mRNA_H-akashiwo_Contig95.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig95.13.1
Unique NamemRNA_H-akashiwo_Contig95.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig95.13.1 vs. uniprot
Match: A0A7S3YIX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIX8_HETAK)

HSP 1 Score: 107 bits (268), Expect = 4.500e-28
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:   81 AGLFLPRAAVGEPALLWLVGCYERCVDEMSRISSSKHAEKDEGIALLNEMQTLL 242
            A LFLPRAAVGEPALLWLVGCYERCVDEMSRISSSKHAEKDEGIALLNEMQTLL
Sbjct:   16 ARLFLPRAAVGEPALLWLVGCYERCVDEMSRISSSKHAEKDEGIALLNEMQTLL 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig95.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YIX8_HETAK4.500e-2898.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig95contigH-akashiwo_Contig95:318836..324317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size242
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.004433-CDS-H-akashiwo_Contig95:318835..3189051681388055.004433-CDS-H-akashiwo_Contig95:318835..318905Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 318836..318905 +
1681388055.0181189-CDS-H-akashiwo_Contig95:319875..3199401681388055.0181189-CDS-H-akashiwo_Contig95:319875..319940Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 319876..319940 +
1681388055.0314198-CDS-H-akashiwo_Contig95:324210..3242431681388055.0314198-CDS-H-akashiwo_Contig95:324210..324243Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 324211..324243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.045751-UTR-H-akashiwo_Contig95:324243..3243171681388055.045751-UTR-H-akashiwo_Contig95:324243..324317Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig95 324244..324317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig95.13.1prot_H-akashiwo_Contig95.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig95 318836..324243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig95.13.1

>prot_H-akashiwo_Contig95.13.1 ID=prot_H-akashiwo_Contig95.13.1|Name=mRNA_H-akashiwo_Contig95.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
GAGEPAVPGRVGRRGARAGLAHGGDLLLGCSSRGRRWASPRCSGWLVAMK
DVLMK*
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mRNA from alignment at H-akashiwo_Contig95:318836..324317+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig95.13.1 ID=mRNA_H-akashiwo_Contig95.13.1|Name=mRNA_H-akashiwo_Contig95.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5482bp|location=Sequence derived from alignment at H-akashiwo_Contig95:318836..324317+ (Heterosigma akashiwo CCMP452)
GGGGCCGGCGAGCCTGCAGTACCTGGAAGGGTTGGACGGCGTGGTGCTCG
GGCGGGACTCGCTCACGGAGGTACGTTGTTATTGTCCCTTTTTACCTCTT
TTTACCTCTTCAATTGTCCGATTTCCGATTTCCGATTTCGGAAACGGCTT
TCATTTCCGAGACGGAGTAAGTACTATACCTACTTACTCGTATTGTGGTG
AGGTGTTGGATTTGACAGAAAAGCCGTTCCCGACATCAGTGAGTATAATA
GCTCCACATTGCCATAGAGGCCTTGTGTCAAAAGGTTTTCGAATCATTAC
AAGATCCGACGTGGACAGCGCTGTGTTTCTAGCATCCCACCAGCGAGGCT
GGTGGCTGGCTTTCATCAACACGCCTTGTCCGTGTAAGATTTAAACCAGA
TGAAGATGGTATGTGGTCGTAGTGCCCATGTGGGGGGGGCGGGCGGGGGC
GGGGCGCCCCTTTCTTCCCCCCACTCCAACCGTGCTGTTCCTCTTTCCTT
CCCCCCCTCCCTACCGCCTTCTCCTTCTGCCTTTGACTTTGGGGGCCTTG
GCGGGGGGGGCGGGGGGCAAGCGTGTTCGTCTTGGTAGGAAGAGGCAGAT
CATGGGCGCCTCCCGCCGTGCAGTTGATCTATAACCATTATCCCCCTGCT
CTGTCACGCAAGCCTTGCGGGTTTGTGTCTTTGAAATCGTGATCTGTGTT
TCTCTAATGGGGGAGGAGTCGTTGTGGTGGGCGGGCGTGGGTCTTCAAGA
TGAGTCCAGCACCAAAAAAAAGTCCCCCTCGACCCGAAGGGCATAAAACG
AGAACAAATCGTCAAAGTTGCACTGGCTCGAAAGACGTGGATCCAGCGCA
CGAGACTTCAATACAAAAGAGCCGGTTCAGGGAAACCAAAAAATATATAT
ATGTAAACGAAAAACTGAAATGGAGATGGAAAGAAGAAGAGGAGGAAGGA
GAATTTTTTGGGGTAGAGGTAGAGGATGACCATTTGCGCAGTGCCTCCCG
AAGGCTTGAGTCCTTCATTTGCATTGGTCCGTCCCAACAGGTGATCTCTT
GCTGGGCTGTTCCTCCCGCGGGCGGCGGTGGGCGAGCCCGCGCTGCTCTG
GCTGGGTGGGCGAGGGGCGGGGGGGGGGCGTGCCGTCGGTTTCGGCGGCG
GCCGCTCTGTTCCCGCCGCCGCCGCTTGGTGTCGCTCGGTCGAACATGGG
TTCCCCCCTCTGCTGAGCTGTGCGCAGCTTTTGGAGGCGGGTCCACGTTT
AGGCGTACTTACTTAAAGCAAAGAAAAAACGGTTCGGGTGGGCTGCTGCC
ACCTCCGCACTGCTCATGTTGGTGTTTGCATTAAACTCTCATTTCTGTCT
GCTAAAGCTTCTGCTGTGCCTGGTGGGGGgaGGGAATATGGCGTTGGAGC
TGCTTTCCGATGGGGGCGGAATCCTCTTGGCGCTGTTGTTGCAGAGCTTC
TTGGTCAAGACTGTCTAATATATCTGGATTCTACGTGTGACTAGGGATTA
TCTGTTTCTTGTGTGGCAAATTGGTGCAGCCTTCAGTTGGTGCCAAGAAT
CCCAGAGATATGGAGCAGCCGACATACATGATTTTATCCCACTCAGAAAA
CAGCTCCAGCGTCTCTTTAAGCAGTTGAAATTTTAGGGGGAGGGGGGAGA
AAAAGGCAAATGACTTTGGCATAGGTATTAGCAAAAACCTATTCAAACTA
CTAATCTAACAACCATTTTCTTTGGTTTATGCTTACTCTACTCTATGGTA
GTTGTAAGACCTCCCCCCCCCAAAAAAAAAGTTGCTCGCACATCATTTTT
TTTTTTTTAATATTGGAATCGCACATCATAGTTTCATGATCTTGTATTTC
ATGCGCTATAGCAGTAATTTTGGCCTTGGCCTTCAAGCTATTATGGTGTC
CGTGAAGCATCAGACGGGGCTAACGTCTTCCTTTTTGGAAAATCCTATAT
GCCCTGATGGATGGTCTTCTTATTACCAAGTAATTAATACATTATTTCAT
TTTACTCTCGTTCCATTTCCCACATAGTGTTTTTTTTTTTTTTTTTTTTT
CTAGTAGTACACCATGCTTCATGCTCTTCATGATGGTGCCGGTTTGTCGC
CATATCTTTGATAGTTCCGTCAGGCGTGGTGCATTTCCGGGTCTAGGGCC
GCCTGGTCCGTGTTCATTCTCGTCTCACGTCGGCATTCCCCCGCTTATTT
CTCAATCGTTCTTGTTCTCGAAGTTCGAAGTGCGCGCGAGGAGAGTGAGT
TACCTCTTCGAAGGGCTCGAACCCACGACCTCTTGCTTGCTCCGGAAGTC
GAACTTTCGAACAATTGAGCTTATTACTTATCAATATTGCTATTACAACA
AACATCAACTTTTGCCCCCCCTGCGTTTTAACAGTAAAGTGACAATAAAT
GCCTTTTATCTGAATAGTTGCTAACACCTCCTATATAATACCCATAATTG
TCCATGCGTTGTGTGTACGGTTGTCTTCTAAGAGGAAAGTACCCTTGTAT
GCGCTGCGCGGCGCTGCTATTGGAGAGTGGGGCGCTGAAGGTTGTTGTTT
CCTTCCATGTGCTCGGGATTCTATAGCTCTCTATCTTCTAGCATCTTTTG
AAAGTTGCCAGGGAGTTGGGGGGGGGGGAGGTCAACTGGTTTTTCAGTTT
ATGTTCCTGTGGGCGCGCTGCAGCAAGCCGAGCTGATCTCCAAGGGCTTG
GGGCAGAGGGGTCATCAAGTTGAGAGCCATGCCATGCCCTCGACCACCCA
GCAGCTTGCAGGTGCATCCAATGGCAGCTTGTTGTTCTCTTCTACTGTTG
AAACGCCAACAAAGATAGGCTTGGAACAAATGCCCTGGGATCGGTATACT
CTTCTACATCGAGGCAAATAACCTTTACCATATTGATGATTGTAACGAAC
GGCATGCAAGAAGCACTCACGATAGAGCAGCACACTTTCTCTAGAATGCT
AGAGCATCACAACAAGAAAGAAAGGGAACTCTACTTCTTCTTCTCCTCTG
TTATCTTTGGGGCAGGGAGTAGATATAACAAACACAACCATGTCATGATG
ACATTGAAATGTGAAGAAGGCAGAAGAAAGAAGTGGATGATCACTATGAG
CAGCTCGCTCCGTCTCCGGTTGATGCATCACCATCGCTCCTCCAGGCTAT
CGATCGTGCTTCTTCCCAAGGCCAAACAGCCGGCCCTACCGTGCGGCTGG
CAAAGAACCATAGACTGTTATGCAGCAGGCCACCACATCGCATGCTTTTT
TCAACACTTGCCCAGTCTTCATGGAGTCAAGAGACAAAGTGGCAACTCAC
AAGGAATGAAACATGATCATTTTGAATTTGATTTTGGGCTTGTCTCAAAA
GACTCGAGTTTCGGCCAATGCCAGGCCACCATTAGCTTAGAAGCTGAGGC
TTGTCGTCAGTTTTGCTGGATTGTGATCCGTTGTGAGCCTTCAAACCATG
CTCCTGTTGTTGCCATGAGCCAGCGGTCATCATGACCCTTCCAGAAAGAA
TTGAAAATATGATGAAGAAGAAAACAGATCTCTTCATGCTGTGCTCCCAC
CACTTCTGCATGATCGCTGCTGCCCTCTGCCTGTTACTGCGTGTCTGGAC
TGCCATTTTTCTTTTGTTTTCTCCGCGAAATTTTATTGCCCGCCATTGCA
GATTCGGTATGCCAAAAAAAATAAAATAAATAAACTTTCTCGTTCAAAAA
CTTGAATATGTGAAACTTGAAATCATTTCTGTGCCCCCTGATTCCACTGG
TTTTGACGGCGTAGAAAATTGTCCTACTTTTGGGGATCCAGGACTAAGTG
CTTTCTGGGGTATTTTGTGGACTGTCAGGGGAAGGGCCACTTGTGCTGGA
ATAACGAGTAGAGGGCAGAAGTGATCAGAGTTGAAGTGTTATCATCCTCT
CGAATATAGTGGCCAGAGTTGGTAGTAGTACTGAAATAGGCTGATAGTTT
TGACGGTGACCCTTACCATCTTGCAACTCTTGGGAAACTCAACAGCTGTC
TTTGCACAGTGCTTGGGGAGATGTGGGCTGACCCCATCAGAGCCAAACGA
CTTCAGCTCATTGAAAGAGTGGAGTACCTCAGCAACCATGGCACGCGCGA
GCTTGAAACTTTTCAGCCATTTGTTGGCGCCGTCCGGCAGCTGCTGTAGT
GGTGGCACCTGCTTGTTCTCCTCCCCAGTGTTGCAGGACCAATAAGTCAG
CTAGACATACTACTAATCACCTAGCCAATGCCAGGGCAAGGCGAGCACTC
AACATGATGATAAGGAAACGCCTCAGCACATCATAATGTCTGAAGTGACC
GAAAGAAGACCGCTCAAATGGTTGTGTAGCTCAAGGAAGAATCAGGGGTT
ACGAGAATGTAACCAAGGAACATTCAGCGAGTGTTGTTGTTGCCCAACGA
ACAGCAAAAAAGCCGAGATCATCGCTAAGAACGTGAAGCTACAGTGTGAT
CCTGAGTAGTGAACACACATGTAGCATAACACTGTAAAAAAACATTCTCA
TATATTCTCAAATAAAAACAAAATAACTGAACAAGCCTTGATCTGAATAC
AAATAATCTGGTGATCACAAACACACATTGTACAACTGAATCCACCTTAA
GGGCCCACTAAAGAGACGCTTCCCCTGACATCTGGTAGCAATTGACGCTT
CACCTGACACCAGGCAGGCTCATTTTATAGCAGCAAAATAGTCCAAGGCG
AAGGGTTTACGGTCCACTTGTACTTGCTTGTCCCAGAAACATATTTGGTG
AGCTTCCGGAAGTCCCTGGAGCCAGACCTTCTTCTGGCAACAAGACGGAT
CTTTAGCCGGAGCACGTGATGACCATATGCCTTTCTGCAGATTCGTTTGT
AGATTTTTGGACTCCCTTCTGATGGCCGCAGGGCATCGACTTGCAAGACC
AGCATGCCTTTTCCGGCGCTGCACCCTCTCACACTTGGCATCACACTAGG
GCAAAAGGGTCTAGACAGCGTTGGAACTGAACTTGGGACATACTTATCGG
TCAACTCCTGCAGCTTGGCCGTCACCATGCCCATGGCCCACAGCCTCCTG
CACACCTATAGCCCCTCAAACTTGAAGCTGGTCCTCTTCACCTCCTTTTC
AGTTCACCCCATCATAATATCATAACATCTAATCCAATAAACTGCCACTT
CTAAACTACTACTGCTACACCATTGCCTTGAACAAGTCCTCCATGGCCCT
CTCCATTACTCCAAAGGCCAGCCCCAAGGAAATCTTGCTTCTACCCTACA
ATGTATAAAAGCCTACCTACAACCAAAGACAAAACAGTAAGAAAGAAAAT
GTATTGCTTTTGCAATCACACATATTAAAAACAAGCGGTGTTGGTGTTAT
TTATGTCACTTTTTCATTTCCACAGTTGGTTGCTATGAAAGATGTGTTGA
TGAAATGAGCAGAATAAGCTCCAGCAAACATGCAGAAAAGGACGAAGGAA
TAGCGCTGCTTAATGAAATGCAAACTCTGTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig95:318836..324317+

>mRNA_H-akashiwo_Contig95.13.1 ID=mRNA_H-akashiwo_Contig95.13.1|Name=mRNA_H-akashiwo_Contig95.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig95:318836..324317+ (Heterosigma akashiwo CCMP452)
GGGGCCGGCGAGCCTGCAGTACCTGGAAGGGTTGGACGGCGTGGTGCTCG
GGCGGGACTCGCTCACGGAGGTGATCTCTTGCTGGGCTGTTCCTCCCGCG
GGCGGCGGTGGGCGAGCCCGCGCTGCTCTGGCTGGTTGGTTGCTATGAAA
GATGTGTTGATGAAATGA
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