mRNA_H-akashiwo_Contig9.33.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.33.1
Unique NamemRNA_H-akashiwo_Contig9.33.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.33.1 vs. uniprot
Match: A0A7S3Y3F0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3F0_HETAK)

HSP 1 Score: 184 bits (466), Expect = 1.350e-57
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 DGQCLDSASSSPRGNQADASPFTHRPSQMNRLSISTSPMVSPDKELLAHSSMNNSYNVDPSLSVIRKDRSSPKDSGSGSLSPGTLSPRRLGSKSFSPQ 294
            DGQCLDSASSSPRGNQADASPFTHRPSQMNRLSISTSPMVSPDKELLAHSSMNNSYNVDPSLSVIRKDRSSPKDSGSGSLSPGTLSPRRLGSKSFSPQ
Sbjct:   15 DGQCLDSASSSPRGNQADASPFTHRPSQMNRLSISTSPMVSPDKELLAHSSMNNSYNVDPSLSVIRKDRSSPKDSGSGSLSPGTLSPRRLGSKSFSPQ 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y3F0_HETAK1.350e-57100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:2521609..2524000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size295
Hectar predicted targeting categoryother localisation
Exons4
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.214401-CDS-H-akashiwo_Contig9:2521608..25216861681388029.214401-CDS-H-akashiwo_Contig9:2521608..2521686Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2521609..2521686 +
1681388029.2248423-CDS-H-akashiwo_Contig9:2521847..25219441681388029.2248423-CDS-H-akashiwo_Contig9:2521847..2521944Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2521848..2521944 +
1681388029.234286-CDS-H-akashiwo_Contig9:2522852..25229211681388029.234286-CDS-H-akashiwo_Contig9:2522852..2522921Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2522853..2522921 +
1681388029.243639-CDS-H-akashiwo_Contig9:2523949..25239991681388029.243639-CDS-H-akashiwo_Contig9:2523949..2523999Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2523950..2523999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.33.1prot_H-akashiwo_Contig9.33.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 2521609..2523999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.33.1

>prot_H-akashiwo_Contig9.33.1 ID=prot_H-akashiwo_Contig9.33.1|Name=mRNA_H-akashiwo_Contig9.33.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
DGQCLDSASSSPRGNQADASPFTHRPSQMNRLSISTSPMVSPDKELLAHS
SMNNSYNVDPSLSVIRKDRSSPKDSGSGSLSPGTLSPRRLGSKSFSPQ
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mRNA from alignment at H-akashiwo_Contig9:2521609..2524000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.33.1 ID=mRNA_H-akashiwo_Contig9.33.1|Name=mRNA_H-akashiwo_Contig9.33.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2392bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2521609..2524000+ (Heterosigma akashiwo CCMP452)
GATGGCCAATGTTTGGATTCAGCAAGCAGCTCCCCTCGTGGCAATCAGGC
AGATGCTTCACCTTTCACTCATCGACCAGTACGTATCCTTAATCATACAT
ATATGTCAGGCAAAGAAATGTTTCACTTTTCTAAATGCTCTCCTCTCCAG
CAGCCCTGTACATATATCCAGCTTCCATACTACTTTTGGAATCACTTCAT
TGGTTGTTCTTGTTCCCATCCCCCCCCCCCAAACAAAAGTCACAGATGAA
CCGGCTATCAATTTCAACAAGCCCCATGGTCAGCCCTGACAAAGAACTTC
TTGCACACTCATCCATGAACAACTCCTACAATGTCGGTATGTTTTGTTTA
GAGAGGTTTTTGTCTTTCTACATCGACTGCATGGATCTTCCTTCTTTTTA
TCTGGTAGTATGTATATTTATATCACCAATATATCATATATTTAGGGCGG
ATCTATACTTCAAGAAGTGTTTTGCTGAGCTTGCCTATCCGGTAGATGAG
ATTGAGAGCTTGTGGGAAGATTGAAAACTTCAGTTGGGGCTCTGAGGTGC
ATGTTTTGGTGGGGCTGGGGGCATTTGGATGAGGGGCCAAACTAGTGGAC
TGAGTCGGGGTTTTAAAACTGCTGCAGATGAAATGGTGTTGGAAATTGAT
TGAGAAGTGGCGAACATTAATGGATAGTGCGCGTCTGGTTGTACGTGCAG
GGGGGGGTCACGGCTCTGTTAGTGAAAGGAGATGGCCTAGTATGCAGATG
TCCCTGTGGTAATATACCAAAACCTACACATGAAATCCCAAAACCCAAAT
CAAAACAAAACATCAAGTACAACACACCCCACTATCTCTGGAAGAGAGTG
GCAATCCCCTCGCCATCCTCGAACCCCGAGCTCCTCCACCATATATATAT
ATATAAAATATGTGTGTGTGTGTGTGTGTGCTGTATTCCTGTTTGAACAG
TATGTTATATAATGCTTAGGGTTTTGGGATTTCATGTTTAGGTTTTAGTA
TATTACCGCAGGGATATCTACATAGATGCAAGACGTAGGTTGTTTTGGTT
AAATTTAACTCTCTCTCTCTCTCTCTATATATGAATGTACACATACATAA
ATTCGCTGATTTGATGTTGCATGCATGCATTTGTTTATGTTCGCATGGCA
GACTATTGATGATTGTGTGTTTGTGTGCAATGATGATGTATATTATTGTA
TCAATATATTTAATACAAACTCACTGTACTTTCTCAACCACCAGACCCCA
GCCTATCCGTGATAAGGAAGGACCGAAGTTCTCCAAAAGACTCTGGAAGT
GGTTCGCTTTCCCGTGAGTATGCATTATTTTGAATAGTAGTACATTGTGT
TTTACAGAATGTACGTAAAAGGGGGCACTTACGATGGCTCTCTTGCTAGA
TAGACATTGTATGTATGCTCGTGGTTCAAGAAAATATAGGAGTATAATCA
CGGCGGCGGTATATACTCTTGGTTCATGAAAACCACCACCTCTTTTGGAA
CATACGGCTTCCGTAACTATTATTAAAAGAGGTGTCTGTTGAGATTGTGG
CAGTCACAATACAACGGATGTTTTTTGTCTGTGTGGATACGCAACCAGAA
GACAACACAGTCCTGCCTGAAAATCTGGATGGGTTGTTGTAAGCAGATAT
AGACGGAAGGCAAAAGAGCCGTGATTTTGGGTGATTGTAATGCCCATCAT
GAGCAAGTCATGGATGGGTTCAGCGTCTGCGAAGCTTCGTGTTCTCAAAA
AACTTGGTGTGTGGGCCTGCTCAAGGCTAAAACATCCTGGATCTGGTCCT
GGTGCCATCCAATGTTGAAGGGGGGGTTGAGGTGTTTCCAAACATGGATA
CATCTGGGGCACGATACGTCATGTGGAACAGGATATATGTCATGTGGAAC
ATGATATTGCGATGTTTTTCAATAACTTGATTATTTATTTATTTTTTGTG
GCGCTTTTCTCCTGCATATGAGGCCACTAACCAGGTCATATGGTCTGTTC
TTGCTTCCTTCATAAAGGCGTGAAACAGCACCCAAATTGTTTTTTTGAAG
GTTGTGACAAAAGTCCATGAATTTTGGCCCTGAAATTTTGTGGTGGTCTT
TTGATGCAGAAGAAGGATCATTGTTTGGCCCATTATGGGCTCTATGGGCT
TCGTTTTGATATATATTAAATTTAAATGCAGCAAAGTCTGGTTGAAAAAT
GATATGTCAAAAATTAGATTGACCATGACCAAGAGAAAGATAAACATACA
TATCTGGTATCAGTGTTAAAACGCCTGGCTGGAGTATTATTTGGTTTCCC
CCCAACCACTTTTGCCACTTTGCCCTCTCCCCTACACCCAGCTGGCACTC
TTTCGCCGCGCAGACTTGGGAGCAAGAGCTTCTCGCCACAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:2521609..2524000+

>mRNA_H-akashiwo_Contig9.33.1 ID=mRNA_H-akashiwo_Contig9.33.1|Name=mRNA_H-akashiwo_Contig9.33.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2521609..2524000+ (Heterosigma akashiwo CCMP452)
GATGGCCAATGTTTGGATTCAGCAAGCAGCTCCCCTCGTGGCAATCAGGC
AGATGCTTCACCTTTCACTCATCGACCATCACAGATGAACCGGCTATCAA
TTTCAACAAGCCCCATGGTCAGCCCTGACAAAGAACTTCTTGCACACTCA
TCCATGAACAACTCCTACAATGTCGACCCCAGCCTATCCGTGATAAGGAA
GGACCGAAGTTCTCCAAAAGACTCTGGAAGTGGTTCGCTTTCCCCTGGCA
CTCTTTCGCCGCGCAGACTTGGGAGCAAGAGCTTCTCGCCACAG
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