mRNA_H-akashiwo_Contig9.52.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.52.1
Unique NamemRNA_H-akashiwo_Contig9.52.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A7S4D679_HETAK (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D679_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-13
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKARRTA 148
            +EGNP      LHEDGGVVNRYGFNSQGIAKVEARLKARRTA
Sbjct:  199 QEGNPKPRMFRLHEDGGVVNRYGFNSQGIAKVEARLKARRTA 240
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A1U7TKI7_CARSF (dihydroorotate dehydrogenase (Quinone), mitochondrial n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A1U7TKI7_CARSF)

HSP 1 Score: 49.3 bits (116), Expect = 9.780e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNSQG++ VE RL+AR
Sbjct:  125 QEGNPRPRVFRLTEDQAVINRYGFNSQGLSVVEHRLRAR 163
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: UPI00063F9FCD (dihydroorotate dehydrogenase (quinone), mitochondrial isoform X2 n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063F9FCD)

HSP 1 Score: 49.7 bits (117), Expect = 1.320e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNSQG++ VE RL+AR
Sbjct:   84 QEGNPRPRVFRLPEDQAVINRYGFNSQGLSAVEHRLRAR 122
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A8C5UY84_MICMU (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Lemuriformes TaxID=376915 RepID=A0A8C5UY84_MICMU)

HSP 1 Score: 49.7 bits (117), Expect = 1.340e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNSQG++ VE RL+AR
Sbjct:  125 QEGNPRPRVFRLPEDQAVINRYGFNSQGLSAVEHRLRAR 163
[Close]
BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A6P5IBM8_PHACI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Diprotodontia TaxID=38609 RepID=A0A6P5IBM8_PHACI)

HSP 1 Score: 49.3 bits (116), Expect = 1.800e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNSQG++ VE RL+AR
Sbjct:   54 QEGNPKPRVFRLPEDQAVINRYGFNSQGLSVVEHRLRAR 92
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A7S1JAW3_9EUGL (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAW3_9EUGL)

HSP 1 Score: 48.9 bits (115), Expect = 2.500e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:   29 GNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKARRTA 148
            GNP      L ED GV+NRYGFNS+G+A V  RL AR+ A
Sbjct:  159 GNPVPRMFRLVEDRGVINRYGFNSEGLAAVRERLHARQAA 198
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A0S7KLH8_9TELE (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KLH8_9TELE)

HSP 1 Score: 48.5 bits (114), Expect = 3.060e-5
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNS G+A+V  RLKAR
Sbjct:  124 QEGNPKPRVFRLAEDQAVINRYGFNSCGLAEVHTRLKAR 162
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BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A482UB29_9ARCH (Dihydroorotate dehydrogenase (quinone) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UB29_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 3.140e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKA 136
            +EGNP      L ED GV+NRYGFNS+G+  V +RL A
Sbjct:   86 QEGNPRPRMFRLTEDAGVINRYGFNSEGVRSVASRLAA 123
[Close]
BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A6J3ATZ8_VICPA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A6J3ATZ8_VICPA)

HSP 1 Score: 48.5 bits (114), Expect = 3.400e-5
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKAR 139
            +EGNP      L ED  V+NRYGFNS G+A VE RL+AR
Sbjct:  125 QEGNPRPRVFRLPEDQAVINRYGFNSHGLAVVEHRLRAR 163
[Close]
BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Match: A0A7Y2BTG4_9HYPH (Dihydroorotate dehydrogenase (quinone) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BTG4_9HYPH)

HSP 1 Score: 48.5 bits (114), Expect = 3.400e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:   23 REGNPAAAHVPLHEDGGVVNRYGFNSQGIAKVEARLKARR 142
            ++GNP      L EDG V+NR GFN+QG A  +ARL+ARR
Sbjct:   91 QDGNPRPRLFRLQEDGAVINRMGFNNQGHAAAQARLRARR 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S4D679_HETAK1.010e-1383.33Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A1U7TKI7_CARSF9.780e-658.97dihydroorotate dehydrogenase (Quinone), mitochondr... [more]
UPI00063F9FCD1.320e-558.97dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A8C5UY84_MICMU1.340e-558.97Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A6P5IBM8_PHACI1.800e-558.97Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7S1JAW3_9EUGL2.500e-557.50Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A0S7KLH8_9TELE3.060e-558.97Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A482UB29_9ARCH3.140e-555.26Dihydroorotate dehydrogenase (quinone) (Fragment) ... [more]
A0A6J3ATZ8_VICPA3.400e-558.97Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7Y2BTG4_9HYPH3.400e-555.00Dihydroorotate dehydrogenase (quinone) n=1 Tax=Hyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:3386759..3388394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.4205985-CDS-H-akashiwo_Contig9:3386758..33867931681388029.4205985-CDS-H-akashiwo_Contig9:3386758..3386793Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3386759..3386793 -
1681388029.4319322-CDS-H-akashiwo_Contig9:3388279..33883941681388029.4319322-CDS-H-akashiwo_Contig9:3388279..3388394Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3388280..3388394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.52.1prot_H-akashiwo_Contig9.52.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 3386759..3388394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.52.1

>prot_H-akashiwo_Contig9.52.1 ID=prot_H-akashiwo_Contig9.52.1|Name=mRNA_H-akashiwo_Contig9.52.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
GSVTPLPQGGQPGRRACSAARGRRGRQPVRVQQPGHRQGRGASQGPADGG
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mRNA from alignment at H-akashiwo_Contig9:3386759..3388394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.52.1 ID=mRNA_H-akashiwo_Contig9.52.1|Name=mRNA_H-akashiwo_Contig9.52.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1636bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3386759..3388394- (Heterosigma akashiwo CCMP452)
GGGTCCGTGACCCCGCTGCCGCAGGGAGGGCAACCCGGCCGCCGCGCATG
TTCCGCTGCACGAGGACGGCGGGGTCGTCAACCGGTACGGGTTCAACAGC
CAGGGCATCGCCAAGGTGGAGGGCGGGCCGAGACCTGAACTGAAGCGCTG
AAGCGGTGCCTAGTAGCATAATATGAATAAGAAAGGAGATGCCCACATCG
TAAACAGTGGCTGCGCGAGCCATTTTTCGGGTGAGTCAAGACTATTTTCA
TTATACCGCCGAGTTTTTTTCATCGTGTCGGGTGAATCAAGACCTATTAA
ATTAATACTGAGTTTTTTTCATTGTGACCGAGAGGTTGTCTTAGTCTCTC
ATCCGAAAAAGTCTCCCGAATAATACCTTTTATAGTTTTTCAATTTTTAC
TTGGGGGGTCAGCACTTGTTGTTCTATTTCCTATATTGTAGTTATAAAAT
GGAGCACAGAAACATGTTTGTTTATTGCAGGGACGCAAAGTCACAAAAAA
GCGGTGGGACAAATCCACTTTTTGGAATTTGAAACTTCACTTCCTTTTCT
TCTAAAATGACTCGCCTACGATGTTCTTGTAGAACCAATCAAAATCAAAC
GATTTAAGTTGGTTCTGAATCATATACAAACCACCAATCAAAATCAAACG
ATTATAAAAATTGGTTCGGAATTATACACAAACCACACGAGGAGGGCAGA
AGGACAACAACATCAAGTACAAGGCTGGTATGTACAACTGCCATGAGTTG
TCTTTGGAGAGATCAGATGTGTAAAGCGCATAGTAGTCAAAACATTTTAC
TACCTTCATTCAAAATCTCCAAATCTCTTCAAAAAAAGATTGCAAAACTC
TTCAAAATCTCCAACATACATGCAACAAAGCCATTGGTTCTCTCTCCTAT
GCAAAGCCATTGATACAGTACACCGCTGCAATCAGGAGAAGCAGGCAAGC
AAGGTATAAGAATCATCATTCCTCTCCATCACTTAAAACGGCCACACAAT
TGTAGAAGCATGTACGACAAATAATGAGGTGTTGGATGACTTTCGGTGTT
TTCATTTGATTTCTCGAAGTCGATTGGCAGTTTTGTTTGAACTTTTACGC
TTGAAATAGTTCGAAAATTTATTGGCTAGAATTTTTGCAACCCGCATTTT
TTCATTGAATAATAATAATAATTAAAAAAGAAGAAAACAAGTTATCATGA
AAATAAAAAAAAAACATCCCTTTTAGCTATACCCAATTTAGCTTTTGAAT
TCGACTGTAAGCGGGTTAATATATATTCCTCTATTATAGTTTGCCTGCTT
TCATTATTTAAATGGGTTTTGAACTGCTGCTGGTTTGCAGTAACAACAAC
CAGGGATAATGCTTTGCAGTTTTTTTGTGTATTCCTCAAATGCAATATAT
ATACCCTTTTAGCTTTTTTGAATTCGACTGCTGTCGGCGGGTCAATATAT
TCCTCTATTCTTTGCCTGCTTTTATTTTCCGTTTTCGAATGGGTTTCTAA
CTGCTGCTGCTGGTTTGCAGTGGCAACAACCAGGAATAATGCCTCTTGCA
ATTTTTCATATATATTCCTCGTCAAATACAAACGTTGGGGGGGGGGGGCA
GGTCGAGGCGCGTCTCAAGGCCCGGCGGACGGCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:3386759..3388394-

>mRNA_H-akashiwo_Contig9.52.1 ID=mRNA_H-akashiwo_Contig9.52.1|Name=mRNA_H-akashiwo_Contig9.52.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3386759..3388394- (Heterosigma akashiwo CCMP452)
GGGTCCGTGACCCCGCTGCCGCAGGGAGGGCAACCCGGCCGCCGCGCATG
TTCCGCTGCACGAGGACGGCGGGGTCGTCAACCGGTACGGGTTCAACAGC
CAGGGCATCGCCAAGGTCGAGGCGCGTCTCAAGGCCCGGCGGACGGCGGC
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