mRNA_H-akashiwo_Contig947.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig947.7.1
Unique NamemRNA_H-akashiwo_Contig947.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig947.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig947contigH-akashiwo_Contig947:222406..222913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size510
Hectar predicted targeting categorysignal peptide
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.9898655-UTR-H-akashiwo_Contig947:222405..2225951681388053.9898655-UTR-H-akashiwo_Contig947:222405..222595Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig947 222406..222595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.0012486-CDS-H-akashiwo_Contig947:222595..2229131681388054.0012486-CDS-H-akashiwo_Contig947:222595..222913Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 222596..222913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig947.7.1prot_H-akashiwo_Contig947.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig947 222596..222913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig947.7.1

>prot_H-akashiwo_Contig947.7.1 ID=prot_H-akashiwo_Contig947.7.1|Name=mRNA_H-akashiwo_Contig947.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
MKAANTRMRKKRSRLASSCILVFCLLLLFDLGDCSRRLGTGAQPAEKVGC
RGVGYKSELVVSSATMSMCFEPVSPRDDSLVLVKCPAPLGPHYGVINPGA
QPFAAG
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mRNA from alignment at H-akashiwo_Contig947:222406..222913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig947.7.1 ID=mRNA_H-akashiwo_Contig947.7.1|Name=mRNA_H-akashiwo_Contig947.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=508bp|location=Sequence derived from alignment at H-akashiwo_Contig947:222406..222913+ (Heterosigma akashiwo CCMP452)
GCCGGGAGCTCCAGGGCGGGCGTCTTATACCGAAAGGAGCAGTGGCCTCG
GAGAGAACTTTGGCCGAAGGACATCGTCGGCGATGGGCGGTGGCCCGTGC
ATGTTTGTGAGTGCCGGGAAGGCCCGACGATGATACGAGGGCCAACACTA
TACACCGGTCTCGTATCAACAAGCTCAGAAATCACGCAATATGAAAGCGG
CCAACACGAGAATGCGAAAAAAAAGGTCCCGGCTGGCAAGCTCGTGCATC
TTGGTCTTCTGCCTTCTGCTATTGTTTGATCTTGGTGACTGCTCTCGAAG
ACTTGGCACTGGTGCTCAGCCTGCTGAGAAGGTGGGTTGCCGTGGTGTCG
GCTACAAGAGTGAATTGGTTGTAAGCTCTGCCACAATGTCCATGTGCTTT
GAGCCGGTCTCCCCGCGGGACGACTCCTTGGTGCTTGTGAAATGCCCCGC
CCCCCTTGGTCCACATTATGGAGTGATAAACCCGGGGGCCCAACCCTTTG
CAGCAGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig947:222406..222913+

>mRNA_H-akashiwo_Contig947.7.1 ID=mRNA_H-akashiwo_Contig947.7.1|Name=mRNA_H-akashiwo_Contig947.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig947:222406..222913+ (Heterosigma akashiwo CCMP452)
ATGAAAGCGGCCAACACGAGAATGCGAAAAAAAAGGTCCCGGCTGGCAAG
CTCGTGCATCTTGGTCTTCTGCCTTCTGCTATTGTTTGATCTTGGTGACT
GCTCTCGAAGACTTGGCACTGGTGCTCAGCCTGCTGAGAAGGTGGGTTGC
CGTGGTGTCGGCTACAAGAGTGAATTGGTTGTAAGCTCTGCCACAATGTC
CATGTGCTTTGAGCCGGTCTCCCCGCGGGACGACTCCTTGGTGCTTGTGA
AATGCCCCGCCCCCCTTGGTCCACATTATGGAGTGATAAACCCGGGGGCC
CAACCCTTTGCAGCAGGC
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