mRNA_H-akashiwo_Contig920.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig920.6.1
Unique NamemRNA_H-akashiwo_Contig920.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A6V1QME2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QME2_HETAK)

HSP 1 Score: 171 bits (432), Expect = 1.090e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 MGGAVGAAMSMNPDLIMWVPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            MGGAVGAAMSMNPDLIMWVPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVH R
Sbjct:    5 MGGAVGAAMSMNPDLIMWVPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHDR 90
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BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A835ZE80_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE80_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-11
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            +P++MVG++IGRGGENI+R+ +  GVN+QI K  ++  G++ R + LKGPP A    K +++ +++ R
Sbjct:  230 IPNAMVGVVIGRGGENIQRIQREFGVNIQIAKSTDIPPGAVARPITLKGPPQALAAAKAEVMNLINDR 297
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BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A7S1CM10_9STRA (Branchpoint-bridging protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM10_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.970e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            +PD MVGLIIGRGG+NI+ L   TG NVQ++++ +   G+ QRKV +KG  +A + C+  I  M+  R
Sbjct:  184 IPDHMVGLIIGRGGDNIRELQDRTGANVQVQREQDQAPGTNQRKVGIKGKEEAVRACQAAIEGMISMR 251
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A6P7GK66_DIAVI (far upstream element-binding protein 1-like isoform X1 n=4 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GK66_DIAVI)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    4 GGAVGAAMSMNPDLIMWVPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            GG       M+ D+   VPD MVGLIIGRGGE I RL   TG  +Q+    +   G   R   L GP DA +R K  I++++ HR
Sbjct:   90 GGGPPGMQQMSEDIK--VPDKMVGLIIGRGGEQITRLQSETGCKIQMAPDSQ---GMSDRICSLSGPKDAVERAKQLIIDIIRHR 169
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BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A7S4E6N5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6N5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-8
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMH---EGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            VP+ MVGL+IGRGGENIKRL+   GV VQ+ K+ E     +    R++ + G P+   R K D+ EM+  R
Sbjct:  269 VPNGMVGLVIGRGGENIKRLNLDFGVRVQVAKEAEPRKTPDAVETRRIAITGTPEGIDRAKKDLSEMIKTR 339
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A835YN15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN15_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.740e-8
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHR 258
            +P+ MVG++IGRGGENI+++ +  GVN+QI K  ++  G+  R V LKGP  +    K ++ +++  R
Sbjct:  213 IPNEMVGVVIGRGGENIQKIQREYGVNIQIAKAQDVRPGATTRPVTLKGPKHSLVPAKAEVDKLIMER 280
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A674P4Q9_TAKRU (KH-type splicing regulatory protein n=2 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674P4Q9_TAKRU)

HSP 1 Score: 58.5 bits (140), Expect = 5.060e-8
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHE--GSMQRKVMLKGPPDAQQRCKGDILEMV 249
            VPD+MVGLIIGRGGE I ++ Q +G  VQ       H+  G  +R+V L GPPDA QR K  I ++V
Sbjct:   90 VPDAMVGLIIGRGGEQINKIQQESGCKVQFA-----HDTAGLPERRVSLTGPPDAIQRAKALIDDIV 151
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A6P7MPD9_BETSP (far upstream element-binding protein 2 isoform X1 n=5 Tax=Anabantoidei TaxID=50370 RepID=A0A6P7MPD9_BETSP)

HSP 1 Score: 58.5 bits (140), Expect = 5.120e-8
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   28 SMNPDLIMW---VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMV 249
            S+ P  +M    VPD+MVGLIIGRGGE I ++ Q +G  VQI        G  +R V L GPPDA  R K  I ++V
Sbjct:   95 SVRPSTVMEEYRVPDAMVGLIIGRGGEQINKIQQDSGCKVQIAHDSA---GLPERSVSLTGPPDAIMRAKALIDDVV 168
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A5C6N1P5_9TELE (Far upstream element-binding protein 2 n=3 Tax=Takifugu TaxID=31032 RepID=A0A5C6N1P5_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 5.120e-8
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHE--GSMQRKVMLKGPPDAQQRCKGDILEMV 249
            VPD+MVGLIIGRGGE I ++ Q +G  VQ       H+  G  +R+V L GPPDA QR K  I ++V
Sbjct:  107 VPDAMVGLIIGRGGEQINKIQQESGCKVQFA-----HDTAGLPERRVSLTGPPDAIQRAKALIDDIV 168
[Close]
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Match: A0A6G1PAS9_9TELE (Far upstream element-binding protein 2 n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6G1PAS9_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 5.120e-8
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   55 VPDSMVGLIIGRGGENIKRLSQSTGVNVQIEKQGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMV 249
            VPDSMVGLIIGRGGE I ++ Q +G  VQI        G  +R V L G PDA QR K  I ++V
Sbjct:  105 VPDSMVGLIIGRGGEQINKIQQDSGCKVQIAHDSA---GLQERSVSLTGSPDAIQRAKALIDDIV 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig920.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1QME2_HETAK1.090e-5098.84Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A835ZE80_9STRA1.130e-1142.65Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1CM10_9STRA5.970e-1147.06Branchpoint-bridging protein (Fragment) n=1 Tax=Bi... [more]
A0A6P7GK66_DIAVI1.090e-842.35far upstream element-binding protein 1-like isofor... [more]
A0A7S4E6N5_9STRA1.460e-845.07Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A835YN15_9STRA2.740e-839.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A674P4Q9_TAKRU5.060e-850.75KH-type splicing regulatory protein n=2 Tax=Takifu... [more]
A0A6P7MPD9_BETSP5.120e-846.75far upstream element-binding protein 2 isoform X1 ... [more]
A0A5C6N1P5_9TELE5.120e-850.75Far upstream element-binding protein 2 n=3 Tax=Tak... [more]
A0A6G1PAS9_9TELE5.120e-852.31Far upstream element-binding protein 2 n=5 Tax=Per... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig920contigH-akashiwo_Contig920:319492..321747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog31033.ENSTRUP00000026177
Preferred nameKHSRP
PFAMsDUF1897,KH_1
Model size267
Max annot lvl33208|Metazoa
KEGG koko:K13210
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000381,GO:0001505,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010586,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010984,GO:0010985,GO:0010988,GO:0010989,GO:0016070,GO:0016071,GO:0017091,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0022414,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032504,GO:0032991,GO:0033119,GO:0034097,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0035925,GO:0036464,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0045019,GO:0045428,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048025,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050684,GO:0050686,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903311,GO:1903312,GO:1903313,GO:1903426,GO:1903427,GO:1904406,GO:1990904,GO:2000112,GO:2000113,GO:2000377,GO:2000378,GO:2000628
Exons4
Evalue8.41e-09
EggNOG OGsKOG1676@1|root,KOG1676@2759|Eukaryota,38H75@33154|Opisthokonta,3BHJ2@33208|Metazoa,3CTFY@33213|Bilateria,4872V@7711|Chordata,492GI@7742|Vertebrata,49UUT@7898|Actinopterygii
DescriptionKH-type splicing regulatory protein
Cds size267
COG categoryA
BRITEko00000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.565234-CDS-H-akashiwo_Contig920:319491..3195371681388043.565234-CDS-H-akashiwo_Contig920:319491..319537Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 319492..319537 -
1681388043.5778115-CDS-H-akashiwo_Contig920:319810..3198901681388043.5778115-CDS-H-akashiwo_Contig920:319810..319890Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 319811..319890 -
1681388043.5885668-CDS-H-akashiwo_Contig920:321104..3211911681388043.5885668-CDS-H-akashiwo_Contig920:321104..321191Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 321105..321191 -
1681388043.597525-CDS-H-akashiwo_Contig920:321693..3217471681388043.597525-CDS-H-akashiwo_Contig920:321693..321747Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 321694..321747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig920.6.1prot_H-akashiwo_Contig920.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig920 319492..321747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig920.6.1

>prot_H-akashiwo_Contig920.6.1 ID=prot_H-akashiwo_Contig920.6.1|Name=mRNA_H-akashiwo_Contig920.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
MGGAVGAAMSMNPDLIMWVPDSMVGLIIGRGGENIKRLSQSTGVNVQIEK
QGEMHEGSMQRKVMLKGPPDAQQRCKGDILEMVHHRAER
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mRNA from alignment at H-akashiwo_Contig920:319492..321747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig920.6.1 ID=mRNA_H-akashiwo_Contig920.6.1|Name=mRNA_H-akashiwo_Contig920.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2256bp|location=Sequence derived from alignment at H-akashiwo_Contig920:319492..321747- (Heterosigma akashiwo CCMP452)
ATGGGCGGGGCGGTCGGTGCCGCCATGTCCATGAACCCGGACCTGATTAT
GTGGGTGAGTCCTGCACCGATGCGACTGCCCTGGCTGTACTCTTTAGGCG
CAGAAGCCTGTGCTCGGGTCACAAGGCACGCAGCAACCCAAGTGGTCAGT
CGAAGAGCTGGTTATGGATTGAATATATTATATATATATATGCCCACCTT
ATTCTCAGATCTTTTTTAAGAAGACTTTTCTTCAGGGCCAACAAACTTAT
GCACTGTGCCCCGAAGCATAAATTAGGTAGCAGTCTTGCTACAAATGAGA
ACAATGTGGGCAATATATGAGTACATTACCGCAGGGACATCTGCATAGAT
GCAAGGTGTAGGTTGTTTCAGTAGTTAAATTTAACTCTCTCTCTCTCTAT
ATATAGACGTTATATACATGCATAAATTTAATCACTATAAAGAAGCAGCA
ATCACAGCAGTTATCTGGTGTTCACCATTTATAGAAAAATACTCAAGTAA
GCTTTGAGGAAAGAAAAAAAAACAATCAATTTTTCACTATAATGACCTCA
TAACAGGTGCCGGACAGTATGGTGGGGCTAATCATCGGCCGGGGGGGTGA
GAACATCAAGCGCCTGTCACAATCCACCGGGGTGAATGTCCAGGTTAGCC
CAAAAAGTTCTTCAGAAAAGATACACACATACGAAGGGGCCTGTGGTTGA
ATCGTCGAATTCTTTTGATAGATCCGCAAAAAATTTCAATATCAACCCGC
GTGTATTTTCATTCGACTTCTTTCTCTTCTCACAATTGATCCGAGCTAGG
GTTGTCGGGTTGTCGGGTTTGCTTTTTTGAGAATAAAAATGAAAACACAG
TTTACAGCACTCAACATGGACGCTCGTTACGACAAAGAAGATATAAAGAG
GAGTGGCCTTTCAAGATAAATATTCGATTTTATCCGAAATAGAACTTTAC
CGTTTATTTCGGAAATTTCACTCCATTTCCACGTGCTCGCCAGGACAACA
TATTTTGAATTTAACTGGCTCCCTATTCTATTTCAATGAAATTAGTTCGA
TAACCCTTGTAATTCGACAACCCAGCCCAGGGTTACCGGGTTGTGGTATT
CGAACTCGACAACCCTCAAAATTCTGGCTCCCGAATCTATATCTATTACA
TTTATTCGACAATCCGAAAACCCGACAATCCAGCTCGGATTGAGTGTCAA
AAAATGGTGAAAATGCAATTATGGATACAGAGAAAGGCAACGCGAGAAGA
AGAAGAGGCCCGGATGCAACGGACGCGGATCTATCAAAAGAATTCGAGGA
TCGAACCATAGGCCCCTTCGTATATATATTTAGTATTTTACTTACTGTGG
AGTCATGCGAACTATATGAGCCAGCCTGGAATTCACCTGGCACAGCTCAG
GTCATTCTTGAACTTCTGTCACTCAATCGGTCCCTACGGCCAGTAGACCT
ATCAAGTCTACGGATTTCTCATCATCCGATTATCTTTGAACATTCCTATT
CATAGCCAATTATCTTACCATCAGCCAACACTGTCTTGTCTTGTTTTATT
TTTACTCCACTGGCCAATTATCTTGGTATAGTTTTGTATTCTGTCGCACA
TTGGGCGATCCGCGTGAATAAAAATGACCAAGATAATTGGCTGATGGAAT
AAAAAATCCCTGAGATAAACGGCTATGAACAAAAAATTCAAAGATTCTGT
ATTGGATGATGGCAAGTACAAAGATGCGGTAGGTCCATTGGCTGGACCGA
AAATGGAATGTCAGAAGCTCGCCTTGGCCGCTATTGTGCCATACTGTAAT
ATTTGACCCTTTTTTTGTAAATCATATTCCCTCCTGCCTGCCCCTCTCTG
TCTTCAGATTGAGAAGCAGGGGGAGATGCACGAGGGCAGCATGCAGCGCA
AGGTCATGCTCAAAGGCCCGCCGGATGCACAGCAGCGGTGAGGACAACAT
TATAATTTCCAACAACAGCCCTGCTGGATGGAGCGCGGCTAATTATATGT
TCTGTACTCAGCAGCAGTCTTCAGCTGGGAACATGAACAACAACTGGTCG
CGTGATTTTCATGAACAGCTCTGGTCATCTGTCACCTCTGTTATTTTCCG
AAATCATTTGGGATCAGTTGGTTGAGCCAGGACGCAGCAGGCGCGAGGTT
ACGGCCCGGAAGAACGTGCGCGGTCGGCGAGTGGAATATTTTGCACCTGC
CGCCCCGCAGGTGCAAGGGCGACATCCTCGAGATGGTGCACCACCGAGCG
GAACGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig920:319492..321747-

>mRNA_H-akashiwo_Contig920.6.1 ID=mRNA_H-akashiwo_Contig920.6.1|Name=mRNA_H-akashiwo_Contig920.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig920:319492..321747- (Heterosigma akashiwo CCMP452)
ATGGGCGGGGCGGTCGGTGCCGCCATGTCCATGAACCCGGACCTGATTAT
GTGGGTGCCGGACAGTATGGTGGGGCTAATCATCGGCCGGGGGGGTGAGA
ACATCAAGCGCCTGTCACAATCCACCGGGGTGAATGTCCAGATTGAGAAG
CAGGGGGAGATGCACGAGGGCAGCATGCAGCGCAAGGTCATGCTCAAAGG
CCCGCCGGATGCACAGCAGCGGTGCAAGGGCGACATCCTCGAGATGGTGC
ACCACCGAGCGGAACGG
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