mRNA_H-akashiwo_Contig9.66.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.66.1
Unique NamemRNA_H-akashiwo_Contig9.66.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A7S3XMF6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMF6_HETAK)

HSP 1 Score: 159 bits (403), Expect = 2.000e-46
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3
Query:    3 PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN 203
            PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN
Sbjct:  211 PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN 277          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A7S3XLY6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLY6_HETAK)

HSP 1 Score: 159 bits (403), Expect = 4.720e-46
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3
Query:    3 PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN 203
            PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN
Sbjct:  244 PKKCGMPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN 310          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A1S3WYH7_TOBAC (RING finger protein 11-like n=3 Tax=Nicotiana TaxID=4085 RepID=A0A1S3WYH7_TOBAC)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 3
Query:   39 DTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRD 194
            D   E C +C+ EYK GD++G L C+H FHL CIK+W  + + CP+CR   D
Sbjct:   88 DEEPETCAICILEYKNGDIIGKLQCEHEFHLDCIKQWLLKKKVCPLCRASAD 139          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: Q24GF5_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24GF5_TETTS)

HSP 1 Score: 67.0 bits (162), Expect = 5.510e-11
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3
Query:   36 CDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICR 182
            CD N   CP+C   YK+G+++  L CQH FH  C+K W  +H  CP+CR
Sbjct:  187 CDDNENQCPICYENYKKGEVMNQLPCQHNFHQGCVKEWLNKHNSCPMCR 235          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: UPI0019D60B6B (RING-H2 finger protein ATL70-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D60B6B)

HSP 1 Score: 60.1 bits (144), Expect = 6.790e-9
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 3
Query:   42 TNAEFCPVCLWEYKQGDMLGALS-CQHCFHLKCIKRWFKEHQRCPICR 182
            T A  C VCL EY  GD+L  L  C H FH +C+ RW + HQ CP+CR
Sbjct:   91 TKAACCAVCLGEYAGGDVLRMLPRCGHAFHQRCVDRWLRLHQTCPVCR 138          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A397TX84_9GLOM (RING-type domain-containing protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397TX84_9GLOM)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 3
Query:   51 EFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICR 182
            E C +CL EY+  D L  L C H FH +CI  WFK   +CPICR
Sbjct:   68 ERCTICLSEYEHNDWLRDLPCAHDFHKECIDSWFKNSDKCPICR 111          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A484DQN6_BRELC (RING-type domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQN6_BRELC)

HSP 1 Score: 58.9 bits (141), Expect = 2.460e-8
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 3
Query:   45 NAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICRFDRDEDN 203
            N   CPVC   +  GD +  L C+H FH  CI  W K+H  CP+CRF+   D+
Sbjct:  108 NCAECPVCKDSFAVGDDVHRLPCEHLFHPDCILPWLKQHNSCPLCRFELPTDD 160          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A7S1GPE2_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPE2_CYCTE)

HSP 1 Score: 58.2 bits (139), Expect = 2.540e-8
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 3
Query:   57 CPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPIC-------RFDRDEDN 203
            C +C  E + GD +G LSC H FH++C+K W     +CP+C       RF+ D++N
Sbjct:   66 CTICFAEIEDGDRIGDLSCNHIFHVECLKTWLVRRNQCPLCAGDAATERFEDDDNN 121          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A2I0ALN7_9ASPA (Putative E3 ubiquitin-protein ligase RHA2B n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ALN7_9ASPA)

HSP 1 Score: 59.7 bits (143), Expect = 2.680e-8
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 3
Query:   42 TNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQRCPICR 182
            +N E CP+C       + +GAL+C H +HLKCIK+W K    CP+CR
Sbjct:  176 SNQEICPICQDTEGANEEIGALNCGHLYHLKCIKKWLKIKNNCPLCR 222          
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Match: A0A2C9WCP9_MANES (RING-type domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WCP9_MANES)

HSP 1 Score: 59.7 bits (143), Expect = 4.100e-8
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 3
Query:   36 CDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWF-KEHQRCPICRFD 188
            C+ N E C +CL +YK G++L  L CQH FH  C+  W  K    CP+C+FD
Sbjct:  222 CNQNRETCAICLEDYKDGEILKVLPCQHEFHSSCVDSWLTKWGTFCPVCKFD 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XMF6_HETAK2.000e-46100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XLY6_HETAK4.720e-46100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1S3WYH7_TOBAC1.080e-1148.08RING finger protein 11-like n=3 Tax=Nicotiana TaxI... [more]
Q24GF5_TETTS5.510e-1146.94Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
UPI0019D60B6B6.790e-952.08RING-H2 finger protein ATL70-like n=1 Tax=Panicum ... [more]
A0A397TX84_9GLOM1.780e-852.27RING-type domain-containing protein n=1 Tax=Gigasp... [more]
A0A484DQN6_BRELC2.460e-843.40RING-type domain-containing protein n=1 Tax=Bremia... [more]
A0A7S1GPE2_CYCTE2.540e-839.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A2I0ALN7_9ASPA2.680e-846.81Putative E3 ubiquitin-protein ligase RHA2B n=1 Tax... [more]
A0A2C9WCP9_MANES4.100e-846.15RING-type domain-containing protein n=1 Tax=Maniho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:4736575..4736931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4096.XP_009771103.1
PFAMszf-RING_2,zf-rbx1
Model size357
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-13
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size189
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.697366-UTR-H-akashiwo_Contig9:4736574..47365911681388031.697366-UTR-H-akashiwo_Contig9:4736574..4736591Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 4736575..4736591 +
1681388031.72141-UTR-H-akashiwo_Contig9:4736780..47369311681388031.72141-UTR-H-akashiwo_Contig9:4736780..4736931Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 4736781..4736931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.7125633-CDS-H-akashiwo_Contig9:4736591..47367801681388031.7125633-CDS-H-akashiwo_Contig9:4736591..4736780Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 4736592..4736780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.66.1prot_H-akashiwo_Contig9.66.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 4736592..4736780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.66.1

>prot_H-akashiwo_Contig9.66.1 ID=prot_H-akashiwo_Contig9.66.1|Name=mRNA_H-akashiwo_Contig9.66.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
MPSSPTCDTNAEFCPVCLWEYKQGDMLGALSCQHCFHLKCIKRWFKEHQR
CPICRFDRDEDN*
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mRNA from alignment at H-akashiwo_Contig9:4736575..4736931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.66.1 ID=mRNA_H-akashiwo_Contig9.66.1|Name=mRNA_H-akashiwo_Contig9.66.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig9:4736575..4736931+ (Heterosigma akashiwo CCMP452)
TCCCAAAAAAGTGCGGAATGCCCTCTTCACCTACATGCGACACTAATGCT GAGTTCTGCCCTGTCTGCCTCTGGGAATATAAACAAGGCGACATGTTGGG GGCTTTGAGCTGCCAGCACTGTTTCCACCTCAAGTGCATAAAGAGGTGGT TCAAAGAGCACCAACGCTGCCCCATATGCCGCTTTGATAGGGATGAGGAC AACTGACTTATGGTGAACACTTGTTTCGGCTTCTGGGCGACAAGGAAGCT GCCGGAAGTAATAAACCAATAATATTGCGATCTTCTTGCCAATATTGAGA ACATAACCTCCCAGAAAGTACGATACAAAGTAGCTTCAAGTTTGTAAATA TGTGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:4736575..4736931+

>mRNA_H-akashiwo_Contig9.66.1 ID=mRNA_H-akashiwo_Contig9.66.1|Name=mRNA_H-akashiwo_Contig9.66.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig9:4736575..4736931+ (Heterosigma akashiwo CCMP452)
ATGCCCTCTTCACCTACATGCGACACTAATGCTGAGTTCTGCCCTGTCTG
CCTCTGGGAATATAAACAAGGCGACATGTTGGGGGCTTTGAGCTGCCAGC
ACTGTTTCCACCTCAAGTGCATAAAGAGGTGGTTCAAAGAGCACCAACGC
TGCCCCATATGCCGCTTTGATAGGGATGAGGACAACTGA
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