mRNA_H-akashiwo_Contig9.49.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.49.1
Unique NamemRNA_H-akashiwo_Contig9.49.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig9.49.1 vs. uniprot
Match: A0A7S2UWT3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWT3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.080e-24
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:   20 MFCRIALFALLVACASAFMPASPMASKLSA--RSSELKMVIGLPYKPVFSYEWGVEISDKQKKATDDAKSKLKKDL-------PAQ-------RVHIGYKNAKKNTVAIEVVSEKFEGMSESARTSFVMGALGDASFTVDELYTITYKEKF 424
            M+ RIA  A+LVA A+AFM  +P  +K +A  +SS+L M I  P  PVF YE+ +++S+   KAT+ A   L K L       PA+       RVHI YK+  K TVAI+V S+ FEG SE+ARTS V+ A+G   FTV+E+YT T+ EKF
Sbjct:    2 MYSRIAFVAMLVASAAAFM--TPQFTKNAAVRKSSQLNMAIASPKIPVFLYEFELDVSEADAKATESAVEILTKQLSGTYTSPPAREGMPHVPRVHIAYKDLAKKTVAIDVCSDSFEGKSENARTSMVLDAIGKLPFTVEEIYTTTFAEKF 150
[Close]
BLAST of mRNA_H-akashiwo_Contig9.49.1 vs. uniprot
Match: A0A7S3Y278_HETAK (Glutaminyl-tRNA synthase (glutamine-hydrolyzing) (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y278_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 1.990e-19
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = 2 
Query:  131 VIGLPYKPVFSYEWGVEISDKQKKATDDAKSKLKKDLPAQRVHIGYKNAKKNTVAIEVVSEKFEGMSESARTSFVMGALGDASFTVD--ELYTITYKEKFVMGIQKAIPGTQVFDASVQS 484
            VIG+P KPVF+YEWGVEI +++K A   AK  LK  LPA+RV IGY +  +N+VAIEVVSE F G                        ELY  T +EKFV G+Q+A+P  QVF    QS
Sbjct:  540 VIGVPEKPVFTYEWGVEIPEEKKAAASAAKETLKSALPAERVQIGYIDVAENSVAIEVVSETFAGKXXXXXXXXXXXXXXXXXXXXXXAELYATTAREKFVAGVQRALPNAQVFGPDAQS 659
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2UWT3_9STRA1.080e-2447.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y278_HETAK1.990e-1947.50Glutaminyl-tRNA synthase (glutamine-hydrolyzing) (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:3304137..3305530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size910
Hectar predicted targeting categorychloroplast
Exons3
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.2804081-UTR-H-akashiwo_Contig9:3304136..33041551681388029.2804081-UTR-H-akashiwo_Contig9:3304136..3304155Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 3304137..3304155 +
1681388029.3226855-UTR-H-akashiwo_Contig9:3305212..33055301681388029.3226855-UTR-H-akashiwo_Contig9:3305212..3305530Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 3305213..3305530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.2916193-CDS-H-akashiwo_Contig9:3304155..33042391681388029.2916193-CDS-H-akashiwo_Contig9:3304155..3304239Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3304156..3304239 +
1681388029.301802-CDS-H-akashiwo_Contig9:3304372..33045701681388029.301802-CDS-H-akashiwo_Contig9:3304372..3304570Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3304373..3304570 +
1681388029.3125207-CDS-H-akashiwo_Contig9:3304921..33052121681388029.3125207-CDS-H-akashiwo_Contig9:3304921..3305212Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3304922..3305212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.49.1prot_H-akashiwo_Contig9.49.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 3304156..3305212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.49.1

>prot_H-akashiwo_Contig9.49.1 ID=prot_H-akashiwo_Contig9.49.1|Name=mRNA_H-akashiwo_Contig9.49.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=191bp
MFCRIALFALLVACASAFMPASPMASKLSARSSELKMVIGLPYKPVFSYE
WGVEISDKQKKATDDAKSKLKKDLPAQRVHIGYKNAKKNTVAIEVVSEKF
EGMSESARTSFVMGALGDASFTVDELYTITYKEKFVMGIQKAIPGTQVFD
ASVQSKGFGEAELEKKIAEMTKEAAASCSPEVQESMKSMA*
back to top

mRNA from alignment at H-akashiwo_Contig9:3304137..3305530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.49.1 ID=mRNA_H-akashiwo_Contig9.49.1|Name=mRNA_H-akashiwo_Contig9.49.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3304137..3305530+ (Heterosigma akashiwo CCMP452)
TCAGGTTGACCATAGAAAGATGTTCTGCAGAATTGCTCTCTTCGCCCTCC
TGGTGGCATGCGCCTCCGCTTTCATGCCTGCTAGCCCTATGGCCAGCAAG
CTGGTAAGTGAAAGTTTGGGGAAGGAGGGGCATACAGGCTCATGATCCTG
CAGGTTCATGATAATAAATGCAACTGAACCTGTTGATCAACTGCTGGGGC
TAATCGTTTATTTTTTCCCTATAATATGTCCTGCAGTCTGCCCGCAGCTC
TGAGCTGAAGATGGTCATTGGCCTTCCTTACAAGCCCGTGTTCTCTTACG
AGTGGGGCGTGGAGATCTCTGACAAGCAGAAGAAAGCCACCGATGATGCC
AAGAGCAAGTTGAAGAAGGACCTTCCTGCCCAGCGCGTTCACATCGGCTA
CAAGAATGCCAAGAAGAACACCGTCGCTATCGAGGTGAGTTGGGATACCT
GGAAGTTGAGTAGATTCTAGAAAAAAACAAAGTACAAGAAATTCTTGAAG
TATTCAAATTAGGTTTGATGGTGATCAACTGATAATTATCATCACACTTT
AGAAGTTTTGACCTAGTGCCAAATTCTGCACACGATTCCTCAATTCAATA
CTACTGACTTAGTAGAAAGGAAAAGCTTTGTCATTTTTTTTTTTTTGGGT
CAAGGTCTGATGAGGGGCAAGAACTAGAAACATGAAGAAAGCATGTGAAG
GCACGAGAGGGAACATAAAAATTAGAATTGAAACCCAGCTCATTTCGACA
ATGTCAATAATTTGATTTCACCTCTCCTTGCCCAGGTTGTCTCTGAGAAG
TTCGAGGGCATGTCCGAGTCTGCGCGGACTTCTTTTGTGATGGGCGCCCT
CGGCGACGCCTCGTTCACCGTGGACGAGCTGTACACCATCACCTACAAGG
AGAAATTCGTTATGGGCATTCAGAAGGCCATCCCCGGCACCCAGGTGTTC
GATGCCTCCGTCCAGTCCAAGGGCTTTGGTGAGGCTGAGCTCGAGAAGAA
GATCGCCGAGATGACAAAGGAGGCCGCTGCTTCTTGCAGCCCTGAGGTGC
AGGAGTCCATGAAGTCTATGGCCTAAGTTTTTCAGAAAGGAAAACAAAAT
AGATCTTCAAAAATGAAAGGGGGAGGAAGACCAGCAGAACCATGGTCATG
GATGCCCATGGCGAGTCCTGCACTGTGTGATAGATGGCGCCTGAAGAATG
GCTGCAGTGCGTTTGCAGCATGATAGATACTGTTCCCTTGACAGGAGGGA
TGGTGGAGGAGGACATAATTTTGCCGGAGTAAAGAAGGTAAATTCACCCT
GTTGCCTAGCAGAGTCACAGATCGGCTGCGATTCTCTCTGTACCATGCAT
GATAAAAACACCAATAATAAAAAATAATTGAAAATTATCAATGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig9:3304137..3305530+

>mRNA_H-akashiwo_Contig9.49.1 ID=mRNA_H-akashiwo_Contig9.49.1|Name=mRNA_H-akashiwo_Contig9.49.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=573bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3304137..3305530+ (Heterosigma akashiwo CCMP452)
ATGTTCTGCAGAATTGCTCTCTTCGCCCTCCTGGTGGCATGCGCCTCCGC
TTTCATGCCTGCTAGCCCTATGGCCAGCAAGCTGTCTGCCCGCAGCTCTG
AGCTGAAGATGGTCATTGGCCTTCCTTACAAGCCCGTGTTCTCTTACGAG
TGGGGCGTGGAGATCTCTGACAAGCAGAAGAAAGCCACCGATGATGCCAA
GAGCAAGTTGAAGAAGGACCTTCCTGCCCAGCGCGTTCACATCGGCTACA
AGAATGCCAAGAAGAACACCGTCGCTATCGAGGTTGTCTCTGAGAAGTTC
GAGGGCATGTCCGAGTCTGCGCGGACTTCTTTTGTGATGGGCGCCCTCGG
CGACGCCTCGTTCACCGTGGACGAGCTGTACACCATCACCTACAAGGAGA
AATTCGTTATGGGCATTCAGAAGGCCATCCCCGGCACCCAGGTGTTCGAT
GCCTCCGTCCAGTCCAAGGGCTTTGGTGAGGCTGAGCTCGAGAAGAAGAT
CGCCGAGATGACAAAGGAGGCCGCTGCTTCTTGCAGCCCTGAGGTGCAGG
AGTCCATGAAGTCTATGGCCTAA
back to top