mRNA_H-akashiwo_Contig899.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig899.2.1
Unique NamemRNA_H-akashiwo_Contig899.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig899.2.1 vs. uniprot
Match: A0A7S4D628_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D628_HETAK)

HSP 1 Score: 178 bits (452), Expect = 4.100e-55
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   13 SSSLWLGGALYISHIHHXXXXXXXXXXXXXLRVAMAMAKPAFQWILLLISSVHGFHLLNNPHVTSQWRNQCPKPVFYFQHHCSDAMNKDRNRLHRNI 303
            SSSLWLGGALYISHIHHXXXXXXXXXXXXXLRVAMAMAKPAFQWILLLISSVHGFHLLNNPHVTSQWRNQCPKPVFYFQHHCSDAMNKDRNRLHRNI
Sbjct:    1 SSSLWLGGALYISHIHHXXXXXXXXXXXXXLRVAMAMAKPAFQWILLLISSVHGFHLLNNPHVTSQWRNQCPKPVFYFQHHCSDAMNKDRNRLHRNI 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig899.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D628_HETAK4.100e-55100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig899contigH-akashiwo_Contig899:215494..215972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size307
Hectar predicted targeting categorysignal peptide
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388028.8397596-CDS-H-akashiwo_Contig899:215493..2157161681388028.8397596-CDS-H-akashiwo_Contig899:215493..215716Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig899 215494..215716 +
1681388028.8505824-CDS-H-akashiwo_Contig899:215890..2159701681388028.8505824-CDS-H-akashiwo_Contig899:215890..215970Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig899 215891..215970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig899.2.1prot_H-akashiwo_Contig899.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig899 215494..215970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig899.2.1

>prot_H-akashiwo_Contig899.2.1 ID=prot_H-akashiwo_Contig899.2.1|Name=mRNA_H-akashiwo_Contig899.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
AHVSSSSLWLGGALYISHIHHHHVSSFIFLFCFWLRVAMAMAKPAFQWIL
LLISSVHGFHLLNNPHVTSQWRNQCPKPVFYFQHHCSDAMNKDRNRLHRN
I
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mRNA from alignment at H-akashiwo_Contig899:215494..215972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig899.2.1 ID=mRNA_H-akashiwo_Contig899.2.1|Name=mRNA_H-akashiwo_Contig899.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=479bp|location=Sequence derived from alignment at H-akashiwo_Contig899:215494..215972+ (Heterosigma akashiwo CCMP452)
GCGcaCGTTTcCAGTTCAAGCCTTTGGCTTGGGGGTGCGCTATATATAAG
TCACATTCACCACCACCACGTTTCATCGTTCATATTCTTATTCTGCTTCT
GGCTCAGGGTGGCCATGGCCATGGCAAAACCAGCATTCCAGTGGATCCTC
CTACTTATCTCTAGTGTACACGGCTTCCATCTTCTGAACAACCCCCACGT
CACATCACAATGGAGGAATCAATGTGAGCTCTGTTCATATTGCGTCTTGC
ATAATATATGTAAAAATACTACAAAAAAAATGTCAGCAACAGCATAATTA
CTACAGTAGCAGTTGCTCGTCAGAGATTCTGGTCAATCTGGTCTAGTGGT
CCTGTTATGGAGTTCGATGCCTTCCAATACAAAACAAATATCACTAGGCC
CAAAACCAGTATTTTACTTTCAACACCACTGCAGTGATGCGATGAACAAG
GATCGCAATCGTCTTCATAGAAATATAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig899:215494..215972+

>mRNA_H-akashiwo_Contig899.2.1 ID=mRNA_H-akashiwo_Contig899.2.1|Name=mRNA_H-akashiwo_Contig899.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig899:215494..215972+ (Heterosigma akashiwo CCMP452)
GCGcaCGTTTcCAGTTCAAGCCTTTGGCTTGGGGGTGCGCTATATATAAG
TCACATTCACCACCACCACGTTTCATCGTTCATATTCTTATTCTGCTTCT
GGCTCAGGGTGGCCATGGCCATGGCAAAACCAGCATTCCAGTGGATCCTC
CTACTTATCTCTAGTGTACACGGCTTCCATCTTCTGAACAACCCCCACGT
CACATCACAATGGAGGAATCAATGCCCAAAACCAGTATTTTACTTTCAAC
ACCACTGCAGTGATGCGATGAACAAGGATCGCAATCGTCTTCATAGAAAT
ATA
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