mRNA_H-akashiwo_Contig92.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig92.3.1
Unique NamemRNA_H-akashiwo_Contig92.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Match: A0A7S3Y8X5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8X5_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 6.570e-7
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 CMHATCSKVPSFAFEGERRGRFCAQHKLPGMENV 102
            C  A CSKVPSF FEGE+RGRFCAQHK+ GM +V
Sbjct:    8 CEQAGCSKVPSFNFEGEQRGRFCAQHKVQGMVDV 41
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BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Match: A0A7S3Y1J6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1J6_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.020e-6
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 CMHATCSKVPSFAFEGERRGRFCAQHKLPGMENVR 105
            C HA C+KV  +AFEGE+R RFC QHKLPGM NVR
Sbjct:   15 CEHAGCTKVHYYAFEGEKRPRFCGQHKLPGMVNVR 49
[Close]
BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Match: A0A7S4DD22_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD22_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 3.260e-6
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 CMHATCSKVPSFAFEGERRGRFCAQHKLPGMENVR 105
            C HA CSK P F FEGERRGRFCAQHK  GM NV+
Sbjct:  146 CEHAGCSKEPVFNFEGERRGRFCAQHKEQGMVNVK 180
[Close]
BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Match: A0A7S4DAU5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU5_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 3.220e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 CMHATCSKVPSFAFEGERRGRFCAQHKLPGMENVRRK 111
            C  A CSK PSF FEGE+RGR+CAQHKL  M  ++R+
Sbjct:    2 CEQAGCSKRPSFNFEGEQRGRYCAQHKLQDMVAIKRR 38
[Close]
BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Match: A0A7S4DAT2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAT2_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 7.110e-5
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 CMHATCSKVPSFAFEGERRGRFCAQHKLPGMENVRRKWC 117
            C    C+ V  F FEGE+RGRFCAQHKL GM NV+ K C
Sbjct:   29 CEQGDCTSVSVFNFEGEQRGRFCAQHKLQGMINVKSKRC 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig92.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3Y8X5_HETAK6.570e-773.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y1J6_HETAK1.020e-671.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD22_HETAK3.260e-674.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DAU5_HETAK3.220e-562.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DAT2_HETAK7.110e-561.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig92contigH-akashiwo_Contig92:203789..206326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1932
Hectar predicted targeting categoryother localisation
Exons4
Cds size1929
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.413992-CDS-H-akashiwo_Contig92:203788..2045751681388042.413992-CDS-H-akashiwo_Contig92:203788..204575Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 203789..204575 -
1681388042.4245706-CDS-H-akashiwo_Contig92:204848..2051271681388042.4245706-CDS-H-akashiwo_Contig92:204848..205127Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 204849..205127 -
1681388042.4351947-CDS-H-akashiwo_Contig92:205346..2060991681388042.4351947-CDS-H-akashiwo_Contig92:205346..206099Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 205347..206099 -
1681388042.4517264-CDS-H-akashiwo_Contig92:206213..2063231681388042.4517264-CDS-H-akashiwo_Contig92:206213..206323Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 206214..206323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.4607205-UTR-H-akashiwo_Contig92:206323..2063261681388042.4607205-UTR-H-akashiwo_Contig92:206323..206326Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig92 206324..206326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig92.3.1prot_H-akashiwo_Contig92.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig92 203789..206323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig92.3.1

>prot_H-akashiwo_Contig92.3.1 ID=prot_H-akashiwo_Contig92.3.1|Name=mRNA_H-akashiwo_Contig92.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=643bp
MHATCSKVPSFAFEGERRGRFCAQHKLPGMENVRRKWCEHDGCGKRPYFN
VEGEERGRFCAQHKEQGMLDVKSKKCQHTGCAKVPHFNFEGERRGIFCAQ
HKGQGMVYVKSKKCGHAGCSTMPCFNFEGERRGRFCAQHKAKGMVNVENK
RCEQTGCSKQPCFNFEGEKTGRSCAQHKLQGMVDVLNKSKKCGHAGCNTM
PCFNFEGERRRRFCAQHKAKGMVNVENKRCEQAGCSKRPCFNFEGERRGM
FCAQHKGQGMVYVNSKKCGHAGCSTMPRFNFEGERRGRLCKFHQLRGMVD
ITNKSCEHAGCSKEPSFNFEGEKRGRFCVQHKELGMVDVKNKRCEQAGCS
KRPYFNIEGEESGRFCGQRKAQGMVGRKRKNCEHAGCSKEPSFNFEGEKR
GRFCVQHKELGMVDVKNKRCEQAGCSKRPYFNIEGEESGRFCGQRKAQGM
VDVKRKKCEQDGCNKQPAFNFEGERRGRFCAQHKGQGMVYVKSKKCGHAG
CGKVPNFNFEGQQKGKFCGKHREQGMVDVKSKKCKHAGCGKVPNFNFQGE
QGGRFCAQHKEQGMVDVKHKTCEQAGCSKKPYFNIKGIRYGRFCAQHQLE
GMVNVMAKRCEHAGCSKQPSYNFAGKRDRRFCTQHKLQGMVEV
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mRNA from alignment at H-akashiwo_Contig92:203789..206326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig92.3.1 ID=mRNA_H-akashiwo_Contig92.3.1|Name=mRNA_H-akashiwo_Contig92.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2538bp|location=Sequence derived from alignment at H-akashiwo_Contig92:203789..206326- (Heterosigma akashiwo CCMP452)
TGCATGCATGCCACATGCAGCAAAGTGCCTTCCTTTGCTTTTGAGGGCGA
AAGGAGAGGGAGATTCTGTGCTCAGCACAAACTACCGGGTATGGAAAATG
TGCGGCGCAAGTGGTGCGAGCTGGCTGGCTGCTCAAAAAAGGCGTACTTC
AGGTTTGAGGGCGAGCAAAGAAACAGGTTCTGTCGGCGTCACAAGCTGCA
GGGAATGGTGAACGTGGAGACAGAGAGGTGCGAGCACGATGGGTGCGGGA
AGAGGCCTTACTTCAACGTGGAGGGCGAGGAGAGGGGCAGGTTCTGTGCC
CAGCACAAGGAGCAGGGCATGCTGGATGTCAAGAGCAAGAAGTGCCAACA
CACTGGGTGCGCCAAGGTGCCTCACTTCAACTTTGAGGGCGAGCGGAGGG
GCATCTTCTGCGCTCAACACAAGGGGCAGGGCATGGTGTATGTGAAGAGC
AAGAAGTGCGGGCATGCCGGATGCAGCACGATGCCTTGTTTCAACTTTGA
GGGCGAGCGGAGGGGCAGGTTCTGTGCTCAGCACAAGGCGAAGGGCATGG
TGAATGTGGAGAACAAGAGGTGCGAGCAGACTGGGTGCAGCAAGCAGCCT
TGCTTCAACTTTGAGGGCGAGAAGACGGGCAGGTCCTGTGCCCAGCACAA
GCTCCAGGGCATGGTGGATGTGTTAAACAAGAGCAAGAAGTGCGGGCATG
CCGGATGCAACACCATGCCTTGTTTCAACTTTGAGGGCGAGCGCAGGCGC
AGGTTCTGTGCGCAGCACAAGGCGAAGGGCATGGTGAATGTGGAGAACAA
GAGGTGCGAGCAGGCTGGGTGCAGCAAGCGGCCTTGTTTCAACTTTGAGG
GCGAGCGGAGGGGCATGTTCTGCGCTCAGCACAAGGGGCAGGGCATGGTG
TATGTCAACAGCAAGAAGTGCGGGCATGCCGGATGCAGCACGATGCCTCG
TTTCAACTTTGAGGGCGAGCGGAGGGGCAGGTTCTGTGCCCAGCACAAGG
AGCAGGGCATTCTGATTTTCAAGGGGAAGGAGCCGAAGCACAAGGAAGGC
CCAATGTGCGACCATGCCGGGTGCAGCGAGAACCCTGCCTTCTGTTTCGA
GAACGGGCAGGGGCGGAGGTTGGTGTGTGCACAGCACACTGCTGGGTGTG
CTAAGTCGCCTCTCTTTGACTTTGAAGCGGGGCACACTTTTTTTGGCAGG
TTATGCAAATTTCACCAGTTGCGGGGCATGGTGGACATAACAAACAAGAG
CTGCGAGCATGCTGGGTGCAGCAAGGAGCCTTCCTTCAACTTTGAGGGCG
AGAAGAGGGGCAGGTTCTGTGTCCAGCACAAGGAGCTGGGCATGGTGGAC
GTGAAGAACAAGAGGTGCGAGCAGGCTGGGTGCAGCAAGCGGCCTTACTT
CAACATTGAGGGTGAGGAGAGCGGCAGGTTTTGTGGGCAGCGCAAGGCGC
AGGGCATGGTGGGACGGAAGCGCAAGAAGTGCGAGCAGGACGGGTGCAAC
AAGCAGCCTGCCTTCAACTTTGAGGGCGAGCGGAGGGGCAGGTTCTGTGC
TCAGCACAAGGAGCAGGGCATGGTGTATGTCAAGAGCAAGAAGTGCGAAG
GCATGGTGGAAGCCAGGAGCATGAGCTCGAGCTGCGAGCATGCTGGGTGT
GGTAAGTCGCCTCTCTTTGACTTTGAAGCGGGGCACACTTTTTTTGGCAG
GTTATGCAAATTTCACCAGTTGCGGGGCATGGTGGACATAACAAACAAGA
GCTGCGAGCATGCTGGGTGCAGCAAGGAGCCTTCCTTCAACTTTGAGGGC
GAGAAGAGGGGCAGGTTCTGTGTCCAGCACAAGGAGCTGGGCATGGTGGA
CGTGAAGAACAAGAGGTGCGAGCAGGCTGGGTGCAGCAAGCGGCCTTACT
TCAACATTGAGGGTGAGGAGAGCGGCAGGTTTTGTGGGCAGCGCAAGGCG
CAGGGCATGGTGGACGTGAAGCGCAAGAAGTGCGAGCAGGACGGGTGCAA
CAAGCAGCCTGCCTTCAACTTTGAGGGCGAGCGGAGGGGCAGGTTCTGTG
CTCAGCACAAGGGGCAGGGCATGGTGTATGTCAAGAGCAAGAAGTGCGGG
CATGCTGGGTGTGGCAAGGTGCCAAACTTCAACTTTGAGGGCCAGCAGAA
AGGCAAATTCTGTGGCAAGCATAGAGAGCAGGGGATGGTGGATGTAAAGA
GCAAGAAGTGTAAGCATGCTGGGTGCGGTAAGGTGCCAAACTTCAACTTT
CAGGGTGAGCAGGGCGGCAGGTTCTGCGCTCAGCACAAGGAGCAGGGGAT
GGTGGATGTGAAGCACAAGACATGCGAGCAGGCCGGGTGCAGTAAGAAGC
CTTATTTCAATATAAAAGGGATTCGTTATGGCAGGTTCTGCGCACAGCAC
CAGCTGGAGGGCATGGTGAATGTGATGGCCAAGAGGTGCGAGCATGCCGG
TTGCAGCAAACAACCTTCCTACAACTTTGCGGGCAAGCGGGACCGCAGAT
TTTGTACACAGCACAAGCTACAGGGCATGGTGGAAGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig92:203789..206326-

>mRNA_H-akashiwo_Contig92.3.1 ID=mRNA_H-akashiwo_Contig92.3.1|Name=mRNA_H-akashiwo_Contig92.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1929bp|location=Sequence derived from alignment at H-akashiwo_Contig92:203789..206326- (Heterosigma akashiwo CCMP452)
ATGCATGCCACATGCAGCAAAGTGCCTTCCTTTGCTTTTGAGGGCGAAAG
GAGAGGGAGATTCTGTGCTCAGCACAAACTACCGGGTATGGAAAATGTGC
GGCGCAAGTGGTGCGAGCACGATGGGTGCGGGAAGAGGCCTTACTTCAAC
GTGGAGGGCGAGGAGAGGGGCAGGTTCTGTGCCCAGCACAAGGAGCAGGG
CATGCTGGATGTCAAGAGCAAGAAGTGCCAACACACTGGGTGCGCCAAGG
TGCCTCACTTCAACTTTGAGGGCGAGCGGAGGGGCATCTTCTGCGCTCAA
CACAAGGGGCAGGGCATGGTGTATGTGAAGAGCAAGAAGTGCGGGCATGC
CGGATGCAGCACGATGCCTTGTTTCAACTTTGAGGGCGAGCGGAGGGGCA
GGTTCTGTGCTCAGCACAAGGCGAAGGGCATGGTGAATGTGGAGAACAAG
AGGTGCGAGCAGACTGGGTGCAGCAAGCAGCCTTGCTTCAACTTTGAGGG
CGAGAAGACGGGCAGGTCCTGTGCCCAGCACAAGCTCCAGGGCATGGTGG
ATGTGTTAAACAAGAGCAAGAAGTGCGGGCATGCCGGATGCAACACCATG
CCTTGTTTCAACTTTGAGGGCGAGCGCAGGCGCAGGTTCTGTGCGCAGCA
CAAGGCGAAGGGCATGGTGAATGTGGAGAACAAGAGGTGCGAGCAGGCTG
GGTGCAGCAAGCGGCCTTGTTTCAACTTTGAGGGCGAGCGGAGGGGCATG
TTCTGCGCTCAGCACAAGGGGCAGGGCATGGTGTATGTCAACAGCAAGAA
GTGCGGGCATGCCGGATGCAGCACGATGCCTCGTTTCAACTTTGAGGGCG
AGCGGAGGGGCAGGTTATGCAAATTTCACCAGTTGCGGGGCATGGTGGAC
ATAACAAACAAGAGCTGCGAGCATGCTGGGTGCAGCAAGGAGCCTTCCTT
CAACTTTGAGGGCGAGAAGAGGGGCAGGTTCTGTGTCCAGCACAAGGAGC
TGGGCATGGTGGACGTGAAGAACAAGAGGTGCGAGCAGGCTGGGTGCAGC
AAGCGGCCTTACTTCAACATTGAGGGTGAGGAGAGCGGCAGGTTTTGTGG
GCAGCGCAAGGCGCAGGGCATGGTGGGACGGAAGCGCAAGAACTGCGAGC
ATGCTGGGTGCAGCAAGGAGCCTTCCTTCAACTTTGAGGGCGAGAAGAGG
GGCAGGTTCTGTGTCCAGCACAAGGAGCTGGGCATGGTGGACGTGAAGAA
CAAGAGGTGCGAGCAGGCTGGGTGCAGCAAGCGGCCTTACTTCAACATTG
AGGGTGAGGAGAGCGGCAGGTTTTGTGGGCAGCGCAAGGCGCAGGGCATG
GTGGACGTGAAGCGCAAGAAGTGCGAGCAGGACGGGTGCAACAAGCAGCC
TGCCTTCAACTTTGAGGGCGAGCGGAGGGGCAGGTTCTGTGCTCAGCACA
AGGGGCAGGGCATGGTGTATGTCAAGAGCAAGAAGTGCGGGCATGCTGGG
TGTGGCAAGGTGCCAAACTTCAACTTTGAGGGCCAGCAGAAAGGCAAATT
CTGTGGCAAGCATAGAGAGCAGGGGATGGTGGATGTAAAGAGCAAGAAGT
GTAAGCATGCTGGGTGCGGTAAGGTGCCAAACTTCAACTTTCAGGGTGAG
CAGGGCGGCAGGTTCTGCGCTCAGCACAAGGAGCAGGGGATGGTGGATGT
GAAGCACAAGACATGCGAGCAGGCCGGGTGCAGTAAGAAGCCTTATTTCA
ATATAAAAGGGATTCGTTATGGCAGGTTCTGCGCACAGCACCAGCTGGAG
GGCATGGTGAATGTGATGGCCAAGAGGTGCGAGCATGCCGGTTGCAGCAA
ACAACCTTCCTACAACTTTGCGGGCAAGCGGGACCGCAGATTTTGTACAC
AGCACAAGCTACAGGGCATGGTGGAAGTG
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