mRNA_H-akashiwo_Contig948.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig948.4.1
Unique NamemRNA_H-akashiwo_Contig948.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: K8ETT3_9CHLO (Thioredoxin domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ETT3_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 5.360e-10
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  156 HAIYDDVSDSSVVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYYVDAGERNPYTGAPWRRGDLFPGGTSTADALRQTVL 533
              +YD  +       SSE+F+EKVL +RD WVV+F  P  + C  MAPAF   A  L++  I FGA+D   ++ +     I    PAI  +      NPY     +  + + G   TA ALR+  +
Sbjct:   93 RTLYDPNNSGVFGFQSSEEFKEKVLETRDVWVVQFIAPGCQPCKDMAPAFSRAALSLESVNIKFGAIDIAGNEDLGRSMQISRV-PAIVGFGGKKTWNPYRKIAQKLSNEYRGDALTARALREFAV 217          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: K3WQ24_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ24_GLOUD)

HSP 1 Score: 64.3 bits (155), Expect = 7.170e-9
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  177 SDSSVVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYY----VDAGERNPYTGA 464
            S+S VV L+ ++F + VL S D W+VEFY P   +C  +AP +E+ A DLK   +  GA+DATAH++      I   +P IK +      A +   Y GA
Sbjct:  150 SNSDVVTLTDDNFDDLVLNSGDVWLVEFYAPWCGHCKALAPEWEQAASDLKG-AVKLGALDATAHEQKAAEYGIR-GFPTIKVFGPSASSASDAQDYQGA 247          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: A0A0B2W322_TOXCA (Protein disulfide-isomerase n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W322_TOXCA)

HSP 1 Score: 61.6 bits (148), Expect = 6.130e-8
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  189 VVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYYV 431
            V+ L+  +F E VL S+DAW+VEFY P   +C  + P ++E A +LK   +  GA+DAT HQ + +   I   +P IKY+ 
Sbjct:  158 VIELTDSNFDELVLHSKDAWMVEFYAPWCGHCKALKPHWDEAATELKGK-VKLGALDATVHQVMASRFGIK-GFPTIKYFA 236          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: UPI0014556AFF (dnaJ homolog subfamily C member 10-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014556AFF)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-7
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  183 SSVVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYY 428
            SSV V++  +F+EKVL S++ WVV+FY P    C    P +E++AKD+ ++ +  G VD T +Q I    SI   +P+++ Y
Sbjct:  692 SSVEVVTRSNFREKVLRSKEPWVVDFYMPQCMPCQQYMPEYEQVAKDVSSF-VHVGKVDCTQNQNICQQASIN-YFPSVRIY 771          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: A0A0M3HYK3_ASCLU (Protein disulfide-isomerase n=3 Tax=Ascaris TaxID=6251 RepID=A0A0M3HYK3_ASCLU)

HSP 1 Score: 59.3 bits (142), Expect = 3.880e-7
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  189 VVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYYV 431
            V+ L+  +F E VL S+DAW+VEF+ P   +C  + P +++ A +LK   I  GA+DAT HQ + +   I   +P IKY+ 
Sbjct:  158 VIELTDSNFDELVLHSKDAWMVEFFAPWCGHCKALKPHWDQAATELKGK-IKLGALDATVHQVMASRFGIK-GFPTIKYFA 236          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: A0A0P5N3Z6_9CRUS (Sulfhydryl oxidase n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5N3Z6_9CRUS)

HSP 1 Score: 59.3 bits (142), Expect = 4.200e-7
Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  117 FVSGLLSALLTRCHAIYDDVSDSSVVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYG--ILFGAVDATAHQKIVTGESIP-PAYPAIKYY 428
            F++ L+ A+     A+Y D     +V ++  DF+  ++A+ +AW++EFY     +CI  APAF ++A D+K +G  I  GAVD    + I          YP +K++
Sbjct:   18 FINPLVDAVPLSNSALYKD--SDPIVQMNIADFKSTIMATSNAWLIEFYSSWCGHCIDFAPAFIQLANDVKGWGKVIKVGAVDCAKDENIPLCRDFEIMGYPTLKFF 122          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: A0A183EEN9_9BILA (Protein disulfide-isomerase n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EEN9_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 5.180e-7
Identity = 35/114 (30.70%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  189 VVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYYVDAGERNPYTGAPWRRGDLFPGGTSTADALRQTV 530
            V+ L+  +F +KVL S+D W+VEFY P   +C  + P +++ A +L    +  GA+DAT HQ   +   I   +P IKY+          G+     + + GG ++AD +   +
Sbjct:  103 VIELTDSNFDQKVLHSKDLWLVEFYAPWCGHCKALKPHWDQAASELHGK-VKLGALDATVHQSTASRFGIQ-GFPTIKYFAP--------GSSDSDAEDYNGGRTSADIVEYAL 206          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: A0A8C5PBL7_9ANUR (DnaJ homolog subfamily C member 10 n=3 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PBL7_9ANUR)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-6
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 3
Query:  198 LSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYY 428
            L+ E F EKVLA +D WV++FY P    C   AP FE +A+ +K   +  G VD  AH  +    +I  AYP +K+Y
Sbjct:  669 LTPESFNEKVLAGKDHWVLDFYAPWCGPCQSFAPDFERLARMVKGK-VKAGKVDCQAHGILCQSTAIR-AYPTVKFY 743          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: UPI0015ACC2E9 (LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 10-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ACC2E9)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-6
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  162 IYDDVSDSSVVVLSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGIL-FGAVDATAHQKIVTGESIPPAYPAIKYY 428
            IYDD  D  ++ LS  DF + VL S D W V FY P   +C  +APA+ E+A++LK  G+L  GAV+      +   ++I  +YP++  Y
Sbjct:  117 IYDD--DPEIITLSRNDFVQSVLESSDFWFVNFYSPQCSHCHHLAPAWRELARELK--GVLRIGAVNCEDDWMLCRQQNIH-SYPSLIIY 201          
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Match: UPI001ABE71FC (dnaJ homolog subfamily C member 10 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABE71FC)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-6
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  198 LSSEDFQEKVLASRDAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTGESIPPAYPAIKYYVDAGER 446
            L+ E F EKVL S+D W+++FY P    C   AP FE +A+ LK   +  G VD  A+ +I     I  AYP +K+Y   G +
Sbjct:  672 LTPESFNEKVLESKDHWLLDFYAPWCGPCKSFAPEFEFVARLLKGK-VKAGKVDCQAYGQICQSAGIR-AYPTVKFYPHMGSK 752          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig948.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8ETT3_9CHLO5.360e-1034.13Thioredoxin domain-containing protein n=1 Tax=Bath... [more]
K3WQ24_GLOUD7.170e-939.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0B2W322_TOXCA6.130e-840.74Protein disulfide-isomerase n=2 Tax=Toxocara canis... [more]
UPI0014556AFF3.260e-739.02dnaJ homolog subfamily C member 10-like isoform X1... [more]
A0A0M3HYK3_ASCLU3.880e-739.51Protein disulfide-isomerase n=3 Tax=Ascaris TaxID=... [more]
A0A0P5N3Z6_9CRUS4.200e-731.78Sulfhydryl oxidase n=3 Tax=Daphnia magna TaxID=355... [more]
A0A183EEN9_9BILA5.180e-730.70Protein disulfide-isomerase n=2 Tax=Gongylonema pu... [more]
A0A8C5PBL7_9ANUR2.020e-641.56DnaJ homolog subfamily C member 10 n=3 Tax=Leptobr... [more]
UPI0015ACC2E92.020e-638.89LOW QUALITY PROTEIN: dnaJ homolog subfamily C memb... [more]
UPI001ABE71FC2.020e-639.76dnaJ homolog subfamily C member 10 n=2 Tax=Bufo Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig948contigH-akashiwo_Contig948:90130..91279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog41875.XP_007514428.1
PFAMsThioredoxin
Model size538
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue3.82e-11
EggNOG OGs28P21@1|root,2QVNH@2759|Eukaryota,380SV@33090|Viridiplantae,34MAR@3041|Chlorophyta
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.766938-UTR-H-akashiwo_Contig948:90129..902181681388054.766938-UTR-H-akashiwo_Contig948:90129..90218Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig948 90130..90218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.7788272-CDS-H-akashiwo_Contig948:90218..904001681388054.7788272-CDS-H-akashiwo_Contig948:90218..90400Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 90219..90400 +
1681388054.7886322-CDS-H-akashiwo_Contig948:90599..906821681388054.7886322-CDS-H-akashiwo_Contig948:90599..90682Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 90600..90682 +
1681388054.798104-CDS-H-akashiwo_Contig948:90860..909391681388054.798104-CDS-H-akashiwo_Contig948:90860..90939Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 90861..90939 +
1681388054.8070154-CDS-H-akashiwo_Contig948:91176..912791681388054.8070154-CDS-H-akashiwo_Contig948:91176..91279Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 91177..91279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig948.4.1prot_H-akashiwo_Contig948.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig948 90219..91279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig948.4.1

>prot_H-akashiwo_Contig948.4.1 ID=prot_H-akashiwo_Contig948.4.1|Name=mRNA_H-akashiwo_Contig948.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=149bp
MLRIIATAIFVSGLLSALLTRCHAIYDDVSDSSVVVLSSEDFQEKVLASR
DAWVVEFYDPLNENCIMMAPAFEEIAKDLKNYGILFGAVDATAHQKIVTG
ESIPPAYPAIKYYVDAGERNPYTGAPWRRGDLFPGGTSTADALRQTVLG
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mRNA from alignment at H-akashiwo_Contig948:90130..91279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig948.4.1 ID=mRNA_H-akashiwo_Contig948.4.1|Name=mRNA_H-akashiwo_Contig948.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1150bp|location=Sequence derived from alignment at H-akashiwo_Contig948:90130..91279+ (Heterosigma akashiwo CCMP452)
CTGCCACTATTAATGTTAACTGAAGCATTGGTATTGGCTTCGTGAGCTGG AAGTATTCATTGAGTTTTTCTCTTGCCCGTGCGTTGAAGATGCTTCGCAT TATTGCGACAGCAATCTTCGTTAGTGGGCTATTGTCTGCCCTACTGACGA GGTGTCATGCGATTTACGATGATGTGAGTGATAGCTCCGTCGTGGTGCTG TCTTCTGAGGACTTTCAGGAAAAAGTACTGGCGTCAAGGGATGCCTGGGT TGTTGAATTCTATGACCCTTTGTGAGTAAGGGATGTGTTTGCTTGCTATT GAATCCAATCACTGTGCAAGAAATGAAATCTTGTTGTTCACCGAGCATTT CTTCTGGGTGCTTGCTCTGcCCCTTCCTTTAGCTCTGTCCCTTTGCACGT ATAGTCGTGATTCTGGGAACAGCGCACATTTTTTTTTTTTCCGCTCTTGG AATTTTCTGCTCAAAACCAGGAATGAAAACTGCATCATGATGGCCCCAGC ATTTGAAGAAATAGCCAAGGATCTCAAAAATTATGGGATTCTATTCGGTG CAGGTGTGGAATACCTCCTCATTATGCTATGCTCCTGCGCAGACTTCTTG CAAATGACTCAAATAGTTTGGGCATGGGCTACTGGAGGGCGTGTATAAAT GTGTCTGAAATATCTCTAGATGTAATCAAAGTTTGGTCCTTCTTTCTTTG CTTTCCTTCCCTGCTTGTTGTTTGAATGCAGTTGACGCCACCGCTCACCA AAAGATAGTTACTGGCGAAAGCATCCCGCCGGCATACCCAGCAATCAAGT ACTACGTTGAGTAAGTCTGTCTCACAAAGCTTTAGCCCTCCCCCCATCTT GTCCCTACCTTTTTCGTGTCACACTTTTAGTTTATTTTGCTGTCCAGTTA AGGTTAAAGGCATCACCGGCCAGCAATGCTTTTTTACGGAAACCAGACAT TCGATTTGTACTGGTGTGTGCGATGTTGCCCTTTCCTGGCCTTTCGGCGC CTCCCCCCTCTTGCCCCCCTTCTCACCCGCTCCCACCCGCCCGCCAGCGC CGGCGAGCGCAACCCGTACACGGGGGCCCCCTGGCGCCGGGGCGACCTGT TCCCGGGCGGCACGTCGACCGCGGACGCGCTGCGCCAGACGGTGCTGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig948:90130..91279+

>mRNA_H-akashiwo_Contig948.4.1 ID=mRNA_H-akashiwo_Contig948.4.1|Name=mRNA_H-akashiwo_Contig948.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=447bp|location=Sequence derived from alignment at H-akashiwo_Contig948:90130..91279+ (Heterosigma akashiwo CCMP452)
ATGCTTCGCATTATTGCGACAGCAATCTTCGTTAGTGGGCTATTGTCTGC
CCTACTGACGAGGTGTCATGCGATTTACGATGATGTGAGTGATAGCTCCG
TCGTGGTGCTGTCTTCTGAGGACTTTCAGGAAAAAGTACTGGCGTCAAGG
GATGCCTGGGTTGTTGAATTCTATGACCCTTTGAATGAAAACTGCATCAT
GATGGCCCCAGCATTTGAAGAAATAGCCAAGGATCTCAAAAATTATGGGA
TTCTATTCGGTGCAGTTGACGCCACCGCTCACCAAAAGATAGTTACTGGC
GAAAGCATCCCGCCGGCATACCCAGCAATCAAGTACTACGTTGACGCCGG
CGAGCGCAACCCGTACACGGGGGCCCCCTGGCGCCGGGGCGACCTGTTCC
CGGGCGGCACGTCGACCGCGGACGCGCTGCGCCAGACGGTGCTGGGG
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