mRNA_H-akashiwo_Contig948.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig948.12.1
Unique NamemRNA_H-akashiwo_Contig948.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A0A6V1NVE6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVE6_HETAK)

HSP 1 Score: 148 bits (374), Expect = 3.470e-43
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 2
Query:    2 GKDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRTAESI 217
            GKDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRTAESI
Sbjct:   50 GKDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRTAESI 121          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A0A7S3XLQ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLQ1_HETAK)

HSP 1 Score: 100 bits (249), Expect = 3.390e-24
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 2
Query:    5 KDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRTAESI 217
            +  DP  MP+GG   EV  W  ++P+  LY VTIPDCKKP+LKK+Y ATLLLST+WLSVLTFC+IRTAESI
Sbjct:   80 EHRDPFTMPSGGW-AEVFFWFVSIPYLLLYKVTIPDCKKPRLKKYYMATLLLSTLWLSVLTFCLIRTAESI 149          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: UPI00065B4E12 (probable sodium/potassium/calcium exchanger CG1090 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B4E12)

HSP 1 Score: 56.2 bits (134), Expect = 7.520e-8
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 2
Query:   56 LLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMI 199
            +LWAA+LP   L  VT+PDC++ +L+K++  T ++S VWLSV +F M+
Sbjct:    1 MLWAASLPLCVLMYVTVPDCRRERLRKWFLLTFVMSLVWLSVFSFLMV 48          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: UPI0003F0A43F (sodium/potassium/calcium exchanger 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A43F)

HSP 1 Score: 55.5 bits (132), Expect = 3.190e-7
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:   56 LLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRT 205
            L+WA  LP + L+ +TIPDC+K K ++ +  T L+STVWLS+L++ ++ T
Sbjct:  315 LIWAIMLPMSILFFITIPDCRKTKWRQCFMLTFLMSTVWLSLLSYILVWT 364          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A0A0B6YM34_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YM34_9EUPU)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-6
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 2
Query:   56 LLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMI 199
            +LW  + P +FL  +++PDC+K +L+K++  T  +S VWLS+ +F M+
Sbjct:   66 VLWLVSFPISFLLYISVPDCRKDRLRKWFWVTFTMSLVWLSIFSFLMV 113          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: UPI001ED89153 (sodium/potassium/calcium exchanger 3 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89153)

HSP 1 Score: 52.8 bits (125), Expect = 2.860e-6
Identity = 21/62 (33.87%), Postives = 36/62 (58.06%), Query Frame = 2
Query:    5 KDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTF 190
            + H   R+P G G+     W A  P   ++ +TIPDC++P LK+++  T L+  VW+  L++
Sbjct:  321 EGHSVFRLPRGQGVLRGAAWVAVWPIHLVFFLTIPDCERPALKRWFPLTFLMCIVWIGSLSY 382          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: R1EKM5_EMIHU (Na+/Ca2+-K+ exchanger n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EKM5_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 3.870e-6
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 2
Query:   56 LLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIR 202
            ++W  +LP+A L+ VT+PDC+K + +K+Y  T  +S +W+  L+F M+ 
Sbjct:  245 VVWLVSLPYACLFLVTVPDCRKERWRKWYVVTFFMSVIWIMGLSFAMLE 293          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A0A8K0KID6_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KID6_LADFU)

HSP 1 Score: 52.0 bits (123), Expect = 3.890e-6
Identity = 20/62 (32.26%), Postives = 37/62 (59.68%), Query Frame = 2
Query:    5 KDHDPLRMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTF 190
            +++    +P G G+  VL W    P   ++ +TIPDC++P LK+++  T L+  VW+  L++
Sbjct:   19 EEYSVFSLPRGKGVWRVLSWIIVWPIHLVFFLTIPDCERPALKRWFPLTFLMCIVWIGSLSY 80          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A7RJP5_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RJP5_NEMVE)

HSP 1 Score: 51.6 bits (122), Expect = 4.580e-6
Identity = 20/59 (33.90%), Postives = 39/59 (66.10%), Query Frame = 2
Query:   41 GLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTFCMIRTAESI 217
            G  + ++W   LP + L+ +TIPDC++P+ +K+Y  T L+S +W++ L++ ++   E I
Sbjct:   11 GTLKAIIWIIMLPISCLFFITIPDCRRPRWRKWYFLTFLISVLWIAGLSYILVWMVEII 69          
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Match: A0A6J2X9F1_SITOR (sodium/potassium/calcium exchanger 3 isoform X1 n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X9F1_SITOR)

HSP 1 Score: 51.6 bits (122), Expect = 7.280e-6
Identity = 20/56 (35.71%), Postives = 34/56 (60.71%), Query Frame = 2
Query:   23 RMPAGGGLGEVLLWAAALPFAFLYSVTIPDCKKPKLKKFYAATLLLSTVWLSVLTF 190
            + P+  G    L+W    P   ++ +TIPDC+KPKLKK++  T L+  +W+  L++
Sbjct:  288 KWPSENGTFRQLMWIVTWPIRLVFFLTIPDCEKPKLKKWFPITFLMCIIWIGSLSY 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig948.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6V1NVE6_HETAK3.470e-43100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XLQ1_HETAK3.390e-2466.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00065B4E127.520e-847.92probable sodium/potassium/calcium exchanger CG1090... [more]
UPI0003F0A43F3.190e-746.00sodium/potassium/calcium exchanger 3-like n=1 Tax=... [more]
A0A0B6YM34_9EUPU1.580e-639.58Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
UPI001ED891532.860e-633.87sodium/potassium/calcium exchanger 3 n=1 Tax=Ischn... [more]
R1EKM5_EMIHU3.870e-638.78Na+/Ca2+-K+ exchanger n=3 Tax=Emiliania huxleyi Ta... [more]
A0A8K0KID6_LADFU3.890e-632.26Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A7RJP5_NEMVE4.580e-633.90Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A6J2X9F1_SITOR7.280e-635.71sodium/potassium/calcium exchanger 3 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig948contigH-akashiwo_Contig948:336739..337616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size220
Hectar predicted targeting categoryother localisation
Exons3
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.4180396-CDS-H-akashiwo_Contig948:336738..3368561681388054.4180396-CDS-H-akashiwo_Contig948:336738..336856Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 336739..336856 +
1681388054.4300492-CDS-H-akashiwo_Contig948:337385..3374581681388054.4300492-CDS-H-akashiwo_Contig948:337385..337458Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 337386..337458 +
1681388054.4411004-CDS-H-akashiwo_Contig948:337587..3376151681388054.4411004-CDS-H-akashiwo_Contig948:337587..337615Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 337588..337615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig948.12.1prot_H-akashiwo_Contig948.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig948 336739..337615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig948.12.1

>prot_H-akashiwo_Contig948.12.1 ID=prot_H-akashiwo_Contig948.12.1|Name=mRNA_H-akashiwo_Contig948.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
GQGPRPAADARGGRAGRGAPVGGRAAVRVPVQRDHPGLQEAQAEEVLRGH
AATVHSLALRADLLHDPDSRIDR
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mRNA from alignment at H-akashiwo_Contig948:336739..337616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig948.12.1 ID=mRNA_H-akashiwo_Contig948.12.1|Name=mRNA_H-akashiwo_Contig948.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=878bp|location=Sequence derived from alignment at H-akashiwo_Contig948:336739..337616+ (Heterosigma akashiwo CCMP452)
GGGCAAGGACCACGACCCGCTGCGGATGCCCGCGGGGGGCGGGCTGGGAG AGGTGCTCCTGTGGGCGGCCGCGCTGCCGTTCGCGTTCCTGTACAGCGTG ACCATCCCGGACTGCAAGGTGCGCTTCTGGTTGGGCGCTCAGGCGGCATG TTGTGTTTTATTCCAACAGGGTGTGTTTTCTTGGATTTGTTGCATTGTGT TGTGTACACTATGCCATCATATTTACTCTAGATTTTCCTGCTGACGCCTG TTTCCATAAGAAATTGCATCATTATTATTATTACATTACATAATAATATA GCCTGAAAAAGGCCGGTGGGGGAAGGAGCAGAGCCACCAGCCGTGGCTTG TAGTATAAGTAGCCAAAATGCAGCACAGTTGTCATGGAGTTATAATGATT TGAAAACCTTTGACATATCGCCTTCTTGGCAATGTGGAGCTATACTCACT GATGATGGAAGCTGTTTGTCTGTTTAAACCCAACACCCTGCAATCATAAT TGCTATGATATATATTTATACTTGGAATCTGTTGACAATGATGTAAGTTA TATGAAAATTATATGAATGATAGTGTGTTGCAGCAATAATAACAAAACAC AGCTTAATACCACAAATCCACCCGTCTTCATCCCATCCACCATGCAGAAG CCCAAGCTGAAGAAGTTCTACGCGGCCACGCTGCTACTGTCCACAGTCTG GCTCTCCGTGCTGACCTTCTGTGAGTCGTAGATATGCTTGCTTGCTCGTG AATCCAATCACAGTGAAAGAAATGAAACCTTTTTTCCAGCGATCATTTCT TCTGGGTGCTCAGCCTCTTCCATTTGCTCTACCTCCTTTGCATATATAGG CATGATCCGGACAGCAGAATCGATCGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig948:336739..337616+

>mRNA_H-akashiwo_Contig948.12.1 ID=mRNA_H-akashiwo_Contig948.12.1|Name=mRNA_H-akashiwo_Contig948.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig948:336739..337616+ (Heterosigma akashiwo CCMP452)
GGGCAAGGACCACGACCCGCTGCGGATGCCCGCGGGGGGCGGGCTGGGAG
AGGTGCTCCTGTGGGCGGCCGCGCTGCCGTTCGCGTTCCTGTACAGCGTG
ACCATCCCGGACTGCAAGAAGCCCAAGCTGAAGAAGTTCTACGCGGCCAC
GCTGCTACTGTCCACAGTCTGGCTCTCCGTGCTGACCTTCTGCATGATCC
GGACAGCAGAATCGATCGG
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