mRNA_H-akashiwo_Contig931.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig931.4.1
Unique NamemRNA_H-akashiwo_Contig931.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig931.4.1 vs. uniprot
Match: D7FV62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV62_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.500e-8
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:   20 MDFSRPHTALISLQRRDGVSEELKELANRLLPNFEA---GASTESQLAARESILQMINMECWEGVAVGLLLAKSIVE 241
            MDFS  H AL SL+RR   S+ LK LA +L   F     G   ++Q    + +L+++  E WEGV+VG LLAKS+V+
Sbjct:    1 MDFSSTHAALRSLKRRPTTSDALKNLAEKLEGPFAGDGKGLGDDTQ-DVEQDVLELLGTEEWEGVSVGFLLAKSLVD 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig931.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV62_ECTSI6.500e-844.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig931contigH-akashiwo_Contig931:234747..235108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV62
PFAMsHEAT
Model size263
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.19e-09
EggNOG OGs28JXF@1|root,2QSBS@2759|Eukaryota
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.8148005-UTR-H-akashiwo_Contig931:234746..2347651681388048.8148005-UTR-H-akashiwo_Contig931:234746..234765Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig931 234747..234765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.8266869-CDS-H-akashiwo_Contig931:234765..2348711681388048.8266869-CDS-H-akashiwo_Contig931:234765..234871Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 234766..234871 +
1681388048.837156-CDS-H-akashiwo_Contig931:234971..2351081681388048.837156-CDS-H-akashiwo_Contig931:234971..235108Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 234972..235108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig931.4.1prot_H-akashiwo_Contig931.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig931 234766..235108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig931.4.1

>prot_H-akashiwo_Contig931.4.1 ID=prot_H-akashiwo_Contig931.4.1|Name=mRNA_H-akashiwo_Contig931.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
MDFSRPHTALISLQRRDGVSEELKELANRLLPNFEAGASTESQLAARESI
LQMINMECWEGVAVGLLLAKSIVELTPPEGE
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mRNA from alignment at H-akashiwo_Contig931:234747..235108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig931.4.1 ID=mRNA_H-akashiwo_Contig931.4.1|Name=mRNA_H-akashiwo_Contig931.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=362bp|location=Sequence derived from alignment at H-akashiwo_Contig931:234747..235108+ (Heterosigma akashiwo CCMP452)
TTTTTATTTTGTTGACAAAATGGACTTCTCAAGACCGCACACTGCATTGA
TAAGCCTTCAAAGAAGAGATGGAGTCTCTGAAGAGCTTAAAGAGCTTGCT
AATCGGCTTCTACCCAACTTTGAAGGTGCGGTCATTCGATTTGAAAATCT
TTTTATTTTTTTCAAAAATTAGTTCCATCGTCTATCTCTAAACAATCTGG
TGTATTTTCGCCTTTTTGAATTTAGCTGGCGCATCTACTGAGTCACAGCT
TGCAGCTAGGGAATCTATCCTCCAGATGATCAACATGGAGTGTTGGGAAG
GCGTCGCCGTTGGTCTTCTGCTCGCAAAGTCCATTGTGGAACTCACCCCC
CCAGAAGGAGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig931:234747..235108+

>mRNA_H-akashiwo_Contig931.4.1 ID=mRNA_H-akashiwo_Contig931.4.1|Name=mRNA_H-akashiwo_Contig931.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig931:234747..235108+ (Heterosigma akashiwo CCMP452)
ATGGACTTCTCAAGACCGCACACTGCATTGATAAGCCTTCAAAGAAGAGA
TGGAGTCTCTGAAGAGCTTAAAGAGCTTGCTAATCGGCTTCTACCCAACT
TTGAAGCTGGCGCATCTACTGAGTCACAGCTTGCAGCTAGGGAATCTATC
CTCCAGATGATCAACATGGAGTGTTGGGAAGGCGTCGCCGTTGGTCTTCT
GCTCGCAAAGTCCATTGTGGAACTCACCCCCCCAGAAGGAGAG
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