mRNA_H-akashiwo_Contig948.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig948.10.1
Unique NamemRNA_H-akashiwo_Contig948.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A7S4DI55_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI55_HETAK)

HSP 1 Score: 226 bits (576), Expect = 1.010e-72
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 3
Query:    3 MVEVLAGLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 377
            MVEVLAGLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM
Sbjct:    1 MVEVLAGLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 125          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A7S3YI58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI58_HETAK)

HSP 1 Score: 182 bits (463), Expect = 5.850e-55
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 3
Query:    3 MVEVLAGLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 377
            +V+++AG+G+F ALAYIML IS LCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFS  S TGISTVVGSVVFNTLMI+G SIWVSPT  I+L   +F RECVF+FA+L+M
Sbjct:   11 LVDIVAGVGYFLALAYIMLAISHLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSKTSDTGISTVVGSVVFNTLMILGCSIWVSPTRSIQLTAGSFGRECVFFFASLMM 135          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A7S4DGI0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGI0_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 5.010e-23
Identity = 52/98 (53.06%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   21 GLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGV 314
            G+ + F L  I + +S +C+EYFVA+L  +++ +NI  +VAG  LMAAGTS PELFAA++GLFFS +S  G+ TVVGSVVFN  +I+G ++ VSP+ V
Sbjct:   29 GVVYLFGLFLIFITMSMICDEYFVAALEEMIKQYNISADVAGTVLMAAGTSIPELFAALVGLFFSDSSDAGLGTVVGSVVFNGTVIVGGALLVSPSEV 126          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A812YC24_SYMMI (SLC24A1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YC24_SYMMI)

HSP 1 Score: 94.0 bits (232), Expect = 1.640e-22
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 3
Query:   60 GISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALV 374
            G++ +CEEYFV +L+++ E  NIP +VAGAT MAAG SSPE+F + I LF + +SA G+ TVVGS +FN ++I   S+  S TGV++L    F R+ V YF  L+
Sbjct:    4 GLALVCEEYFVPALNIMCEEANIPDDVAGATFMAAGASSPEMFTSFIALFVN-HSAIGVGTVVGSEIFNHMIICAGSVMYSSTGVLQLEKRVFSRDVVAYFVCLI 107          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A8J1VY18_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1VY18_9DINO)

HSP 1 Score: 99.0 bits (245), Expect = 1.230e-21
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   27 GFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 377
            G++  +AY+    +T+C+EYFV S+ VVVE F IP +VAGATLMA G + PELF   I +F + N   G+ T+VGS +FN L I+G SI   P   +++  A FVR+C FY  ++V+
Sbjct:  115 GWWLVIAYMFYAQATICDEYFVQSIKVVVETFGIPEDVAGATLMALGCNGPELFTNFIAIFITHNDV-GVGTIVGSEIFNLLCIVGGSIVACPVLPLEIEKAPFVRDCAFYALSIVL 230          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A8J1Z1V6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z1V6_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 8.070e-21
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   36 FALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 377
            F +AY+    +T+C+EYFV ++ V+VE F IP +VAGATLMA G + PELF   I +F + N   G+ T+VGS +FN L I+G SI   P   ++L  A FVR+C FY  +++M
Sbjct:  131 FVIAYMFYAQATICDEYFVQAIKVMVEKFQIPEDVAGATLMALGCNGPELFTNFIAIFITHNDV-GVGTIVGSEIFNLLCIVGGSIVACPKLPLELEKAPFVRDCAFYAVSILM 243          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A7S1Y1G9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1G9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.540e-20
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   27 GFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALV 374
            G    LA    G++ +C+E+FV +L+V+ +  N+P +VAGAT MAAG SSPE+F+++I LF + + A G+ TV+GS VFN L I+G S+  +   V+ L     +REC FY  AL+
Sbjct:   66 GIIVVLAITFWGLAVICDEFFVPALNVLCDALNVPDDVAGATFMAAGASSPEVFSSLIALFVTKSEA-GVGTVIGSEVFNMLCIVGGSVLYAENHVLNLDWRVLLRECTFYLLALI 180          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A7S4I7_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S4I7_NEMVE)

HSP 1 Score: 90.9 bits (224), Expect = 8.510e-19
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   42 LAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALVM 377
            + Y+ L ++  C+E+FV SL+V++E   +  +VAGAT MAAG S+PELF + IG F    S  GI T+VGS VFN L +IG     S  GV++L      R+C+FY  AL++
Sbjct:  115 MCYMFLALAIACDEFFVPSLTVIIEKLELKEDVAGATFMAAGGSAPELFTSFIGTFIDPKSNVGIGTIVGSAVFNVLFVIGMCAMFSK-GVLELTWWPLFRDCIFYSLALII 225          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A226E1S9_FOLCA (Sodium/potassium/calcium exchanger Nckx30C n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226E1S9_FOLCA)

HSP 1 Score: 89.4 bits (220), Expect = 2.960e-18
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 3
Query:   48 YIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAALV 374
            Y+ + ++ +C+E+FV +L V++EVF+I  +VAGAT MAAG S+PELF ++IG+F S +   GI T+VGS VFN L +IG     S T V+ L      R+C FY  AL+
Sbjct:  134 YMFVALAIVCDEFFVPALDVIIEVFDIQDDVAGATFMAAGGSAPELFTSVIGVFISHDDV-GIGTIVGSAVFNILFVIGMCALFSRT-VLHLTWWPLFRDCTFYSVALI 240          
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Match: A0A6J1QZN4_9HYME (sodium/potassium/calcium exchanger Nckx30C isoform X1 n=29 Tax=Formicidae TaxID=36668 RepID=A0A6J1QZN4_9HYME)

HSP 1 Score: 89.4 bits (220), Expect = 2.980e-18
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   36 FALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGATLMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVSPTGVIKLATATFVRECVFYFAAL 371
            F + Y+ + ++ +C+E+FV SL V++E F+I  +VAGAT MAAG S+PELF +IIG+F S +   GI T+VGS VFN L +IG     S T V+ L      R+C FY A+L
Sbjct:  122 FGVVYMFVALAIVCDEFFVPSLDVIIEKFDIADDVAGATFMAAGGSAPELFTSIIGVFVSFDDV-GIGTIVGSAVFNILFVIGMCAIFSRT-VLSLTWWPLFRDCTFYSASL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig948.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DI55_HETAK1.010e-72100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YI58_HETAK5.850e-5580.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DGI0_HETAK5.010e-2353.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812YC24_SYMMI1.640e-2249.52SLC24A1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A8J1VY18_9DINO1.230e-2146.15Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A8J1Z1V6_9DINO8.070e-2146.49Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S1Y1G9_9STRA9.540e-2043.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A7S4I7_NEMVE8.510e-1944.64Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A226E1S9_FOLCA2.960e-1846.79Sodium/potassium/calcium exchanger Nckx30C n=2 Tax... [more]
A0A6J1QZN4_9HYME2.980e-1847.32sodium/potassium/calcium exchanger Nckx30C isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig948contigH-akashiwo_Contig948:334658..335034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog45351.EDO41421
Preferred nameSLC24A2
PFAMsNa_Ca_ex
Model size377
Max annot lvl33208|Metazoa
KEGG koko:K13749,ko:K13750
KEGG TC2.A.19.4.1,2.A.19.4.2
KEGG Pathwayko04744,map04744
Hectar predicted targeting categorysignal peptide
GOsGO:0001654,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007275,GO:0007423,GO:0007600,GO:0007601,GO:0008150,GO:0008273,GO:0008324,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009987,GO:0010646,GO:0010647,GO:0010648,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015085,GO:0015267,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0019867,GO:0022803,GO:0022804,GO:0022821,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0023057,GO:0030001,GO:0030003,GO:0030955,GO:0031224,GO:0031226,GO:0031402,GO:0031420,GO:0032501,GO:0032502,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0046983,GO:0048167,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048749,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050805,GO:0050806,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060291,GO:0060292,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099177,GO:0099516
Exons1
Evalue1.4e-19
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota,38CGX@33154|Opisthokonta,3B994@33208|Metazoa
Descriptioncalcium, potassium:sodium antiporter activity
Cds size375
COG categoryPT
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.9246087-UTR-H-akashiwo_Contig948:334657..3346591681388054.9246087-UTR-H-akashiwo_Contig948:334657..334659Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig948 334658..334659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.9456866-CDS-H-akashiwo_Contig948:334659..3350341681388054.9456866-CDS-H-akashiwo_Contig948:334659..335034Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 334660..335034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig948.10.1prot_H-akashiwo_Contig948.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig948 334660..335034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig948.10.1

>prot_H-akashiwo_Contig948.10.1 ID=prot_H-akashiwo_Contig948.10.1|Name=mRNA_H-akashiwo_Contig948.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=125bp
MVEVLAGLGFFFALAYIMLGISTLCEEYFVASLSVVVEVFNIPPEVAGAT
LMAAGTSSPELFAAIIGLFFSSNSATGISTVVGSVVFNTLMIIGFSIWVS
PTGVIKLATATFVRECVFYFAALVM
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mRNA from alignment at H-akashiwo_Contig948:334658..335034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig948.10.1 ID=mRNA_H-akashiwo_Contig948.10.1|Name=mRNA_H-akashiwo_Contig948.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=377bp|location=Sequence derived from alignment at H-akashiwo_Contig948:334658..335034+ (Heterosigma akashiwo CCMP452)
ACATGGTGGAGGTTCTGGCTGGTTTGGGTTTCTTTTTTGCCCTTGCCTAT ATCATGCTTGGAATTTCTACGCTGTGTGAGGAATACTTCGTTGCATCTCT GAGCGTGGTGGTTGAGGTTTTCAATATCCCACCTGAAGTAGCCGGAGCGA CGTTAATGGCTGCTGGTACTTCATCACCTGAGCTATTTGCCGCCATCATC GGTCTTTTTTTCAGCTCGAATTCAGCCACAGGAATCTCAACGGTTGTTGG TTCTGTCGTCTTCAATACCTTAATGATCATCGGTTTCTCAATCTGGGTGT CTCCAACTGGAGTCATCAAGTTAGCGACTGCCACTTTTGTGAGGGAGTGT GTTTTTTACTTTGCGGCTCTAGTGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig948:334658..335034+

>mRNA_H-akashiwo_Contig948.10.1 ID=mRNA_H-akashiwo_Contig948.10.1|Name=mRNA_H-akashiwo_Contig948.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig948:334658..335034+ (Heterosigma akashiwo CCMP452)
ATGGTGGAGGTTCTGGCTGGTTTGGGTTTCTTTTTTGCCCTTGCCTATAT
CATGCTTGGAATTTCTACGCTGTGTGAGGAATACTTCGTTGCATCTCTGA
GCGTGGTGGTTGAGGTTTTCAATATCCCACCTGAAGTAGCCGGAGCGACG
TTAATGGCTGCTGGTACTTCATCACCTGAGCTATTTGCCGCCATCATCGG
TCTTTTTTTCAGCTCGAATTCAGCCACAGGAATCTCAACGGTTGTTGGTT
CTGTCGTCTTCAATACCTTAATGATCATCGGTTTCTCAATCTGGGTGTCT
CCAACTGGAGTCATCAAGTTAGCGACTGCCACTTTTGTGAGGGAGTGTGT
TTTTTACTTTGCGGCTCTAGTGATG
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