mRNA_H-akashiwo_Contig948.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig948.1.1
Unique NamemRNA_H-akashiwo_Contig948.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig948.1.1 vs. uniprot
Match: A0A814JN61_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814JN61_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 4.400e-8
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   10 VIVGGGIAGKSLAAFLRARGIPFTLLSGSSNAVLS-RPDFGIGIWSPALIKFKELGILPNLEREGSYIGVSGYK-AMNGQWLAQPSPL 267
            +I+GGGIAG +LA       IPF L   S+      R   GIG+W PAL     LGI   L  +G  +  +GY+ +  G WLA+P PL
Sbjct:   53 LIIGGGIAGLTLARACTIAKIPFKLFEQSTQLQSDKRAGTGIGLWGPALRALYTLGITDKLYSKGQLMICAGYRDSHTGNWLAKPHPL 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig948.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A814JN61_9BILA4.400e-840.91Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig948contigH-akashiwo_Contig948:24250..25178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_142628
PFAMsFAD_binding_3
Model size304
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.37e-11
EggNOG OGs2E4W7@1|root,2SBR5@2759|Eukaryota
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.4936657-CDS-H-akashiwo_Contig948:24249..243401681388054.4936657-CDS-H-akashiwo_Contig948:24249..24340Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 24250..24340 +
1681388054.5090632-CDS-H-akashiwo_Contig948:24732..248441681388054.5090632-CDS-H-akashiwo_Contig948:24732..24844Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 24733..24844 +
1681388054.5199637-CDS-H-akashiwo_Contig948:25078..251781681388054.5199637-CDS-H-akashiwo_Contig948:25078..25178Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 25079..25178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig948.1.1prot_H-akashiwo_Contig948.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig948 24250..25178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig948.1.1

>prot_H-akashiwo_Contig948.1.1 ID=prot_H-akashiwo_Contig948.1.1|Name=mRNA_H-akashiwo_Contig948.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MVNVIVGGGIAGKSLAAFLRARGIPFTLLSGSSNAVLSRPDFGIGIWSPA
LIKFKELGILPNLEREGSYIGVSGYKAMNGQWLAQPSPLGTDPSNGPALL
F
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mRNA from alignment at H-akashiwo_Contig948:24250..25178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig948.1.1 ID=mRNA_H-akashiwo_Contig948.1.1|Name=mRNA_H-akashiwo_Contig948.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=929bp|location=Sequence derived from alignment at H-akashiwo_Contig948:24250..25178+ (Heterosigma akashiwo CCMP452)
ATGGTGAATGTAATCGTCGGAGGTGGGATCGCAGGGAAAAGCCTCGCAGC
TTTTCTGCGTGCAAGAGGAATTCCTTTCACCTTACTATCAGGTAAAGGTC
ATTATCATTTTTTTTTTTTCAATCCTGGTCCAAACTAATGACTAATGCCA
TAGAAGACATGCCACCACTAAAAATATATACATTGTTTTTGTAATTCCGG
TCCATACTACTGCCACAGAAGACAGGGCACCAGTAAACATATATAACAAG
TGTGCTTCTGCTCACAACCCACACTCATTGTAGTCCCCCCCTCCTAGCAA
AGAATTATAAAGAGCCAAGACACAATGAAGTGAAAATGAAAGCAACAAAT
CAACAGTACAGAAGCAGGAAGTATAGACAACCATGAGGTCTTTGGTACCA
GCTGATCAGTAGATACTATGGGTGCCCACGAAGAAGGAGAAAATACATGT
TATTCAACCCTGCCATCCATGTTTCATTTACAGGGAGCTCTAATGCTGTA
TTGAGCCGTCCAGATTTTGGAATTGGAATATGGTCTCCAGCTCTGATAAA
GTTCAAGGAATTGGGGATCCTTCCCAATTTGGAGAGGGAAGGAAGGTGAT
TTGCAAAAAAAAAAAAAAACAATACCATAATTCAGCTAAAAAGAATTCAG
TTTGAAGCGTTCAACATACAACTAGATCACTATTCTGCCAATGTTTTATT
AGCAAGTAGTATCTTTACAGTACTACATAACATTTATATGGTGATTTTAT
TCATTCTTTATACATGCCTTACTGTAACCTTTTTCCTAAAAATATATTAA
TATATATAAATAAACTCTCTCTTTCAAAGTTACATCGGTGTGTCTGGCTA
CAAAGCCATGAATGGACAATGGCTTGCACAGCCATCCCCTCTGGGCACAG
ATCCATCTAATGGACCAGCGCTTCTTTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig948:24250..25178+

>mRNA_H-akashiwo_Contig948.1.1 ID=mRNA_H-akashiwo_Contig948.1.1|Name=mRNA_H-akashiwo_Contig948.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig948:24250..25178+ (Heterosigma akashiwo CCMP452)
ATGGTGAATGTAATCGTCGGAGGTGGGATCGCAGGGAAAAGCCTCGCAGC
TTTTCTGCGTGCAAGAGGAATTCCTTTCACCTTACTATCAGGGAGCTCTA
ATGCTGTATTGAGCCGTCCAGATTTTGGAATTGGAATATGGTCTCCAGCT
CTGATAAAGTTCAAGGAATTGGGGATCCTTCCCAATTTGGAGAGGGAAGG
AAGTTACATCGGTGTGTCTGGCTACAAAGCCATGAATGGACAATGGCTTG
CACAGCCATCCCCTCTGGGCACAGATCCATCTAATGGACCAGCGCTTCTT
TTC
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