mRNA_H-akashiwo_Contig947.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig947.4.1
Unique NamemRNA_H-akashiwo_Contig947.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig947.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig947contigH-akashiwo_Contig947:183951..185080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categorysignal peptide
Exons3
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.8918374-CDS-H-akashiwo_Contig947:183950..1840841681388053.8918374-CDS-H-akashiwo_Contig947:183950..184084Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 183951..184084 -
1681388053.902599-CDS-H-akashiwo_Contig947:184533..1846941681388053.902599-CDS-H-akashiwo_Contig947:184533..184694Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 184534..184694 -
1681388053.91141-CDS-H-akashiwo_Contig947:184914..1850751681388053.91141-CDS-H-akashiwo_Contig947:184914..185075Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 184915..185075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.9203017-UTR-H-akashiwo_Contig947:185075..1850801681388053.9203017-UTR-H-akashiwo_Contig947:185075..185080Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig947 185076..185080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig947.4.1prot_H-akashiwo_Contig947.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig947 183951..185075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig947.4.1

>prot_H-akashiwo_Contig947.4.1 ID=prot_H-akashiwo_Contig947.4.1|Name=mRNA_H-akashiwo_Contig947.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
MASSRLSCCLFFSIALCWCIQLKCQAFTRNHVQLHQFGIPASKARPTTII
QATRNATETATSASKTVSLPVYAYGRKTSREVPFPITSVELLEDAAKTVR
QTSSNFPGISLLVIPSWRQHPLHFDPLLAASDIAGVDAKLCKVSCDICFT
L*
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mRNA from alignment at H-akashiwo_Contig947:183951..185080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig947.4.1 ID=mRNA_H-akashiwo_Contig947.4.1|Name=mRNA_H-akashiwo_Contig947.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-akashiwo_Contig947:183951..185080- (Heterosigma akashiwo CCMP452)
AATACATGGCTTCTTCTCGTCTCAGTTGTTGCCTGTTTTTTTCCATCGCG
TTGTGTTGGTGCATTCAACTCAAGTGCCAGGCTTTTACTAGAAATCATGT
CCAGCTACACCAGTTTGGCATCCCTGCATCGAAGGCCAGACCAACAACAA
TAATCCAAGCAACAAGGTGCTGCCATGGGCCGAAAGTTTTATCACAAAAG
AAATTACATAATTTGATTTCTCTGTGTTTGGTGATAGCACCACAGTACAA
CTAAAATATTCTAGGTGTTTCTTTCTTTCTTCTTTTCTTGTCATAAGAAT
ACTCACTTCTTGGGGGATTTCTCTTGAAGATTCTCTGCATCAATAAAAAC
CACAAATAGAGTTTCTTTTTTGCACCTTTATGAAAGAAATGCAACAGAGA
CTGCTACTTCTGCTTCCAAAACGGTTTCATTGCCAGTGTATGCGTACGGC
CGAAAGACCTCTAGAGAGGTACCATTCCCAATCACTAGTGTTGAATTGCT
TGAAGATGCAGCAAAAACAGTAAGGCAAACTTCAAGCAATTTTCCAGGCA
AGTTGTGAAAGTGCAAATGGCATAGTTCATATTACTTGTGCAAAAATAAA
GAAGAAGATGGTGGATGCTTTATGCAAACACATCACAAGGTACTGAATGT
ATGTACGTATTATATAATATTATATTTGATAATATTTGAATGCAGTGTAG
TTGGGGTGGAAACATTATCCACCACTGATCAACCTTTATAGAAAACAATG
ACCAAGCACCAATTATGATGCTGATTTTTTCCTGATGATCAATGTGCCAC
CTCTGCTGGTTGTTATTATAAATAAATGATGAACTACTTCTTTTTTAAGT
GTTTCAACAGTGCATTTTCATGCATTTTGTTGGGTAGTAAAACGGACGGA
GTAGGTTGTAGTTTGCTTGATGCTACTATTTGGTGCTATGTATCTCGAAT
CATGTAAGTTTTTTTTGTTTTCTGTTTGTCGGTTAAAAAAAAAAAGGCAT
TTCACTGCTGGTCATACCAAGTTGGAGGCAACATCCGCTGCACTTTGACC
CTTTGCTAGCGGCATCTGACATTGCTGGTGTTGATGCCAAATTATGCAAG
GTCAGTTGTGATATATGTTTTACCCTGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig947:183951..185080-

>mRNA_H-akashiwo_Contig947.4.1 ID=mRNA_H-akashiwo_Contig947.4.1|Name=mRNA_H-akashiwo_Contig947.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig947:183951..185080- (Heterosigma akashiwo CCMP452)
ATGGCTTCTTCTCGTCTCAGTTGTTGCCTGTTTTTTTCCATCGCGTTGTG
TTGGTGCATTCAACTCAAGTGCCAGGCTTTTACTAGAAATCATGTCCAGC
TACACCAGTTTGGCATCCCTGCATCGAAGGCCAGACCAACAACAATAATC
CAAGCAACAAGAAATGCAACAGAGACTGCTACTTCTGCTTCCAAAACGGT
TTCATTGCCAGTGTATGCGTACGGCCGAAAGACCTCTAGAGAGGTACCAT
TCCCAATCACTAGTGTTGAATTGCTTGAAGATGCAGCAAAAACAGTAAGG
CAAACTTCAAGCAATTTTCCAGGCATTTCACTGCTGGTCATACCAAGTTG
GAGGCAACATCCGCTGCACTTTGACCCTTTGCTAGCGGCATCTGACATTG
CTGGTGTTGATGCCAAATTATGCAAGGTCAGTTGTGATATATGTTTTACC
CTGTGA
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