mRNA_H-akashiwo_Contig933.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig933.1.1
Unique NamemRNA_H-akashiwo_Contig933.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig933.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig933contigH-akashiwo_Contig933:239194..239704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size234
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.0220742-UTR-H-akashiwo_Contig933:239193..2392801681388049.0220742-UTR-H-akashiwo_Contig933:239193..239280Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig933 239194..239280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.0343506-CDS-H-akashiwo_Contig933:239280..2393041681388049.0343506-CDS-H-akashiwo_Contig933:239280..239304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig933 239281..239304 +
1681388049.043628-CDS-H-akashiwo_Contig933:239436..2394931681388049.043628-CDS-H-akashiwo_Contig933:239436..239493Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig933 239437..239493 +
1681388049.0612166-CDS-H-akashiwo_Contig933:239638..2397041681388049.0612166-CDS-H-akashiwo_Contig933:239638..239704Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig933 239639..239704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig933.1.1prot_H-akashiwo_Contig933.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig933 239281..239704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig933.1.1

>prot_H-akashiwo_Contig933.1.1 ID=prot_H-akashiwo_Contig933.1.1|Name=mRNA_H-akashiwo_Contig933.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
MGCTSSKEASRLESGAASSAAASLSAQDDTRVAANPVAQANKGTTASMQ
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mRNA from alignment at H-akashiwo_Contig933:239194..239704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig933.1.1 ID=mRNA_H-akashiwo_Contig933.1.1|Name=mRNA_H-akashiwo_Contig933.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=511bp|location=Sequence derived from alignment at H-akashiwo_Contig933:239194..239704+ (Heterosigma akashiwo CCMP452)
GGTGGATGCGTATGATGATGGATATGTGTAGGGGAGTTAGAAAATTTTGT
TTGCCTTTGCATTACATACATACTCAAACTTCCCGGCATGGGTTGCACCA
GTTCTAAGGAGGTAAGCTTTTGCTGATGCTGCTGACGAGTCACGAGCTGC
CAGTTTCTGCAGTTTCTCCCCAGCACCACGCAGTACATACATAGATCACG
TGAAATCTTCATTCTTCACCCTATATTTAATGTTATCTGGCAGGCAAGCC
GTCTAGAATCGGGCGCGGCTTCGTCAGCGGCTGCGTCTTTGTCAGCGCAG
GTGTGATTACAGCACCAACACTCTACATACCTGTATTATCGCTCGTCAAA
CACAAAAATAAAGCGGAGTTTCCTCACATTTATCTTACGCTCTACATTCA
GAAATGCATCGATTCCCACTTTGTTCTGCGCCACTTTTCATTCAGGACGA
TACGCGTGTTGCTGCGAATCCTGTTGCGCAGGCGAATAAGGGCACCACTG
CTTCGATGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig933:239194..239704+

>mRNA_H-akashiwo_Contig933.1.1 ID=mRNA_H-akashiwo_Contig933.1.1|Name=mRNA_H-akashiwo_Contig933.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig933:239194..239704+ (Heterosigma akashiwo CCMP452)
ATGGGTTGCACCAGTTCTAAGGAGGCAAGCCGTCTAGAATCGGGCGCGGC
TTCGTCAGCGGCTGCGTCTTTGTCAGCGCAGGACGATACGCGTGTTGCTG
CGAATCCTGTTGCGCAGGCGAATAAGGGCACCACTGCTTCGATGCAG
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