mRNA_H-akashiwo_Contig9.63.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.63.1
Unique NamemRNA_H-akashiwo_Contig9.63.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A7S2B5T1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5T1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.490e-11
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   22 GNEDAGENSTVRVEGIIMTLMEAFQSE--EVEE--PGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            G+E+ G +     E II  +++ F  +  ++E+    L PDE GPYQNV +QE+  + TL+A   R L ELQ G  G+LTM+D MEALQ
Sbjct: 1964 GDEEGGASPVAAAEAIIADVLDRFGEKNFDIEDLARSLGPDEQGPYQNVFMQEMDVINTLVAEMVRSLKELQLGFAGELTMSDSMEALQ 2052          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: D7FYT3_ECTSI (Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.790e-8
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   58 VEGIIMTLMEAFQSE--EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEAL 273
            V G+  T+++ F  +  +VE+ G S +E GPYQNV +QE+  + TLLA   R L ELQ G  G+LTM+D ME L
Sbjct: 4141 VGGMSETILDKFGEKKFDVEDIGRSLEEAGPYQNVFIQEMDVMNTLLAEIVRSLKELQLGFAGELTMSDAMEGL 4214          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: B8C065_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C065_THAPS)

HSP 1 Score: 60.1 bits (144), Expect = 2.440e-8
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   79 LMEAFQSE--EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQV 279
            L+E F  +  +VEE   S DE+GPYQNV +QE+  +  LLA  +R + ELQ G +G+LTM++PME L +
Sbjct: 4149 LLEKFGEKTFDVEELVRSLDEIGPYQNVFIQEMDVMNVLLAEIKRSIKELQLGFDGELTMSEPMEDLMM 4217          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A7S1UFN1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFN1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.250e-8
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   25 NEDAGENSTVRVEGIIMTLMEAFQ--SEEVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            N D  ++S    EG +  ++E F+  + ++E    S +E+GP+QNV LQE  R+  L+    R L EL  G  G LTM+  MEALQ
Sbjct: 1119 NSDGNQSSQQVAEGTLQDILETFRECAFDIEGTAASCEEMGPFQNVFLQECERMNVLIVEMIRSLTELDLGFRGDLTMSPQMEALQ 1204          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A7S2CVE7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVE7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.110e-7
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    7 DLFQRGNEDAGENSTVRVEGIIMTLMEAFQSEEVEEPGL--SPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQV 279
            DL  +    + +N   R E ++  ++E ++    + PGL  S D++GP++NV +QE  RL  L+ A    LVEL  G +G+LTM++ ME LQ+
Sbjct:  610 DLVSKQGPHSSQN---RSEEVLKDILENYKDNRFDVPGLLASIDDMGPFENVFIQECERLNVLIDAMVSSLVELDLGFKGELTMSERMEELQL 699          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A482RYG8_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYG8_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 2.160e-7
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   67 IIMTLMEAFQSE--EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            +++ +++ FQ +  +V++   S +E+GPYQNV +QE+  +  LLA   R L ELQ G  G+LTM+D M+AL+
Sbjct: 4236 VLLDVLDRFQEKKFDVDDIARSLEELGPYQNVFMQEMDVMNNLLAEMMRSLKELQLGFAGELTMSDQMDALK 4307          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A835YNN0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.510e-7
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   76 TLMEAFQSE--EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEAL 273
            +++E F  +  +VE+     +E GPYQNV +QE+  + TLLA   R L ELQ+G  G+LTM+D ME L
Sbjct: 4203 SVLERFAEKRFDVEDIARGLEEAGPYQNVFMQEMDVMNTLLAEVVRSLKELQQGFAGELTMSDAMERL 4270          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A5D6Y7I6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7I6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-6
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  103 EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            E ++   S +E+GPYQNV LQE   +  LLA   R L ELQ G  G+LTM+D MEA+Q
Sbjct: 3790 ECDDVARSLEEMGPYQNVFLQECETMNGLLAEIARSLTELQLGFAGELTMSDAMEAVQ 3847          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A6G0XX07_9STRA (Dynein_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX07_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.850e-6
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  103 EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            EV++   S +E+GPYQNV LQE   +  LL    R L ELQ G  G+LTM+D ME++Q
Sbjct:   12 EVDDIARSLEEIGPYQNVFLQECDAINVLLQEISRSLNELQLGFLGELTMSDAMESVQ 69          
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Match: A0A067CKL6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKL6_SAPPC)

HSP 1 Score: 54.3 bits (129), Expect = 2.610e-6
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  103 EVEEPGLSPDEVGPYQNVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQ 276
            EV++   S +E+GPYQNV +QE   +  LL    R L ELQ G  G+LTM+D MEA+Q
Sbjct: 4249 EVDDIARSLEEIGPYQNVFIQECDAINVLLQEIARSLNELQLGFLGELTMSDAMEAVQ 4306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2B5T1_9STRA6.490e-1143.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FYT3_ECTSI1.790e-847.30Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
B8C065_THAPS2.440e-847.83Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1UFN1_9STRA3.250e-839.53Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2CVE7_9STRA1.110e-736.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RYG8_9ARCH2.160e-741.67Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A835YNN0_9STRA7.510e-745.59Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A5D6Y7I6_9STRA1.020e-651.72Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XX07_9STRA1.850e-650.00Dynein_C domain-containing protein n=1 Tax=Aphanom... [more]
A0A067CKL6_SAPPC2.610e-650.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:4461331..4462044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYT3
Preferred nameODA-DHCB
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size305
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons3
Evalue2.93e-09
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size303
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.5822437-CDS-H-akashiwo_Contig9:4461330..44614681681388031.5822437-CDS-H-akashiwo_Contig9:4461330..4461468Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 4461331..4461468 -
1681388031.5937219-CDS-H-akashiwo_Contig9:4461614..44617041681388031.5937219-CDS-H-akashiwo_Contig9:4461614..4461704Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 4461615..4461704 -
1681388031.6042502-CDS-H-akashiwo_Contig9:4461969..44620441681388031.6042502-CDS-H-akashiwo_Contig9:4461969..4462044Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 4461970..4462044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.63.1prot_H-akashiwo_Contig9.63.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 4461331..4462044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.63.1

>prot_H-akashiwo_Contig9.63.1 ID=prot_H-akashiwo_Contig9.63.1|Name=mRNA_H-akashiwo_Contig9.63.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
DTDLFQRGNEDAGENSTVRVEGIIMTLMEAFQSEEVEEPGLSPDEVGPYQ
NVLLQELGRLQTLLAAAERELVELQKGLEGKLTMTDPMEALQVVTNQCVD
*
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mRNA from alignment at H-akashiwo_Contig9:4461331..4462044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.63.1 ID=mRNA_H-akashiwo_Contig9.63.1|Name=mRNA_H-akashiwo_Contig9.63.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=714bp|location=Sequence derived from alignment at H-akashiwo_Contig9:4461331..4462044- (Heterosigma akashiwo CCMP452)
GACACTGACTTATTCCAAAGAGGAAATGAAGATGCTGGAGAGAATTCGAC TGTGAGGGTTGAAGGTATCATAATGGTAAGATGGGCCGACCTCACTTACA CTTGGATGTTTGTTTCTCGTTGCTGTTTGCTTTTTTTCTAGCGCCGTTTG TGTTTGACATCTTTATGTATAGTGTCGTATATTTTGACCACCATGTCTAC TTGGGTCAATATTTTCTTATACCAAAAATGATGTTAATGTTTGACATCTA GTGCTTTAGGATATTGTGACCACCGTGTCCATTTGTAGCGAAAGTCTTCT TTCCAGGTGGTTGGTATGTTGCTGCTTGTATGTTATCCAGACACTTATGG AGGCGTTTCAGAGCGAAGAAGTTGAAGAACCTGGTCTCAGCCCAGATGAA GTGGGACCCTACCAAAATGTCCTGCTCCAGGTGAGGGGTCGCTTTCATTT TTCCATTCATATTTTCCATTGGTGGTGTGACCATCCAGACTTTGTTCCAG ATTCCTTGCAGGATCATGTATGTTGCTTCACACTGGTCATCATCTGGCTG AAGCCTGCCACCGCCAATTTTTCCAGGAGTTGGGGCGGCTACAAACCCTG CTGGCTGCAGCAGAGCGAGAGCTTGTGGAGCTGCAAAAGGGCTTGGAAGG CAAACTGACAATGACGGATCCCATGGAGGCGCTTCAGGTGGTCACCAATC AATGCGTCGACTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:4461331..4462044-

>mRNA_H-akashiwo_Contig9.63.1 ID=mRNA_H-akashiwo_Contig9.63.1|Name=mRNA_H-akashiwo_Contig9.63.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig9:4461331..4462044- (Heterosigma akashiwo CCMP452)
GACACTGACTTATTCCAAAGAGGAAATGAAGATGCTGGAGAGAATTCGAC
TGTGAGGGTTGAAGGTATCATAATGACACTTATGGAGGCGTTTCAGAGCG
AAGAAGTTGAAGAACCTGGTCTCAGCCCAGATGAAGTGGGACCCTACCAA
AATGTCCTGCTCCAGGAGTTGGGGCGGCTACAAACCCTGCTGGCTGCAGC
AGAGCGAGAGCTTGTGGAGCTGCAAAAGGGCTTGGAAGGCAAACTGACAA
TGACGGATCCCATGGAGGCGCTTCAGGTGGTCACCAATCAATGCGTCGAC
TAA
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