
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.1397738-CDS-H-akashiwo_Contig95:946692..9467161681388055.1397738-CDS-H-akashiwo_Contig95:946692..946716Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 946693..946716 +
1681388055.154246-CDS-H-akashiwo_Contig95:947067..9471631681388055.154246-CDS-H-akashiwo_Contig95:947067..947163Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 947068..947163 +
1681388055.1652412-CDS-H-akashiwo_Contig95:947629..9477221681388055.1652412-CDS-H-akashiwo_Contig95:947629..947722Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 947630..947722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig95.19.1prot_H-akashiwo_Contig95.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig95 946693..947722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig95.19.1

>prot_H-akashiwo_Contig95.19.1 ID=prot_H-akashiwo_Contig95.19.1|Name=mRNA_H-akashiwo_Contig95.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
RSLDFKKEALEVLFNSPEPLTSAQLPSVLKACGEIGDYKKLSYFFEQMED
KKIWNVYGYTSFMKACGRWE*
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mRNA from alignment at H-akashiwo_Contig95:946693..947722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig95.19.1 ID=mRNA_H-akashiwo_Contig95.19.1|Name=mRNA_H-akashiwo_Contig95.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-akashiwo_Contig95:946693..947722+ (Heterosigma akashiwo CCMP452)
CGGAGCTTGGATTTCAAGAAAGAGGTGAATGTTTTTTTTTGTTTCTCCTC
CCCCTGTAGTAATCAGATCTTCCTCTTGTCGTGCAATGCGCTCCTCTCCC
ATCCTGAGAAGCAATAATCACTGCCTGTTGTCTTCTTGCATTCGCAATGG
TATTGATAAATACTTTATCAGCTGCCCTACGCATTCGAATGCATGTGGCC
TCCCTTACCCCCCGTACCGGCCGGCACCCAGTCACTCACTCGTAGAAGAC
AGAGGGCAATGATCATGTAATCTGAAATACAACACTTCTTCTAAGGAAGC
CAATGCATTGATGAATTATGCTCTGTCTTTTCACTTCTTTTTCATTCTTT
TCCATCTATTTTGCATATTTCTTAGGCTCTGGAAGTGCTCTTCAACTCTC
CAGAGCCTTTGACCTCCGCTCAACTACCTTCTGTGCTGAAAGCATGCGGT
GAAATCGGTGATTATAAAAAGGTATGTACTACATCATTGAAAATGACTTA
TAGTCAACACTATACTTGTGTGCAGGTTTTAAAGGGTGGTTTTGGTGAAT
GGTCTGGTACCTCTCCCATCCTGCTGGTTCTGTAAGTACAGCATAATACA
TCAAATAATACATATAAGTAGCATGCACACGATCCATCATGATGATAAAA
GTCCCAAAACTATTATGTAGTACTACTAGTATTAGTATTTATTTGTTCCC
AAAGACTTGTGTAGTCTCACACACAAGCATGTATTATGTAACACACCTGT
CATCAAAGCCGCCAAGGTCAAAACATGCATCTGACTTGAGGAGAGGAAGG
GCACCCCATCATGCACAATAATGAAAAACACAAAAAAGCAACATGTTGTT
GTGGTGATTAGTACTATACGGCACCATATAAAATAGCAACGAGTGAAATG
CTGCTTTGTTGTGTTCTCGATGGTGTGTTGTTTACAGCTCTCTTACTTCT
TTGAACAAATGGAGGATAAAAAAATCTGGAACGTTTACGGTTATACCTCT
TTCATGAAGGCGTGTGGAAGGTGGGAATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig95:946693..947722+

>mRNA_H-akashiwo_Contig95.19.1 ID=mRNA_H-akashiwo_Contig95.19.1|Name=mRNA_H-akashiwo_Contig95.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig95:946693..947722+ (Heterosigma akashiwo CCMP452)
CGGAGCTTGGATTTCAAGAAAGAGGCTCTGGAAGTGCTCTTCAACTCTCC
AGAGCCTTTGACCTCCGCTCAACTACCTTCTGTGCTGAAAGCATGCGGTG
AAATCGGTGATTATAAAAAGCTCTCTTACTTCTTTGAACAAATGGAGGAT
AAAAAAATCTGGAACGTTTACGGTTATACCTCTTTCATGAAGGCGTGTGG
AAGGTGGGAATAA
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