mRNA_H-akashiwo_Contig865.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig865.11.1
Unique NamemRNA_H-akashiwo_Contig865.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig865.11.1 vs. uniprot
Match: A0A7S2XZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ14_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.350e-18
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 GVPLELPLNTLFVFLVVANSYVMARRLRPDKRAQLTTKFVIPLLTPIFLGAFFSHYILPIYEGYGDGGRQVIIVCSIVVLAISRGLCGMVMQSIAQLQAS 300
            G PLELPLN LF+ L+V NS  MA RL   +R  L  KF IP++ P+ +   FSHY+LPIY    +  RQ I++  ++VLAI RG+CGM MQ++ QLQA+
Sbjct:  149 GPPLELPLNFLFLSLIVYNSRRMAARLCYSQRKALAIKFGIPIVIPVIIAVIFSHYVLPIYTKSEEWIRQGIVLAVMIVLAIMRGVCGMCMQTLVQLQAN 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig865.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2XZ14_9STRA2.350e-1851.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig865contigH-akashiwo_Contig865:466824..468283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1460
Hectar predicted targeting categorysignal anchor
Exons1
Cds size876
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388017.525008-UTR-H-akashiwo_Contig865:466823..4668891681388017.525008-UTR-H-akashiwo_Contig865:466823..466889Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig865 466824..466889 +
1681388017.5479293-UTR-H-akashiwo_Contig865:467765..4682831681388017.5479293-UTR-H-akashiwo_Contig865:467765..468283Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig865 467766..468283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388017.535999-CDS-H-akashiwo_Contig865:466889..4677651681388017.535999-CDS-H-akashiwo_Contig865:466889..467765Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 466890..467765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig865.11.1prot_H-akashiwo_Contig865.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig865 466890..467765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig865.11.1

>prot_H-akashiwo_Contig865.11.1 ID=prot_H-akashiwo_Contig865.11.1|Name=mRNA_H-akashiwo_Contig865.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=292bp
MARRLRPDKRAQLTTKFVIPLLTPIFLGAFFSHYILPIYEGYGDGGRQVI
IVCSIVVLAISRGLCGMVMQSIAQLQASKTFIIMSTIVALNSVLIRTLQA
GLGTLRGKVTNALILGVIEMSGTLFVPYGDFILYMLKNRTVKIPKGLAIP
RRRRVFADVVLMSNKLECSSVALANGIMFLVKTSYGHEADVGGALATFVV
STLLLLVVESLYEYLTYLWLARMENIPVLRCGKAQSRLNVRLLLFIMTMG
SLYFSSKVVPIVAASAGIDDTDVCLFCMDADVCYGDTLALL*
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mRNA from alignment at H-akashiwo_Contig865:466824..468283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig865.11.1 ID=mRNA_H-akashiwo_Contig865.11.1|Name=mRNA_H-akashiwo_Contig865.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1460bp|location=Sequence derived from alignment at H-akashiwo_Contig865:466824..468283+ (Heterosigma akashiwo CCMP452)
GGTGTGCCCCTTGAGCTCCCGCTGAACACCCTCTTCGTGTTCCTGGTGGT
GGCGAACAGCTACGTTATGGCCCGCCGGTTGCGGCCTGACAAGCGTGCCC
AGCTGACCACAAAGTTTGTAATACCGCTGCTGACCCCAATCTTCCTGGGC
GCTTTCTTTAGTCACTACATCCTGCCCATCTACGAGGGGTACGGCGACGG
CGGCCGACAGGTAATCATCGTCTGCTCGATTGTGGTGTTGGCCATCAGCC
GCGGTCTCTGCGGGATGGTGATGCAGTCCATCGCCCAGCTGCAGGCCTCC
AAGACCTTCATCATCATGAGCACGATCGTTGCGCTGAACAGCGTCCTAAT
CCGCACCTTACAGGCAGGGCTGGGAACGCTCCGCGGGAAGGTGACCAATG
CGCTCATCCTGGGCGTGATCGAGATGAGCGGCACGCTTTTTGTGCCCTAT
GGGGACTTCATCCTGTACATGCTGAAGAACCGCACGGTCAAGATCCCCAA
AGGGCTGGCCATCCCCCGGCGCCGGCGCGTGTTCGCCGACGTGGTGCTCA
TGTCCAACAAGCTGGAGTGCTCGAGCGTGGCCCTGGCCAACGGGATCATG
TTTCTGGTCAAGACCTCATACGGGCACGAGGCCGACGTGGGCGGCGCGCT
GGCGACTTTTGTGGTCTCCACGCTGCTGCTGCTGGTGGTGGAGAGCCTGT
ACGAGTACCTCACTTACCTGTGGCTGGCCCGCATGGAGAACATCCCCGTG
CTGCGCTGCGGCAAGGCGCAGAGCCGGCTGAACGTGCGGCTGCTGCTGTT
CATCATGACCATGGGGTCGCTTTACTTCAGCTCGAAGGTGGTGCCCATCG
TGGCGGCCAGCGCGGGCATCGACGACACGGACGTGTGCCTGTTCTGCATG
GACGCAGACGTCTGCTACGGGGACACGCTGGCGCTGCTGTGATTCAGCGC
GGGCCGCGGGCCCGGGGATCGCCCGGCCCAGGGGGGGAGGAAGAAGAAGA
AGAGTGAGAACAAAGAGAAGAGGCGGAAAGAGAGAGTGGAGGCTTGGGAC
TTCAAGTAAAAGTTGAACTTGAGCTCCTAGTTTGACAGTGCCTCTGTGCA
CAGTGAGTGCATGTTGAGATTGGGAGGTGGCAGTTGGGGCATATCTCCGT
GGCCTTGATGGGCCATGGATGGTGGGTGCCCATGTCGCCCCACTTTGGGG
GGTGAGCAAGTACACAGTGCTTCCACTCCTGGCCCTACAGAATTGCCCTG
CCACCTTGTCACCGGGATCTGTAGGCCGGGGCCAATGGTCGCAGCGGGTC
GGGCTGTCCCGTCGTTGTTCAGAATATAGTAGTATTATGATGGCCGCTGC
AGACTGCCCCCTCCCCCCCTTCCCCTCCCATAATACTGCAGCACGCTCAG
ATTACAAGTACGTACAGTGAAAGAAGGGACAGTAGGTATTCCTCATACTT
CACTGGGCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig865:466824..468283+

>mRNA_H-akashiwo_Contig865.11.1 ID=mRNA_H-akashiwo_Contig865.11.1|Name=mRNA_H-akashiwo_Contig865.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=876bp|location=Sequence derived from alignment at H-akashiwo_Contig865:466824..468283+ (Heterosigma akashiwo CCMP452)
ATGGCCCGCCGGTTGCGGCCTGACAAGCGTGCCCAGCTGACCACAAAGTT
TGTAATACCGCTGCTGACCCCAATCTTCCTGGGCGCTTTCTTTAGTCACT
ACATCCTGCCCATCTACGAGGGGTACGGCGACGGCGGCCGACAGGTAATC
ATCGTCTGCTCGATTGTGGTGTTGGCCATCAGCCGCGGTCTCTGCGGGAT
GGTGATGCAGTCCATCGCCCAGCTGCAGGCCTCCAAGACCTTCATCATCA
TGAGCACGATCGTTGCGCTGAACAGCGTCCTAATCCGCACCTTACAGGCA
GGGCTGGGAACGCTCCGCGGGAAGGTGACCAATGCGCTCATCCTGGGCGT
GATCGAGATGAGCGGCACGCTTTTTGTGCCCTATGGGGACTTCATCCTGT
ACATGCTGAAGAACCGCACGGTCAAGATCCCCAAAGGGCTGGCCATCCCC
CGGCGCCGGCGCGTGTTCGCCGACGTGGTGCTCATGTCCAACAAGCTGGA
GTGCTCGAGCGTGGCCCTGGCCAACGGGATCATGTTTCTGGTCAAGACCT
CATACGGGCACGAGGCCGACGTGGGCGGCGCGCTGGCGACTTTTGTGGTC
TCCACGCTGCTGCTGCTGGTGGTGGAGAGCCTGTACGAGTACCTCACTTA
CCTGTGGCTGGCCCGCATGGAGAACATCCCCGTGCTGCGCTGCGGCAAGG
CGCAGAGCCGGCTGAACGTGCGGCTGCTGCTGTTCATCATGACCATGGGG
TCGCTTTACTTCAGCTCGAAGGTGGTGCCCATCGTGGCGGCCAGCGCGGG
CATCGACGACACGGACGTGTGCCTGTTCTGCATGGACGCAGACGTCTGCT
ACGGGGACACGCTGGCGCTGCTGTGA
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