mRNA_H-akashiwo_Contig93.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.27.1
Unique NamemRNA_H-akashiwo_Contig93.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A7S3Y4U9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4U9_HETAK)

HSP 1 Score: 238 bits (607), Expect = 3.390e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:   10 VKAGLLQLPRAADVRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            VKAGLLQLPRAADVRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS
Sbjct:    5 VKAGLLQLPRAADVRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 121          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A7S4DBT4_HETAK (Hypothetical protein n=8 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBT4_HETAK)

HSP 1 Score: 191 bits (484), Expect = 1.210e-55
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 1
Query:   43 ADVRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            A+VRPQAWNVV+GD LHNCLDGMVIAVAFAGCG+SMGWTILGAVM+HEIPQEIADFFVLLDSGLSF QAL  NLFSG CAV GGIIVL+ P L AEGIGYMLLFGS
Sbjct:  374 AEVRPQAWNVVVGDALHNCLDGMVIAVAFAGCGNSMGWTILGAVMAHEIPQEIADFFVLLDSGLSFVQALLLNLFSGFCAVLGGIIVLTAPGLDAEGIGYMLLFGS 479          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK)

HSP 1 Score: 164 bits (415), Expect = 1.170e-45
Identity = 86/117 (73.50%), Postives = 94/117 (80.34%), Query Frame = 1
Query:   22 LLQLPRAADVR---PQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLS-TPSLTAEGIGYMLLFGS 360
            L  LPR   VR   PQAWN+VLGD + N LDGMVIAVAFAGC SSMGW + GAVMSHEIPQEI DFFVL+DSGLSFGQAL  NLFSG+CA+ GGIIVL    SLTA+ +GYMLLFGS
Sbjct:  376 LAALPRVGPVRGVRPQAWNLVLGDCICNGLDGMVIAVAFAGCDSSMGWIVFGAVMSHEIPQEIGDFFVLIDSGLSFGQALLANLFSGVCAIFGGIIVLLLNSSLTADVVGYMLLFGS 492          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A2R5GVZ1_9STRA (Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVZ1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.510e-22
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   55 PQAWNVVLGDGLHNCLDGMVIAVAFAGCGSS-MGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLS-TPSLTAEGIGYMLLFGS 360
            P  +N+++GDG+HN +DGM+IA+ FA C +S +GW  L +V+ HEIPQE+ DF +L+ +GLSF  AL FN  S L  V G IIVL+   S+      Y+L++G+
Sbjct:  422 PLVYNIIIGDGIHNLVDGMLIAIGFAACPTSAIGWITLASVVMHEIPQELVDFVILVRAGLSFKAALFFNFCSQLTCVVGAIIVLALNASIDETAQAYVLVYGA 525          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A2R5GRU2_9STRA (Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRU2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.870e-22
Identity = 48/104 (46.15%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   55 PQAWNVVLGDGLHNCLDGMVIAVAFAGC-GSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGI-GYMLLFGS 360
            P   N+V+GDG+HN +DGM+IA+ FA C GS++GW  LG+V++HE+PQE+ DF VL+ +GLSF  AL FN  S +  + G + VL+  +   E    Y+L++G+
Sbjct:  295 PLISNIVIGDGIHNLVDGMLIAIGFAACPGSAIGWITLGSVLAHELPQEMVDFVVLVRAGLSFKAALFFNFCSQMTCLIGAVAVLAVNATINESAQAYVLVYGA 398          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A5D6Y9S6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9S6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.560e-22
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   49 VRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            ++P A+ ++LGD  HN +DG++IA AF  C  S+G  ++ + + HEIPQE+ADF VL+DSG +  QA+ FN  S L + AG  I+LS  ++T   +G +L FG+
Sbjct:  428 IKPMAYIILLGDLFHNFVDGVLIATAFLACDDSLGLAVMASAILHEIPQELADFIVLVDSGFTKFQAIVFNFISALSSFAGAFIILSAVTVTNSTMGLLLGFGA 531          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A2R5GPE0_9STRA (Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPE0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.140e-21
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   55 PQAWNVVLGDGLHNCLDGMVIAVAFAGCG-SSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLS-TPSLTAEGIGYMLLFGS 360
            P   NVV+GDG+ N  DG++I  AFA C  S++GW  L A++ HEIPQE+ DF VLL +GLS   A+ +N  S L AV G +I L+ +  ++ EG G +LL+G+
Sbjct:  285 PLIANVVIGDGMCNLTDGLIIGTAFAFCSESNLGWITLAAILLHEIPQEVVDFVVLLSAGLSIKMAIFYNFLSSLLAVLGVVIALALSGEISVEGQGLVLLYGA 388          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A0P1AM43_PLAHL (Serine threonine protein phosphatase 2a n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM43_PLAHL)

HSP 1 Score: 97.4 bits (241), Expect = 3.730e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   49 VRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            ++P A+ ++LGD  HN +DG++IA AF  C  S+G ++  + + HE+PQE ADF +L+DSG +  QA+ FN  S L A  G I+VL+   +T E +G +L  GS
Sbjct:  338 IKPMAYIILLGDLFHNFVDGVLIATAFLACDDSLGISVTASAVLHELPQEFADFIILVDSGFTPFQAVLFNFLSALSAFVGAIVVLAAVPVTNETMGLLLAVGS 441          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A5D6YCB8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCB8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.290e-21
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   49 VRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            V P AW   +GD  H   DG+V+AVAF  C SS+GW +   V+ HE+P  + DFF+ + +G+   QAL  N  + L ++ G +I+L+  S++   +GY++ FGS
Sbjct:  375 VEPVAWITAVGDFFHAFTDGVVLAVAFKSCSSSLGWAVALGVVLHEVPHRVGDFFIYIKAGMVIPQALVLNFIASLASLLGAVILLAAGSVSNHALGYLMGFGS 478          
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Match: A0A2D4CIT5_PYTIN (Ev486 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIT5_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 1.280e-20
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   49 VRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPSLTAEGIGYMLLFGS 360
            V+P AW   +GD +H   DG+V+AVAF  C SS+GW ++  ++ HE+P  + DFF+ L +G+   QAL  N  + L +  G +I+L+  S++   +G++L FG+
Sbjct:  660 VQPLAWITAIGDVVHAFTDGVVLAVAFKSCSSSLGWAVMLGIVLHEVPHRVGDFFIFLKAGMMVSQALFVNFIASLASFVGVLILLAAGSVSDHTLGFLLAFGT 763          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y4U9_HETAK3.390e-79100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DBT4_HETAK1.210e-5586.79Hypothetical protein n=8 Tax=Heterosigma akashiwo ... [more]
A0A6V1U7C3_HETAK1.170e-4573.50Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A2R5GVZ1_9STRA1.510e-2247.12Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgi... [more]
A0A2R5GRU2_9STRA1.870e-2246.15Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgi... [more]
A0A5D6Y9S6_9STRA2.560e-2244.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2R5GPE0_9STRA3.140e-2147.12Zinc transporter ZIP12 n=1 Tax=Hondaea fermentalgi... [more]
A0A0P1AM43_PLAHL3.730e-2143.27Serine threonine protein phosphatase 2a n=1 Tax=Pl... [more]
A0A5D6YCB8_9STRA8.290e-2139.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CIT5_PYTIN1.280e-2038.46Ev486 n=1 Tax=Pythium insidiosum TaxID=114742 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:927676..928545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNP7
Model size362
Max annot lvl2880.D8LNP7|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.47e-25
EggNOG OGsCOG0428@1|root,KOG2693@2759|Eukaryota
Descriptioncellular zinc ion homeostasis
Cds size360
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.397688-CDS-H-akashiwo_Contig93:927676..9278341681388047.397688-CDS-H-akashiwo_Contig93:927676..927834Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 927677..927834 -
1681388047.408338-CDS-H-akashiwo_Contig93:928122..9281911681388047.408338-CDS-H-akashiwo_Contig93:928122..928191Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 928123..928191 -
1681388047.4178717-CDS-H-akashiwo_Contig93:928412..9285451681388047.4178717-CDS-H-akashiwo_Contig93:928412..928545Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 928413..928545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.27.1prot_H-akashiwo_Contig93.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 927677..928545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.27.1

>prot_H-akashiwo_Contig93.27.1 ID=prot_H-akashiwo_Contig93.27.1|Name=mRNA_H-akashiwo_Contig93.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=120bp
ARRVKAGLLQLPRAADVRPQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSM
GWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGII
VLSTPSLTAEGIGYMLLFGS
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mRNA from alignment at H-akashiwo_Contig93:927676..928545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.27.1 ID=mRNA_H-akashiwo_Contig93.27.1|Name=mRNA_H-akashiwo_Contig93.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=870bp|location=Sequence derived from alignment at H-akashiwo_Contig93:927676..928545- (Heterosigma akashiwo CCMP452)
GCAAGGCGGGTGAAGGCGGGGCTGCTGCAGCTGCCGCGGGCGGCGGACGT GCGGCCGCAGGCGTGGAACGTGGTGCTGGGGGACGGCCTGCACAACTGCC TGGACGGGATGGTCATCGCCGTGGCCTTCGCAGGTGAGAGGAAGGGGAAG GGGCGCGGGGCCGCGGGGCGGGGCCGCAGGCATCCATCTGGCTCTGGGCG CTGGTCACCCCGCGCCCCAAGGGCCTCGACCCCCCCCTCCCTCAACATGA GTTTTCGTTGGTTTATGTATCAAACCTTACGACGACTGCCGATTCCTCTT CTCCCTTTTTTACTTCTGTATATGTATATATATCTCGTTGAACCCCTTGG GCAGGTTGCGGCAGCAGCATGGGGTGGACCATTTTAGGGGCAGTGATGTC CCACGAAATTCCTCAAGAAATAGGCAAGTAATTGTGATACCACATGGCCA CTCGAGTGGTAAACTACACTTGCTATTCCATAGATAACGTTTTCCCTATC TTGGGGCGGCATTTACAGTCAATGTGCCATCATGACCATGACATGCATGC TGCTGTTCAGTTTTACAATCATCCCAACAGCCTTATAATAATACTTATAC TTACAGACAGCAGAAATCAATGCGGTCTGAATGGATCTATGGTAGATTAC TGCAACCCTCAAATGCCTTTCGCTGAAATGTATATATTCACTCAACATTC CTTTTTGGCAGCTGACTTTTTTGTGCTTTTGGACTCTGGGCTGAGTTTTG GTCAAGCACTTTGTTTCAACCTCTTCTCTGGGCTCTGCGCTGTGGCCGGG GGCATCATTGTACTATCAACCCCCTCATTGACTGCTGAGGGCATTGGCTA CATGCTTTTATTTGGATCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:927676..928545-

>mRNA_H-akashiwo_Contig93.27.1 ID=mRNA_H-akashiwo_Contig93.27.1|Name=mRNA_H-akashiwo_Contig93.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=360bp|location=Sequence derived from alignment at H-akashiwo_Contig93:927676..928545- (Heterosigma akashiwo CCMP452)
GCAAGGCGGGTGAAGGCGGGGCTGCTGCAGCTGCCGCGGGCGGCGGACGT
GCGGCCGCAGGCGTGGAACGTGGTGCTGGGGGACGGCCTGCACAACTGCC
TGGACGGGATGGTCATCGCCGTGGCCTTCGCAGGTTGCGGCAGCAGCATG
GGGTGGACCATTTTAGGGGCAGTGATGTCCCACGAAATTCCTCAAGAAAT
AGCTGACTTTTTTGTGCTTTTGGACTCTGGGCTGAGTTTTGGTCAAGCAC
TTTGTTTCAACCTCTTCTCTGGGCTCTGCGCTGTGGCCGGGGGCATCATT
GTACTATCAACCCCCTCATTGACTGCTGAGGGCATTGGCTACATGCTTTT
ATTTGGATCG
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